Sequence of DPV Raspberry ringspot virus
Raspberry ringspot virus grapevine strain RNA 2 complete sequence.
ACC No: AY310445
Dated: 2006-03-12 | Length: 3912 | CRC: 1161343640
ID AY310445 standard; genomic RNA; VRL; 3912 BP.
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AC AY310445;
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SV AY310445.1
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DT 12-MAR-2006 (Rel. 87, Created)
DT 12-MAR-2006 (Rel. 87, Last updated, Version 1)
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DE Raspberry ringspot virus grapevine strain RNA 2 complete sequence.
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KW .
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OS Raspberry ringspot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Comoviridae;
OC Nepovirus; Subgroup A.
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RN [1]
RP 1-3912
RA Wetzel T., Ebel R., Moury B., Le Gall O., Endisch S., Reustle G.M.,
RA Krczal G.;
RT "Sequence analysis of grapevine isolates of Raspberry ringspot nepovirus";
RL Arch. Virol. 151(3):599-606(2006).
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RN [2]
RP 1-3912
RA Ebel R., Schnabel A., Reustle G.M., Krczal G., Wetzel T.;
RT ;
RL Submitted (27-MAY-2003) to the EMBL/GenBank/DDBJ databases.
RL Staatliche Lehr- und Forschungsanstalt, Centrum Gruene Gentechnik,
RL Breitenweg 71, Neustadt an der Weinstrasse D-67435, Germany
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FH Key Location/Qualifiers
FH
FT source 1. .3912
FT /organism="Raspberry ringspot virus"
FT /segment="RNA 2"
FT /strain="grapevine"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:12809"
FT CDS 197. .3520
FT /codon_start=1
FT /product="polyprotein 2"
FT /protein_id="AAQ77239.1"
FT /translation="MSQFWGEFPEAVINTFQRLQIALIGDIKRCPLSSPLFPELSKLDA
FT HSQHHLLASFELPKFGGVTPSVMEQLHDAESELAEAKARLLRERLHAVANKENIPYLGD
FT CMFYDAPGISQEELLQAAFLEAPTPEWESERIRPLWPKDEWFRDAQQGPYPEDYGSIPL
FT GDIDTLCLAFDALVEEHWMPIYLMISTFATFQQYGTHPLLLECVQSAGSLIPACMMTDH
FT HLQPTGDRQADKEERQDYADSQDSIQSMGDFWKEFYSKDSGKKIPDSHKSRLANDPNKV
FT GFTKSALFHKQPLAHSLAQTWANFRGTQDKADLVKVTMDMNIEKYTVRLPDAVRTTAGP
FT LYIEWINLPRMSENSARKLAEAGWNNADICGVDLAVKSHVAVGTPVRVIISLVDGACSD
FT MPTATMCAFEVNLATQNNRSLNLPLLSLPFSQLLADLHDFQHRVKIACQFRDPEGFNVG
FT TPMLSFSSLEFSELKQTAFERKSLLRDSWSEIEKRACHGGGRCIASQGIVQTWEKEINP
FT PLKEYAPLVLPPVPQPRRNFIGQQSGEVVKPWLPKSRSMRFKSPTDLWSRPSVDGGSTS
FT TVVTGTEHLRCDDVPGCAYEVDPLHLLYYASVDVPKDTLEGTRLARIDLRAKAQEMDSA
FT VWRQWVKEGCMKPRIKIRISAATSCFSGVVLGMCLDAYRRIPIMRDKGFSANLVTGLPN
FT TMWATRTQAELEWDLDLSQECGHSFYALSDTLGYMDFLIYVLRGNEMTAVADWSFYVAF
FT YVDWSQESFTAMLAPTLKWPPTPGIISTFKEVRGPYAFSLDGTKARLDFGFLPGVSLVE
FT GSETVRTCPRVLASFYRSWTGKLRISIEEVSSIFLTGSYMVGVAWNAGDDLGGITTRKH
FT WMVKSGEIFDLDLYGPHGEYPTFAGKANGTPYIVVQKVGGIVGPKDSTGSFGFFLHIHG
FT MTGIYKNPTLHSPERGQMHAWFRMNNIQVDNLSFSIPGRIEDMSALAGSYDITNYVNPA
FT SLLFSVTGLHGGTIRLHVTWCPKTNLGESKGTLKYMQYLYHTNTVSYYGDQATRGLIDP
FT DGFKCELRCGDFFGATNIAMVGDVERLAIHSANATFISEIRVSFEILEMSFYGKTIKVS
FT "
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SQ Sequence 3912 BP; 937 A; 880 C; 945 G; 1150 T; 0 other;
ay310445 Length: 3912 12-MAR-2006 Type: N Check: 5377 ..
