Sequence of DPV Raspberry ringspot virus
Raspberry ringspot virus segment RNA2 complete sequence.
ACC No: AY303788
Dated: 2003-11-11 | Length: 3914 | CRC: 75816699
!!NA_SEQUENCE 1.0
ID AY303788 standard; genomic RNA; VRL; 3914 BP.
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AC AY303788;
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SV AY303788.1
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DT 11-NOV-2003 (Rel. 77, Created)
DT 11-NOV-2003 (Rel. 77, Last updated, Version 1)
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DE Raspberry ringspot virus segment RNA2 complete sequence.
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KW .
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OS Raspberry ringspot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Comoviridae;
OC Nepovirus; Subgroup A.
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RN [1]
RP 1-3914
RX MEDLINE; 22965724.
RX PUBMED; 14602206.
RA Ebel R., Schnabel A., Reustle G.M., Krczal G., Wetzel T.;
RT "Complete nucleotide sequence of an isolate of the nepovirus raspberry
RT ringspot virus from grapevine";
RL Virus Res. 97(2):141-144(2003).
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RN [2]
RP 1-3914
RA Ebel R., Schnabel A., Reustle G.M., Krczal G., Wetzel T.;
RT ;
RL Submitted (20-MAY-2003) to the EMBL/GenBank/DDBJ databases.
RL Staatliche Lehr- und Forschungsanstalt, Centrum Gruene Gentechnik,
RL Breitenweg 71, Neustadt an der Weinstrasse D-67435, Germany
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FH Key Location/Qualifiers
FH
FT source 1. .3914
FT /db_xref="taxon:12809"
FT /mol_type="genomic RNA"
FT /organism="Raspberry ringspot virus"
FT /strain="cherry"
FT /specific_host="grapevine"
FT /segment="RNA2"
FT CDS 204. .3524
FT /codon_start=1
FT /product="polyprotein 2"
FT /protein_id="AAQ73823.1"
FT /translation="MSQFWGEFPEAVINTFQRLQIALIGDIKKCPLSSPLFPELSKLDA
FT HSQHHLLASFELPRFGGVTPGVMEQLHDAESELAEARARLLRERLHAVANKENIPYLGD
FT CMYYDAPGINQEELLQAAFLEAPTPEWESGRIRPLWPKDDWFRDAKQGPYPEDYGDIPL
FT GDFDNLYRAFDALVEEHWMSVYSTTLNPFALLRCGSEFVEECVVSAGSLIPACMMTDHH
FT LQPTGDRQADKEERQDYADSQDSIQSMGDFWKEFYSKDSGKKIPDSHKSRLANDPNKVG
FT FTKSALFHKQPLAHSLAQTWANFRGTQDKADLVKVTMDMNIEKYTVRLPDAVRTTAGPL
FT YIEWINLPRMSENSARKLAEAGWNNADICGVDLAVKSHIAVGTPVRVIISLVDGACSDM
FT PTATMCAFEVNLAAQNNRSLNLPLLSLPFSRLLADLHDFQHRVKIACQFRDPEGFNVGT
FT PMLSFSSLEFSELKQTAFERNSLLRDSWSEIEKRACHGGGRCVASQGIVQTWEKEVNPP
FT LKEYAPLVLPPVPQPKRNFIDQQSGEVVRPLIQKSRSMRFKSPSDLWSRPSVDGGSTFT
FT LSPSRGSLRCDNVPGCAYEVDPLHLLYYELVNVPKDTLGGTLLTRIDVRAKAATFDSAV
FT WRQWVRDGCLKPKIKMRITAATSCFSGIVLGACLDAYRRIPATTKTDFTASLVTGLPNI
FT VWATRDTSEIEWDIDLAAVCGHTFFALEDTFGYMDFLVYVLRGNEVTAVADWSIYVSFH
FT VDWTQESMSATLIPTFVWPPEPADISYFKEVWGPYHFTLDGTEAKESFSLMPGMAIPRG
FT AQTVRTFPRVLAAHFRSWTGKVRMSIQEVSSIFLTGTYMVGVSWNATADLTDITTRKHW
FT IVKSGEVFELDLYCPYGENPTFTGLVNGIPYIIVHRLGGIIGPKDSVGTFGFMIHLHGL
FT TGVYKNPTLHSGDRSVGSAWFRVTNILDDNLVFNIPGRIEDMVAVAGKYEVTNYANPTS
FT MLFSVTGLHGGFIRLHITWCPNTSLGESKGTLKYMQYLYHTTTENFFGDQATRGIIDQN
FT GFTVDLACGDFFGATRVGLKGEVERLGIYSSNAKSIAEIRVSFEILSMKFYGSTIRVK"
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SQ Sequence 3914 BP; 901 A; 868 C; 961 G; 1184 T; 0 other;
AY303788 Length: 3914 November 25, 2003 09:14 Type: N Check: 7090 ..
