Sequence of DPV Raspberry ringspot virus
Raspberry ringspot virus grapevine strain RNA 1 complete sequence.
ACC No: AY310444
Dated: 2006-03-12 | Length: 7935 | CRC: 1006585890
ID AY310444 standard; genomic RNA; VRL; 7935 BP.
XX
AC AY310444;
XX
SV AY310444.1
XX
DT 12-MAR-2006 (Rel. 87, Created)
DT 12-MAR-2006 (Rel. 87, Last updated, Version 1)
XX
DE Raspberry ringspot virus grapevine strain RNA 1 complete sequence.
XX
KW .
XX
OS Raspberry ringspot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Comoviridae;
OC Nepovirus; Subgroup A.
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RN [1]
RP 1-7935
RA Wetzel T., Ebel R., Moury B., Le Gall O., Endisch S., Reustle G.M.,
RA Krczal G.;
RT "Sequence analysis of grapevine isolates of Raspberry ringspot nepovirus";
RL Arch. Virol. 151(3):599-606(2006).
XX
RN [2]
RP 1-7935
RA Ebel R., Schnabel A., Reustle G.M., Krczal G., Wetzel T.;
RT ;
RL Submitted (27-MAY-2003) to the EMBL/GenBank/DDBJ databases.
RL Staatliche Lehr- und Forschungsanstalt, Centrum Gruene Gentechnik,
RL Breitenweg 71, Neustadt an der Weinstrasse D-67435, Germany
XX
FH Key Location/Qualifiers
FH
FT source 1. .7935
FT /organism="Raspberry ringspot virus"
FT /segment="RNA 1"
FT /strain="grapevine"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:12809"
FT CDS 146. .7246
FT /codon_start=1
FT /product="polyprotein 1"
FT /protein_id="AAQ77238.1"
FT /translation="MGWTCPSGACMYSRSTWSNRELKEDGLSFTKRCPGAMCGALLVRS
FT EPVHVPKATVVPQTPLPTVQPKRTVVASTPLRKQDCVVVVEVGSPALLSLEYPALAGRA
FT RSSGEFDSALLARRPSNGGVTRAPAGWYKPRAVRSQPTKRAVPAWVSEARHLLKGALNG
FT SNAFGPRYCRDRFPKARLVWALGMLAKRAPPSIAIGRQLKKSFLALKARIASALAKKQS
FT ARAARRQEACRKIRLALWQARGVAALERQQARQTSGAGLYSVHLCTKRASSPVVEVPKR
FT HKKKVVSSPSPVFVQEFPEDLVGPDFWETSGLLDCAAPLQRREIPIPNYGIDECQEQPG
FT RFVLGPKSPSVSLGDNKPRLPTCPLEAVNLLWASNLFEDWELDIIGQMVSDGLLTSQAF
FT LDGCTLVSYYGQEQMVDSFHCLLQDSVPVEVAEALAVDVQALDFDAVFGCGISDFLRGT
FT RDAIKGWIMDPVIAKSTTWCNTIIDTVRALFDQYFAPFHKIIDGMSYVNSLWAKCKEWA
FT QSVLKNGSQLFSVMWETHCVSFVIIITCACTLLVENVLKELRLISRVGTLTGCVVSGAL