1 ttgtctttaa tctcagtccc attattgtag ctctcttatc tcaatctctg
51 aacctctctc ttattgtgat atctcagcaa catccctgca ctttgtgaca
101 acgtaaagtt ttccggaagt tttcttttaa tcgttcaata aatttccaat
151 tttctattct tccctatttc tcttatagtt gtgtattact ggcacaatgt
201 cccagttctg gggagaattc cccgaggctg ttattaacac ctttcagcgc
251 ctgcaaatag cgctgattgg tgacattaag agatgtcccc tctcttcccc
301 cctcttcccc gagctttcca agctcgatgc ccactcccag catcatctgc
351 tggcttcctt cgaacttcca aagttcggag gagttactcc tagcgtcatg
401 gaacagctcc atgatgcgga gtccgaattg gctgaggcca aggcaagact
451 ccttcgcgaa cggctacacg cggtagccaa caaagaaaac atcccctatc
501 ttggggattg tatgttctat gatgcacctg gcatcagtca ggaggagctg
551 cttcaggcag cttttcttga agctcccaca cctgagtggg aaagtgaacg
601 aattaggcct ttgtggccta aggacgaatg gtttagggac gcccaacaag
651 gtccctaccc tgaggattat ggtagtattc ccctgggtga tatagacaca
701 ctgtgtctgg cttttgatgc tcttgtggag gaacattgga tgcctatcta
751 cctgatgata tccacgtttg ccacgtttca gcagtatggt actcacccac
801 tattgctgga atgtgtgcaa tctgcaggta gtctgattcc tgcgtgcatg
851 atgactgacc atcacctaca accaacgggt gataggcagg ccgacaagga
901 agagcggcag gattatgcgg acagccagga ctctattcag agcatgggtg
951 atttctggaa ggaattctat tcaaaggatt ctggaaagaa aatccctgac
1001 tcccacaagt caaggctggc taatgatccc aacaaagttg gttttacgaa
1051 gagtgcgctt ttccataagc agcccctggc gcattcatta gctcaaactt
1101 gggctaactt taggggtacc caggataagg cggacctggt caaagtgacc
1151 atggacatga atattgagaa atatactgtc cgtcttcccg atgcagttcg
1201 tactacggca ggaccactat acattgagtg gattaatctg ccacgaatgt
1251 ctgaaaattc tgcacgtaaa ctagcagaag ctgggtggaa caatgcagat
1301 atttgtgggg tggatcttgc cgtgaagtcg catgttgcag ttggcacgcc
1351 agtccgtgtt atcatctctt tggtagatgg tgcatgctct gatatgccca
1401 cggcaacgat gtgcgctttt gaggtgaact tggcaacaca gaacaaccgg
1451 tcactaaatc ttccgctgct tagtttaccc ttctcacaac tgctcgccga
1501 tttgcatgat ttccaacatc gtgtcaagat cgcttgccaa tttcgggacc
1551 cggaaggatt caatgtgggt actcccatgt tgagtttttc ctcgctcgaa
1601 ttttctgagc tgaagcaaac cgctttcgag cggaaatctt tactcagaga
1651 ttcctggtct gaaatagaaa agcgtgcttg ccatggtgga ggacgttgta
1701 tcgcctccca gggtattgtg cagacctggg agaaggagat taatcctcct
1751 ttaaaagaat atgcaccctt ggttttacct cccgttcccc agcccagaag
1801 gaactttatt ggccaacaat ctggggaggt tgtcaaacca tggcttccaa
1851 agtcccgctc catgcgattt aaatcgccca ctgatttatg gagcaggccc
1901 tctgtagatg ggggttcaac atctaccgtg gttacaggaa ctgaacactt