1 tttgtctcaa atctcaatct cattactgca gctctcatct ctctctgatt
51 ctcattctct gattctctct tgttgtggtt ttcaatatct cttgtggttt
101 ggtacaaagt caagttttcc ggaagtttcc ttttaattgt ttaataaact
151 tccactttta tttctcctct tcttattctg ttactgcgtt gtgccttggc
201 acaatgtccc agttttgggg agaattcccc gaggctgtta ttaacacctt
251 tcagcgcctt caaatagcgc tgattggtga cataaagaaa tgtcccctct
301 cctcccctct cttccccgag ctttctaagc tcgatgctca ctcccagcat
351 catttgctgg cctccttcga actccccagg ttcggaggag ttactcctgg
401 tgtcatggag caactccatg atgcggagtc tgaactggct gaagccaggg
451 ctagactcct tcgcgaacgg ctacacgcgg tagccaataa ggagaacatc
501 ccctatcttg gggattgtat gtattatgat gcgcctggca tcaaccaaga
551 ggagctgctt caggcagctt ttcttgaggc tcccacacct gagtgggaga
601 gtggtcgtat taggcctctc tggcctaaag atgattggtt tagggacgcc
651 aagcaaggcc cctacccaga ggattatggc gatattcctc tgggtgattt
701 cgataatctg tatcgcgcgt tcgatgctct tgtggaggag cattggatgt
751 ctgtctactc caccacactc aatcctttcg ctctactcag atgtggtagt
801 gaatttgtgg aggagtgcgt tgtctctgcg ggtagtctga ttcccgcttg
851 tatgatgact gaccatcacc ttcagccaac gggtgatagg caagccgaca
901 aggaagagcg gcaggattat gcggacagtc aagactccat tcagagtatg
951 ggtgatttct ggaaagaatt ctattcgaag gattctggaa agaaaattcc
1001 cgactctcac aagtcgagat tggccaatga tcccaataaa gttggcttca
1051 caaagagtgc gctgttccat aaacagcccc tggcgcattc actggcccaa
1101 acgtgggcaa attttagggg cacacaagat aaggcggact tggtcaaggt
1151 gaccatggac atgaatattg agaaatatac agtccgcctt cctgacgcag
1201 tgcgtacgac agcgggtccg ttatatattg aatggatcaa cttaccacgc
1251 atgtccgaga attccgcacg taaactagct gaggctgggt ggaataatgc
1301 ggatatttgt ggcgtggatc tcgctgtcaa gtcacatata gctgttggca
1351 caccagtacg tgttatcatc tctctcgtag atggtgcgtg ttctgatatg
1401 cccacggcaa ctatgtgtgc ctttgaggtg aatttggcag cacagaacaa
1451 tcgatcactg aatcttccgc tgctgagttt acctttttcg cggctgctag
1501 ctgacttaca tgatttccaa catcgtgtta agattgcttg ccagtttcgg
1551 gaccctgagg gctttaacgt gggaactcct atgttgagct tttcttcgct
1601 tgaattttct gagctgaagc agaccgcatt tgagcggaat tctttgctca
1651 gggattcttg gtccgaaatt gaaaagcgtg cttgtcacgg tggtggccgt
1701 tgtgttgcgt cccagggtat cgtgcagacc tgggagaagg aggttaatcc
1751 tcccttgaaa gaatatgcac ccttggtctt gcctcctgtt ccccagccca
1801 aaagaaattt tatcgatcag caatctgggg aggttgtgcg gccattgatt
1851 cagaagtccc gctccatgcg atttaaatcg ccgtctgatt tatggagtag
1901 gccctctgtg gatgggggat caacattcac actgtcgccg tcaagaggct