FT GILGCGMILTKCEDLAVVSASIRAFLGVLLCPPTMEKVDLNQSLIPEDVQAVSWTGVDR
FT VLGALNAVGSGLTGFNSDTIIYWGRFAQSFDGMRRGKDAVCALAAYLFEKLGTVYNRVT
FT GKEAAFFHELSSLVSIDVQGWLNSSRRVMAESIAFTKSDAVAFATVERLINDGETIQLT
FT AASAPKSHSMQFGQILAERLRELRTLRNDMAHAGSFEGRRCVPFWLYIYGPPGVGKTTT
FT MHEFSQALLTAFEFPSDSLTSKSATDKYWSLYRRQALVQIDDLGAISESGMEQEMMNIV
FT SSATYNPTMAVANEKTTLFDSKFIVSTSNGYSAGTDAKIHDRKAFNRRRRVVIKTRGKA
FT GVAFNPHDSTAAAEFCVIERDDRTETPIWVQSGEAPEDKEMYWMDFRTTVAYVIEQARI
FT HHNAEDIEQAQYSMKHSRTRQLYQVCENYIGEVKMSVANFVPGDMLGAWNLEAKGRFLY
FT SCVDGRVYSYDSEQKAYDEGPVDKTLDFEQICLEKLSYTLQADIQGGPKSATAGIFLRS
FT MVSGECAVEGVDKLNKSASREHLVFFKNLSLADRVYLRLVQKRILQLAMVGDPLGVRSY
FT AVMMEGFQSSYNYVKENGGRLLLILCSCMLLGVACYAFFNALAILIGGTSVAAGAAAMV
FT DIGACGSTSTYASDYGAKMGRRNMPHRSREIPAVWSEEAGYDEKWQLCGLLETSRSDMP
FT SVHVNLVPGNKIAITKHQALAIPEGSSVGLSVAGRSFRTFLWRASAITEYAESEICTYF
FT DSRIPSLGKQAMKMYSDSDLDALNVKYFATRTLHFRLVEDRVEKRHWDADACVLSTPKG
FT IVSTVNGVKYRQEIPTSITYKRESVKHDCGALVFTEVRGKPKAVGMLVGTLGGITYVCK
FT LPPIEVDAFACVPDIRGFNLEAGVSTLGYSKLGWLDRRHQPHNSERTEFVPIPEKYHMD
FT DVPCKIPAVLSSKDPRLADVPHCEGYEPYKQGMEKFAHPMQEIDEQLLATVCDEIAQEF
FT HEVGVRGRMVSMDEAINGHRKYDIPSFYVEGASTRELNELRTSCGTEVWHCDPGSDIEF
FT EYPRIVPGPKESKWKCESTCVGCTVRGSGTEAIANFVKTRSPCCEEIFFDGLDLTTSEG
FT YPLFLDRPAGAKGKERFFEGSENQKFLIPECPLDVQLRKGIEETHLGTPQLIVKESAKD
FT ELLKEGKVLPSEGMPGTRLFSICPAWYNIVVRQHFVYVAESVRKRRRTLSSQVGIVVGS
FT REWDDLAARLRSKKNDKMYCCDYSKFDGLMTPQIVHAITGIYERMFSGKDGMSQFRQNL
FT LMGICNRISICGSQVYRVEAGMPSGFALTVDFNSIFNEILVRCAYRSLVPDIERPFFSN
FT NVVLIVYGDDNVLGIHPNIESVFNGNTIKAYMKEELGIKITDGADKLSPVIDARPLEQC
FT EFLKRTWRKDRQYGLYRAPLVETSIFSCLRYVRLQNYDWQAPLLQNVQGSLYEASLHGP
FT EMHDRIYKHFAMHFPKWVEEHELYTYEQCRTRFIAAKNGDFNFHPASAQMGHVFSQQTE
FT IQELSQPQNPMRCFKLHEKIHVCGPGHNESDCFYVDVRVKGKITKGKGFHCEPVYSAGS
FT GQLGTVKWASSFRSSLACPLRDSAVEAFKRGECIYFRDNGELINAWLAAINFGMSINAD
FT GLDGLLQVYRNQGPTHLDDLSFYFEGGVVGVPAPAHLMVYGTDIPMLNRLCPKTILESA
FT PPPGRSDNVSERGQVQTFLHMSPKPCFITIKGSRKVCFGLRCKETCRGHISCIDVVRNS
FT VTNHKAAMLDVLRKGCFNIQ"
XX
SQ Sequence 7935 BP; 1874 A; 1659 C; 2119 G; 2283 T; 0 other;
ay310444 Length: 7935 12-MAR-2006 Type: N Check: 2384 ..
