Sequence of DPV Marine birnavirus
Marine birnavirus strain AY-98 segment A, complete sequence.
ACC No: AY283785
Dated: 2004-10-29 | Length: 3092 | CRC: 1730502504
ID AY283785; SV 1; linear; genomic RNA; STD; VRL; 3092 BP.
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AC AY283785;
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DT 21-MAY-2003 (Rel. 75, Created)
DT 29-OCT-2004 (Rel. 81, Last updated, Version 2)
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DE Marine birnavirus strain AY-98 segment A, complete sequence.
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KW .
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OS Marine birnavirus
OC Viruses; dsRNA viruses; Birnaviridae; Aquabirnavirus;
OC unclassified Aquabirnavirus.
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RN [1]
RP 1-3092
RX DOI; 10.1111/j.1365-2761.2004.00585.x.
RX PUBMED; 15509258.
RA Zhang C.X., Suzuki S.;
RT "Aquabirnaviruses isolated from marine organisms form a distinct genogroup
RT from other aquabirnaviruses";
RL J. Fish Dis. 27(11):633-643(2004).
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RN [2]
RP 1-3092
RA Zhang C.X., Suzuki S.;
RT "Comparative analysis of marine birnavirus strains and their phylogenetic
RT relationships to other aquabirnaviruses based on the sequences of genome
RT segment A";
RL Unpublished.
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RN [3]
RP 1-3092
RA Zhang C.X., Suzuki S.;
RT ;
RL Submitted (27-APR-2003) to the EMBL/GenBank/DDBJ databases.
RL Centre for Marine Environmental Studies, Ehime University, Matsuyama, Ehime
RL 790-8577, Japan
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FH Key Location/Qualifiers
FH
FT source 1. .3092
FT /organism="Marine birnavirus"
FT /segment="A"
FT /specific_host="ayu (Plecoglossus altivelis)"
FT /strain="AY-98"
FT /mol_type="genomic RNA"
FT /country="Japan:Kochi"
FT /db_xref="taxon:79600"
FT gene 112. .513
FT /gene="vp5"
FT CDS 112. .513
FT /codon_start=1
FT /gene="vp5"
FT /product="VP5"
FT /note="anti-apoptosis protein"
FT /db_xref="InterPro:IPR004284"
FT /db_xref="UniProtKB/TrEMBL:Q7T402"
FT /protein_id="AAP37168.1"
FT /translation="MNHEHNKGNRNLLEIHYASREWSSKHSGRHNRETHTKTRDLVIQL
FT RGLRLRKWASCLLPWSSWIQSRCPLQVESEPDGTGIRPVAGNITGPEEGIQLREADLTE
FT IRRPELNPTRWSVCPEWDPERRDLRRKSV"
FT CDS 119. .3037
FT /codon_start=1
FT /product="polyprotein"
FT /note="VP2, NS, VP3 precursor"
FT /db_xref="GOA:Q7TLB5"
FT /db_xref="InterPro:IPR002662"
FT /db_xref="InterPro:IPR002663"