1951 gcgttgcgat gatgtaccag gttgtgcgta tgaggtcgat cctctgcacc
2001 tcctatatta tgcaagtgtt gacgttccta aagatactct tgaaggcact
2051 aggcttgcgc gtattgattt gcgcgcaaag gctcaggaaa tggatagtgc
2101 cgtgtggcgc cagtgggtta aagaagggtg tatgaagccg cgcattaaga
2151 tccgtatatc agcggctacc tcctgttttt ctggcgtagt tctaggaatg
2201 tgcctggatg cttatcgcag aatccctatc atgcgtgata aaggatttag
2251 cgccaatctt gtcacaggtc ttcctaatac tatgtgggcg acccgcacgc
2301 aggcggaact tgaatgggat cttgaccttt cacaggagtg tggccatagc
2351 ttctacgccc tatctgacac ccttgggtac atggattttt taatctacgt
2401 actcaggggt aatgaaatga cggcagtagc agactggtca ttttatgtgg
2451 ccttctatgt ggactggtcc caggagagtt ttactgcaat gcttgctcca
2501 acattgaagt ggcctcccac accgggaata atatccactt ttaaggaagt
2551 gcgaggacct tatgctttta gtcttgatgg taccaaagca cgccttgatt
2601 ttggtttttt acctggtgtt tcccttgttg aaggtagtga aaccgtgagg
2651 acctgtcctc gtgttctcgc tagcttttac cgttcatgga ctggcaaatt
2701 gaggatttcc atagaggaag tttcctctat tttcctcacc ggttcatata
2751 tggtaggggt tgcatggaat gctggggatg atcttggtgg aatcaccacc
2801 cggaaacatt ggatggtcaa atcaggggag atctttgatt tagatctgta
2851 tgggccccat ggagaatatc ccacctttgc aggtaaagca aatggtacac
2901 catatatcgt tgtgcagaag gttgggggta tcgttggtcc aaaggattct
2951 actggatctt ttggtttttt cctgcatatc catggcatga caggaattta
3001 caagaatccc actcttcaca gtccggagcg gggtcaaatg catgcatggt
3051 ttcgtatgaa taatatccag gtggacaatt tgtcctttag catacctggt
3101 aggattgagg atatgagtgc gctggcaggg agttatgaca tcacgaatta
3151 cgtaaaccct gccagccttt tgttttccgt cactggccta catggtggta
3201 ctatcaggtt gcatgtcacc tggtgtccca agaccaattt gggtgaatcc
3251 aaaggtactc ttaagtacat gcagtatttg tatcacacga atactgttag
3301 ttactatgga gatcaagcca cacgtggact catagatcct gatggattca
3351 aatgtgagtt acgctgtggc gatttctttg gtgcaaccaa tatagccatg
3401 gtaggtgatg ttgaacgatt ggctatccac tccgccaatg ccacttttat
3451 ttctgaaata cgtgtttcct ttgaaattct tgagatgagt ttctatggga
3501 aaactattaa ggtctcatga ggtggtactg attaccctat ggctccgggt
3551 taattgagcc aactaaagct gtgccatgtg agtttgtgtt ttacacatgg
3601 cccctacaag tctagacaac ttgtaggttc agcggtactg ttaagtgtct
3651 ttcttctggt ggtgacgttc cagagcagta tgacgagttt tccaatttat
3701 cagtaaattg gagccgattg cagagtcggt ggtgaaaggt gtgctacggc
3751 tagttccgta ggcataataa gccaaactat ctgttttaat gcttcgagtc
3801 atagttagat ttctttctgt agctccctct ttgaggttgt gcctttagca
3851 agcacacaaa aatatgcatt tgtttttgtt cttaagcttc cttagtgttg
3901 ttctgtccga ac