1 tttgtcttta atctcagtct tattattgta gctctcctat ctctacttga
51 atcttactct tttgtgatat ttcttcaatc tttctgtgat tcgcgacaaa
101 gtaaagtttg tcagttttct tttaattgtt caaaaactgg taacaatggg
151 ttggacctgc ccctctgggg cttgtatgta ctcccgctcc acttggagca
201 atcgggagtt gaaggaagat ggcctgtcct tcactaagcg ctgtcctggt
251 gccatgtgtg gtgccttact tgtcaggtcg gaacccgttc acgttccaaa
301 ggctactgtg gtgcctcaaa ccccacttcc tactgtccaa cccaagagga
351 cagtggtagc ctcgacaccc ctgcgaaagc aggattgtgt cgttgtagta
401 gaggtagggt ccccagccct cctctcgctc gaataccctg ctcttgcagg
451 aagggctcgc tctagtggcg agtttgattc cgcgctgctc gcgcgaaggc
501 cctctaacgg aggcgttact agagcacccg ccggctggta taagccgagg
551 gctgtgcgct cacagcctac caagcgggca gttcccgctt gggtttctga
601 ggcccgccac cttctaaagg gggccttgaa tggatcaaat gcgtttggtc
651 cacgctactg ccgggataga ttcccgaagg cccgccttgt gtgggcactt
701 ggcatgctgg ctaagcgtgc ccctccttca attgccattg gaaggcaatt
751 gaagaagagt ttcctggcac taaaagccag gattgccagt gcactggcaa
801 agaaacaaag tgcacgtgct gcacgcaggc aagaagcctg cagaaaaatc
851 cgcctagctt tatggcaggc gaggggtgtt gctgcccttg aacggcaaca
901 agcgcgccag acctctgggg ctggtttgta ttccgtgcac ttgtgtacga
951 agagggcttc gagccctgtt gtggaagtgc ccaagaggca caagaaaaag
1001 gtggtttctt caccttctcc tgtattcgta caggagtttc ctgaggacct
1051 tgttggtcct gatttctggg agacatctgg tcttctagac tgtgctgctc
1101 ccctacagcg aagggagatt ccaattccaa attatgggat tgatgaatgc
1151 caggagcagc ctggtaggtt tgtcttggga cccaagagtc cctccgtgtc
1201 acttggcgac aacaagccaa gactgcccac atgccctctg gaggcagtga
1251 atttgctttg ggcttctaat ctttttgagg attgggaact cgatattatt
1301 gggcagatgg tatcggatgg tttgttgacc tcacaagcct tcctagatgg
1351 ttgtaccctg gtctcttatt atggccagga gcagatggtg gattcttttc
1401 actgtctttt gcaggattct gttcctgttg aggttgctga ggcgctggct
1451 gttgatgtgc aagcgctgga ttttgacgcc gtcttcggat gtggtatttc
1501 ggatttcctt cggggaacac gcgatgctat aaaagggtgg attatggatc
1551 cagtgattgc caagtcgaca acttggtgta acaccatcat tgatacggtg
1601 cgtgctttgt ttgatcagta ttttgcaccg ttccacaaaa tcattgatgg
1651 catgtcctat gttaattcac tgtgggccaa atgtaaagag tgggctcaat
1701 cagtgctaaa gaatggttcc caactgttct ctgtcatgtg ggaaacgcat
1751 tgtgtgagtt ttgttattat cattacttgc gcatgcaccc tgttggtaga
1801 aaatgtgttg aaggagttgc gactgatatc acgcgttggt actcttaccg
1851 gctgtgttgt atctggcgct cttgggatat taggttgtgg catgattctc
1901 actaagtgtg aggaccttgc tgtagtgtct gctagtatcc gagcctttct
1951 tggtgtgctg ttatgtcctc caactatgga gaaagtggat ttgaaccagt
2001 ccctgatccc tgaagatgtt caggccgtga gttggactgg tgttgatagg
2051 gtgcttggag cactaaatgc cgttggttca gggttgacag gcttcaactc
2101 agacaccata atatattggg gtagatttgc ccaatctttt gacggtatga
2151 gacgagggaa ggatgctgtg tgcgctctcg cagcatatct ttttgaaaag
2201 ctgggcacgg tttacaatcg tgtgacaggt aaggaggcgg cttttttcca
2251 tgagctatcc tcacttgttt ccattgatgt ccagggatgg ttgaattcct
2301 cacgtagagt gatggcggag tctatagctt ttactaagtc tgatgctgtt
2351 gcttttgcca ctgtcgagag gttgataaat gatggtgaga ccattcaact
2401 gaccgctgct tctgctccaa aatctcactc tatgcagttt ggtcagatac
2451 tcgctgagcg cttgagggaa ctccgtactt tgcggaatga tatggctcat
2501 gctggttctt tcgaagggcg taggtgtgta cctttttggt tatatatcta
2551 cggacctccg ggagtgggga aaaccaccac tatgcatgag ttttcacagg
2601 ctttgctgac agcctttgag ttcccttctg attccttaac atccaaaagt
