Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate UP-S coat protein gene, partial cds.

ACC No: AY238881

Dated: 2004-12-04 | Length: 855 | CRC: 2035071452

                !!NA_SEQUENCE 1.0
ID   AY238881   standard; genomic RNA; VRL; 855 BP.
XX
AC   AY238881;
XX
SV   AY238881.1
XX
DT   19-MAR-2003 (Rel. 75, Created)
DT   04-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE   Papaya ringspot virus isolate UP-S coat protein gene, partial cds.
XX
KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-855
RX   PUBMED; 15338325.
RA   Jain R.K., Sharma J., Sivakumar A.S., Sharma P.K., Byadgi A.S., Verma A.K.,
RA   Varma A.;
RT   "Variability in the coat protein gene of Papaya ringspot virus isolates
RT   from multiple locations in India";
RL   Arch. Virol. 149(12):2435-2442(2004).
XX
RN   [2]
RP   1-855
RA   Jain R.K.;
RT   ;
RL   Submitted (18-FEB-2003) to the EMBL/GenBank/DDBJ databases.
RL   Plant Pathology, Indian Agricultural Research Institute, Pusa Campus, New
RL   Delhi, Delhi 110012, India
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .855
FT                   /country="India:Pune"
FT                   /db_xref="taxon:12205"
FT                   /mol_type="genomic RNA"
FT                   /note="type: P"
FT                   /organism="Papaya ringspot virus"
FT                   /isolate="UP-S"
FT   CDS             <1. .>855
FT                   /codon_start=1
FT                   /db_xref="GOA:Q80JR5"
FT                   /db_xref="UniProt/TrEMBL:Q80JR5"
FT                   /note="nucleocapsid"
FT                   /product="coat protein"
FT                   /protein_id="AAO59523.1"
FT                   /translation="SKNEAVEAGLNEKLKEKEKQKEKEKEKGKEKDDASDGNDVSTSTK
FT                   TGERDRDVNAGTSGTFTVPRIKSFTDKMILPRIKGKTVLNLNHLLQYNPQQIDISNTRA
FT                   TQSQFEKWYEGVRNDYGLNDTEMQVMLNGLMVWCIENGTSPDMSGVWVMMDGETQVDYP
FT                   VKPLIEHATPSFRQIMAHFSNAAEAYIAKRNATERYMPRYGIKRNLTDISLARYAFDFY
FT                   EVNSKTPDRAREAHMQMKAAALRNTNRRMFGMDGSVSNKEENTERHTVEDVNRDMHSLL
FT                   GMRN"
XX
SQ   Sequence 855 BP; 299 A; 146 C; 208 G; 202 T; 0 other;

AY238881  Length: 855  December 14, 2004 15:03  Type: N  Check: 7280  ..

       1  tccaaaaatg aagccgtgga agctggcttg aatgaaaagc tcaaagaaaa
      51  agaaaaacag aaagaaaaag aaaaagaaaa aggaaaagaa aaagatgatg
     101  ctagtgacgg aaatgatgtg tcgactagca caaaaactgg agagagagat
     151  agagatgtca atgctgggac cagtggaacc tttactgttc cgagaataaa
     201  gtcatttact gacaagatga ttttaccgag aattaaggga aagactgtcc
     251  ttaatttaaa tcatctcctt cagtataatc cgcaacaaat tgacatttct
     301  aatactcgtg ccactcaatc acaatttgag aagtggtacg agggagtgag
     351  gaatgattat ggccttaatg atactgaaat gcaagtgatg ttaaatggct
     401  taatggtttg gtgtattgag aatggtacat ctccagacat gtctggtgtc
     451  tgggttatga tggatgggga aactcaagtt gattatccag tcaagccttt
     501  aattgagcac gctactccgt catttaggca aattatggct cacttcagta
     551  acgcggcaga agcatacatt gcaaagagaa atgctactga gagatacatg
     601  ccgcggtatg gaatcaagag aaatttgact gacattagcc tcgctagata
     651  cgctttcgat ttctatgagg tgaattcgaa aacacctgat agggctcgcg
     701  aagctcacat gcagatgaaa gctgcggcat tgcgaaacac taatcgcaga
     751  atgtttggta tggacggcag tgtcagtaac aaggaagaga acacggagag
     801  acacacagta gaagatgtca atagagacat gcactctctc ctgggtatgc
     851  gcaac