FT /db_xref="InterPro:IPR002664"
FT /db_xref="UniProtKB/TrEMBL:Q7TLB5"
FT /protein_id="AAP37169.1"
FT /translation="MNTTKATATYLRSIMLPENGPASIPDDITERHILKQETSSYNLEV
FT SDSGSGLLVCFPGAPGSRVGAHYKWNQNQTELEFDQWLETSQDLKKAFNYGRLISRKYD
FT VQSSTLPAGLYALNGTLNAATFEGSLSEVESFSYNSLMSLTTNPQDKVNNQLVTKGVTV
FT LNLPTGFDKPYVRLEDETPQGPQSMNGARMRCTAAIAPRRYEIDLPSARLPTVPATGTL
FT TTIYEGNADIVNSTTVTGDISFRLEQDPPNDTKYDFQLDFLGLDNNVPVVSITSSTLAT
FT TDNYRGVSVKFTQSIPTETITKPITRVKLSYKINQQTTIGNAATLGPLGPSSVSFSSGN
FT GNVPGVLRPITLVAYEKMTPQSILTVAGVSNYELIPNPELLKNMVTKYGKYDPEGLNYA
FT KMILSHREELDIRTVWRTEEYKERTRAFNEITDFSSDLPTSKAWGWRDIVRGIRKVAAP
FT VLSTLFPMAAPLIGAADQFIGDLTKTNAAGGRYLTHAAGGRYTDVMDSWASGTDTGRFS
FT RNLKDRLESNNYEEMELPPPTKGVIIPVVHTVESAPGEAFGSLLVIIPGAHPELLDPNQ
FT QVLSHFKNDTGCVWGIGEDIPFEGDDICYTALPLKEIKKNGNIVVEKVFAGPAMGPSCQ
FT LGLSLLVNDIDKGVPRMVFTGEIANDEETIVPICGVDIKAIAAHEHGLPLVGCQPGVDE
FT VVANTSLASHLIQSGALPVQKAQGASRRIKYLGELMRTTASGMDEELQKLLHATMARAK
FT EVKDAEVFKLLKLMSWTRKNGLTDHMYEWSKEDPEAVKFGKLISTPPKHQEKPKGPDQH
FT TAQEAKAVRISLDAVKAGADFASPDWIAENGYRGPSPGQFKYYVITGRVPDPRDEYEDY
FT VRKPITRPTDMDKIRRLANSVYGLPHQEPAPEEFYQAVVEIFAENGGRGPDQDQMQDLR
FT DLARQMKRRPRPAETRRQNRAPPRAAPSGSSRFTPSGDNGEV"
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SQ Sequence 3092 BP; 905 A; 919 C; 770 G; 498 T; 0 other;
ay283785 Length: 3092 29-OCT-2004 Type: N Check: 3969 ..
1 ggaaagagag tttcaacgtt agtggtaacc cacgagcgga gagctcttac
51 ggaggagctc tccgtcgatg gcgaaagccc tttctaacaa acaacctaca
101 attccatcta catgaatcat gaacacaaca aaggcaaccg caacttactt
151 gagatccatt atgcttcccg agaatggtcc agcaagcatt ccggacgaca
201 taacagagag acacatacta aaacaagaga cctcgtcata caacttagag
251 gtctcagact ccggaagtgg gcttcttgtc tgcttccctg gagctcctgg
301 atccagagtc ggtgcccact acaagtggaa tcagaaccag acggaactgg
351 aattcgacca gtggctggaa acatcacagg acctgaagaa ggcattcaac
401 tacgggaggc tgatctcacg gaaatacgac gtccagagct caaccctacc
451 cgctggtctg tatgccctga atgggaccct gaacgccgcg accttcgaag
501 gaagtctgtc tgaagtggag agcttctcct acaacagtct gatgtccctc
551 accacgaacc cccaggacaa agtgaacaac cagctagtca ccaaaggagt
601 gacagtccta aacctaccaa cagggttcga caagccatac gtccgcctgg
651 aggacgagac cccacaaggg ccccagtcaa tgaacggcgc ccggatgagg
701 tgcacagctg caattgcacc acgaaggtac gaaatcgacc tcccatccgc
751 acgcctcccc acagtaccag cgactgggac cctcacaaca atctatgaag
801 ggaacgccga cattgtgaac tcaaccacag tgaccggcga catcagcttc
851 agactggaac aagacccccc gaatgacacg aagtacgact tccagctcga
901 cttcctcggc ttagacaaca acgtccccgt cgtgtcaata accagctcta
951 cgctggccac aaccgacaac tacagggggg tctcagtcaa attcacacag