2651 gccactgata aatactggtc gctctatcga cgccaagccc tggtgcaaat
2701 agacgatctt ggtgctattt cagaaagtgg tatggaacag gagatgatga
2751 atatcgtttc ctccgctaca tataatccta ctatggcggt tgctaatgag
2801 aagacgacgc ttttcgatag caagttcatt gtttctacgt cgaatggtta
2851 ctctgcgggc actgatgcta aaatacatga tcggaaggca tttaatcggc
2901 gccgcagagt ggttataaaa acccgtggaa aggcgggagt agcctttaat
2951 ccccatgata gcaccgcagc tgctgagttc tgcgtgattg agagggatga
3001 taggactgag acacccattt gggtgcagag tggtgaggcc ccggaagaca
3051 aggagatgta ttggatggac ttccgcacaa cagtggccta tgtcatagaa
3101 caggcgcgaa tccatcacaa tgctgaggac attgagcaag cccaatattc
3151 gatgaaacac agtcgtacaa ggcaattgta ccaagtgtgt gagaactaca
3201 ttggggaagt gaagatgtct gttgctaatt ttgtgcctgg ggatatgttg
3251 ggagcttgga atttggaagc taaaggcagg ttcttgtatt catgtgttga
3301 tggtcgggtt tattcttatg attccgagca gaaggcttat gatgaggggc
3351 cggtcgataa aactctagat tttgagcaga tttgtttgga gaagctctcc
3401 tacaccctac aagctgatat ccagggtggt cctaagtccg caactgctgg
3451 tatattcctg cggtcaatgg tctcgggaga gtgcgctgtc gagggagtgg
3501 ataagttaaa caagagtgct tctcgtgagc atcttgtttt ttttaaaaac
3551 ttgtctctgg ctgatagagt gtatctccgc ctcgtgcaga agcgaatttt
3601 gcagcttgcg atggttggtg atcctctggg agtgaggagt tatgcggtaa
3651 tgatggaagg attccaaagt tcttacaact atgttaagga gaatggaggg
3701 agacttttat tgatattgtg tagctgtatg ttgttgggtg ttgcctgcta
3751 tgcttttttc aatgctttag caatactcat cggagggact tcagtggctg
3801 ctggggcagc tgccatggtt gatattgggg cttgcggtag tacttctacc
3851 tatgcatcag attacggcgc caagatgggc cgtaggaaca tgccgcatcg
3901 ctccagagag attcctgcag tctggtctga agaggcggga tacgatgaga
3951 aatggcaact gtgcggtctt ctggagacca gcagaagtga tatgccctcc
4001 gtacatgtga atcttgtacc gggtaataaa attgccataa ctaaacatca
4051 ggccctggcc attccagaag gctcttctgt gggcttgagt gtggcaggaa
4101 gaagttttag aacattccta tggcgagctt ctgcgataac ggaatatgct
4151 gagagtgaaa tctgtaccta ctttgatagt cgaatccctt cattggggaa
4201 acaagctatg aagatgtatt cagattctga tcttgatgcg ttgaacgtta
4251 aatattttgc gacccggaca ctacatttta gactggtgga ggatcgggtc
4301 gaaaagcgcc attgggatgc ggatgcatgc gttctttcaa ccccgaaggg
4351 cattgtttct actgttaacg gggtgaagta tcggcaagag atacccacat
4401 ctatcacgta caagcgtgag agtgtgaagc acgactgcgg tgcactggtt
4451 tttacagaag tgcgcggcaa gccaaaagct gtgggtatgt tggtgggcac
4501 tctaggggga ataacatatg tgtgtaaatt gcctcccatt gaggttgatg
4551 cttttgcatg tgttcccgac atccgaggtt ttaatcttga agcgggagtt
4601 tcgactcttg gctattctaa actcgggtgg ctagataggc ggcatcagcc
4651 gcacaacagc gagagaactg agtttgtgcc cataccagaa aaataccaca
4701 tggacgatgt tccatgtaaa ataccggcag tgctcagttc taaggatcca
4751 cggttggcag acgtaccgca ttgtgagggt tacgaacctt acaaacaggg
4801 catggaaaag ttcgctcatc ctatgcaaga gatagatgag caattgttgg
4851 ccaccgtttg cgatgaaatc gcccaggaat tccatgaggt gggtgtacga
4901 gggaggatgg tctctatgga tgaggctatc aatggtcacc gcaagtatga
4951 tatcccctcg ttttacgttg aaggagccag taccagagaa cttaatgagt
5001 tgcggacctc ttgtggtact gaagtttggc actgtgatcc ggggagtgac
5051 atcgaatttg aatatccgcg cattgtccct ggtcccaaag aatccaaatg
5101 gaagtgtgag agtacatgcg ttggttgtac tgtcagaggc agtggtactg
5151 aggccattgc aaattttgtc aagacgcgtt ctccatgttg tgaagagatt
5201 ttctttgatg gtcttgattt aaccacttcc gagggctacc cccttttctt
5251 ggatcgtccg gcaggggcga aaggaaaaga aaggtttttc gagggtagcg