1951 ctttacggtg cgataatgtg cctggttgtg cctatgaggt agatccattg
2001 cacttgttgt attatgaatt ggtcaatgta ccaaaagaca ctcttggcgg
2051 cactttgctg actcggatag atgtccgggc taaggctgca acctttgata
2101 gtgctgtatg gcgacaatgg gtgagagatg gttgtctcaa acccaaaatc
2151 aaaatgcgca ttaccgcagc tacttcgtgt ttctctggta ttgtgttagg
2201 tgcgtgtctt gacgcatatc ggagaattcc tgcaaccacg aagactgatt
2251 tcactgcgtc ccttgtgacg ggcctaccta acattgtgtg ggcgacacgc
2301 gatacttcag agatagaatg ggatatcgat cttgcggcag tgtgcggaca
2351 tacttttttt gcactggaag atacctttgg gtatatggac tttctagttt
2401 atgtgctcag gggtaatgag gttactgccg ttgctgattg gtcgatatat
2451 gtttccttcc atgttgattg gacacaggaa agtatgtcgg ccacacttat
2501 cccaaccttt gtatggcccc cagaaccagc tgatatttct tatttcaaag
2551 aagtatgggg gccttaccat ttcacacttg atggtaccga ggcaaaagaa
2601 agcttcagtt taatgcccgg tatggccatc ccccgcggtg cgcaaactgt
2651 gcgtaccttc ccccgcgttt tagctgcaca tttccgatcg tggactggga
2701 aagtcaggat gtctatccag gaggtttcct ccattttcct gaccggaaca
2751 tacatggttg gtgtgtcttg gaacgccact gctgatctca ccgacattac
2801 tactcggaaa cattggattg ttaaatccgg tgaggttttc gagttggatc
2851 tttactgtcc ttatggtgag aatccaactt ttacaggcct ggttaatgga
2901 ataccatata tcattgtaca caggcttgga ggaatcattg gtcccaagga
2951 ttctgttgga acgtttggtt ttatgataca cctacatggt ttaactggtg
3001 tatataaaaa tcctacgttg cacagtggag accgttctgt ggggagtgcc
3051 tggttccgtg ttactaatat ccttgatgat aacttggtgt ttaacatacc
3101 gggtagaatt gaagatatgg ttgcggttgc tgggaaatat gaagtcacga
3151 attatgctaa tcctaccagt atgctctttt ccgttactgg tttgcatggt
3201 ggcttcatac gtcttcatat aacatggtgt ccaaacacaa gtctcggtga
3251 gtcaaagggt actctcaaat atatgcaata tttgtaccat acgaccactg
3301 agaatttctt tggtgatcaa gcaacccgtg gcatcattga ccaaaatggt
3351 ttcacggttg accttgcctg tggcgatttc tttggtgcca cgagagttgg
3401 tctgaaaggg gaagttgaga gacttggcat atacagttca aatgccaagt
3451 ctattgctga aattcgtgtt tcctttgaga tactgtctat gaaattttat
3501 ggcagtacca tcagagtgaa gtgaactggc acagccctgt ggctccgggt
3551 taattgagcc aactaaagct gtgccatgtg agtttgtgtt ttacacatgg
3601 cccctgtgag tcttgacaac ttgcaggttc agcggtactg ttaaatgtct
3651 ttcttctggt ggtgacgtcc cagaacagta tgacgagttt tccaatttat
3701 cagtaaattg gagccgattg cagagtcggt ggtgtaaaag tgtgctacgg
3751 cttgttccgt aggcataata agccaagatt atctgtttta atgctttgag
3801 tcgtagttag ttttctttct gttgctccct ctttgaggtt gtgcctttag
3851 caagcacaca aaaatatgca ttttattttg ttcttaagct tccgtagtgt
3901 cgttctgtcc gaac