1001 tcaatcccaa cagagacaat cacaaaaccc atcaccaggg tcaagctgtc
1051 ctacaaaatc aaccagcaga caactatcgg caatgcagca acgcttggac
1101 ccctggggcc ctcatccgtc tcattctcat caggaaacgg caacgtacct
1151 ggagtgctca ggccaatcac cctggtggcc tacgagaaga tgacccccca
1201 gtcgatcctg acggtagctg gagtgtcaaa ctacgagctg atcccaaacc
1251 ccgaactcct gaagaacatg gtcacgaaat atggcaagta tgaccctgaa
1301 ggtctcaact acgccaagat gatcctgtcc caccgagagg agctagacat
1351 cagaacagtc tggagaaccg aggagtacaa ggagagaaca agagccttca
1401 atgagatcac agacttctca agtgacctcc caacctcaaa agcctggggg
1451 tggagagaca ttgtgagagg catccggaag gtggcagcac cagtgctgtc
1501 aacactcttc cccatggcgg caccactcat cggagccgcc gaccaattca
1551 tcggggacct gaccaagacc aacgcagccg gaggccgcta cctaacacat
1601 gcagcaggag gacgctacac tgacgtaatg gactcctggg ccagcggcac
1651 agacactggg aggttctcac gcaacctcaa agaccggctg gagtcaaaca
1701 actatgagga gatggaactt cctccaccaa cgaaaggagt catcatacct
1751 gtagtgcaca cagtggagag tgcacctggt gaggcctttg ggtcccttct
1801 ggtaatcatc ccaggagcac acccagaact tcttgaccca aaccagcagg
1851 tcctgtccca cttcaaaaac gacaccggat gtgtctgggg cataggagaa
1901 gacattccat tcgaaggtga cgacatatgc tacaccgccc tgcctctcaa
1951 agagatcaag aagaacggaa acatcgtggt ggagaaagtc ttcgctggcc
2001 ctgcgatggg accatcctgc cagctgggcc tgtcgctcct tgtcaacgac
2051 atcgacaagg gcgtacccag aatggtgttc actggagaga tcgcaaacga
2101 cgaggaaacc atcgtcccca tctgcggtgt agacatcaaa gccatcgccg
2151 cccatgaaca tgggctgcca ctcgttggct gtcaaccagg agtcgatgag
2201 gtggtggcaa acacatctct cgcctcacac ctgatccaga gcggagcact
2251 accagtgcag aaagcacaag gcgccagcag gaggatcaag tacctggggg
2301 aactaatgag aacaactgca tcagggatgg atgaagagct gcagaagctg
2351 ctgcacgcca ccatggccag agcaaaagag gtgaaagacg ccgaagtctt
2401 caaacttctc aagctgatgt cctggaccag gaagaacggg ctcaccgacc
2451 acatgtatga atggtcaaaa gaggaccccg aagcagtcaa atttggcaaa
2501 ctcatcagca caccaccaaa acaccaggag aagccaaaag gacccgacca
2551 gcacacggca caggaggcaa aagccgtccg gatctcactg gatgcagtga
2601 aagcaggagc agactttgcc tccccagact ggatcgcgga gaatggatac
2651 cgcggtccat caccaggcca gttcaagtac tacgtcatca cagggcgcgt
2701 cccagaccca cgagacgagt acgaggacta cgtgcgaaaa ccaataacaa
2751 gacccacgga catggacaaa atcagacgcc tagccaacag tgtctacgga
2801 cttccccacc aagaacctgc accagaggaa ttctaccaag cggtagtcga
2851 gatcttcgca gaaaatggag gacgaggacc agatcaagac cagatgcaag
2901 acctgaggga cttggcccgg cagatgaaac gacgaccccg accagctgag
2951 acacgcaggc aaaaccgagc tccaccacgg gcggcaccca gtggaagctc
3001 acgttttacc ccctccggag ataacggaga agtgtaacgg ctactctctt
3051 tcctgactga tccctggcct caacccccgg ccccccaggg gg