5301 aaaatcaaaa gttcctcata ccagagtgcc cgcttgatgt gcagctgcga
5351 aagggtattg aggagactca tcttggcaca ccacagctca tcgtcaagga
5401 gagtgccaag gatgagttac ttaaggaagg gaaggttcta ccttctgagg
5451 ggatgccggg aacacggttg ttctccatct gtccggcctg gtataatatc
5501 gttgtgcgtc aacactttgt atatgttgct gagagtgtgc gcaaacgaag
5551 acgtactttg tctagtcagg tgggaatcgt tgttggttct cgagagtggg
5601 atgatcttgc agcacgactt aggtccaaga agaatgataa gatgtactgc
5651 tgcgattatt ccaagtttga tgggctgatg actccccaga ttgttcatgc
5701 tatcactggc atttatgaaa gaatgttcag tggtaaagat gggatgagtc
5751 aattccggca gaacctattg atgggtattt gcaatcgtat ctccatctgt
5801 ggttcacaag tctatagagt tgaagctggt atgccctctg ggtttgcctt
5851 gactgttgat ttcaactcta tcttcaatga gatattggtt aggtgtgctt
5901 atcgttccct tgtgcctgac attgaaaggc ccttcttttc caacaatgtg
5951 gtcttaattg tgtatggcga tgataatgtt ttgggtattc acccaaacat
6001 tgagtctgtt tttaatggca acacaattaa ggcatacatg aaggaggagt
6051 tggggattaa aattactgat ggtgccgata agctcagccc tgtgatagat
6101 gctcgtcccc tcgagcaatg cgaatttctg aagcgtacct ggaggaaaga
6151 tcgacagtat ggcttatatc gggctccact tgtggagacc agtatatttt
6201 catgcttgcg ttatgtacgc cttcaaaatt atgactggca ggctcctctg
6251 ttgcagaatg tgcagggaag tctttatgag gccagtttac atggtccgga
6301 aatgcacgat cgtatttaca aacattttgc aatgcatttc ccaaaatggg
6351 tggaggagca tgaattgtac acttatgaac agtgtcgcac acgattcatt
6401 gctgctaaga atggagattt caatttccac ccggcctcag cgcagatggg
6451 ccacgtcttc tcccagcaga ctgagattca ggagttgtct cagcctcaaa
6501 atccaatgag gtgctttaaa ctccatgaga aaatccacgt ttgtggtccc
6551 gggcacaatg aatcagattg cttttatgtc gatgttcggg taaaagggaa
6601 aattaccaag ggaaagggct tccactgtga acctgtgtat tccgcaggct
6651 ctggccaact tggtactgtt aagtgggcat cctctttccg ctcctcacta
6701 gcatgtcctt tgagggactc tgctgttgag gcctttaagc ggggagagtg
6751 tatatacttc agagacaatg gtgagttaat caatgcttgg ttagccgcta
6801 ttaactttgg tatgtccatt aatgcagatg ggttggatgg ccttctccag
6851 gtctatcgca accaagggcc aacacatctt gatgatttga gtttttactt
6901 tgaaggtggt gttgttggcg ttccagctcc tgcacatcta atggtctatg
6951 gcaccgatat cccgatgctc aatcgtttgt gtcccaagac tattcttgag
7001 agtgctcccc ctcctggacg ttcagacaac gtgagtgaac gtggccaagt
7051 ccagacattc ttgcacatga gtccaaaacc ttgttttata actatcaagg
7101 gctcgcgtaa ggtgtgcttt ggtttgcgtt gcaaagaaac atgtcggggt
7151 cacatttcgt gcattgatgt agtgcgcaat tctgtgacca accataaagc
7201 ggcgatgctg gacgtgctga ggaaaggctg ttttaatatc cagtaggggc
7251 tggattcaac taggcaagcc ggcagacttc gtgtgctgct accacggaat
7301 tacgtggttt tagctgacac cttactgtcg ttttattatt ttgttttaga
7351 ataataatcg gctagtttcg ccgagaagga aacgtgctgg agccacacca
7401 aaattctgat actatatgtt ccgtgaaatc ggtaatcaga taagtgccaa
7451 actctacgac gctttggggg cgtatgaagt agataccctg ttaataaagg
7501 gttccgtgaa atcggtatgt ggcaactctc tgaaactcag tctctaaggt
7551 gtgggagcaa cccctcggct ccgggttaac tgagccaact aaagctgtgc
7601 catgtgagtt tgtgttttac acatggcccc tacaagtcta gacaacttgt
7651 aggttcagcg gtactgttaa gtgtctttct tctggtggtg acgttccaga
7701 gcagtatgac gagttttcca atttatcagt aaattggagc cgattgcaga
7751 gtcggtggtg aaaggtgtgc tacggctagt tccgtaggca taataagcca
7801 aactatctgt tttaatgctt cgagtcatag ttagatttct ttctgtagct
7851 ccctctttga ggttgtgcct ttagcaagca cacaaaaata tgcatttgtt
7901 tttgttctta aacttcctta gtgttgttct gtcag