Sequence of DPV Turnip crinkle virus
Turnip crinkle virus isolate UK, complete genome.
ACC No: AY312063
Dated: 2003-07-01 | Length: 4053 | CRC: -1980710673
!!NA_SEQUENCE 1.0 ID AY312063 standard; RNA; VRL; 4053 BP. XX AC AY312063; XX SV AY312063.1 XX DT 01-JUL-2003 (Rel. 76, Created) DT 01-JUL-2003 (Rel. 76, Last updated, Version 1) XX DE Turnip crinkle virus isolate UK, complete genome. XX KW . XX OS Turnip crinkle virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae; OC Carmovirus. XX RN [1] RP 1-4053 RA Ryabov E.V.; RT ; RL Submitted (03-JUN-2003) to the EMBL/GenBank/DDBJ databases. RL Plant Pathology, Horticulture Research International, East Malling, West RL Malling, Kent ME19 6BJ, United Kingdom XX FH Key Location/Qualifiers FH FT source 1. .4053 FT /db_xref="taxon:11988" FT /mol_type="genomic RNA" FT /note="infectious clone" FT /organism="Turnip crinkle virus" FT /isolate="UK" FT CDS 63. .2390 FT /codon_start=1 FT /note="RNA replicase; translated by read-through of stop FT codon" FT /transl_except=(pos:813. .815,aa:OTHER) FT /product="P88 protein" FT /protein_id="AAP78486.1" FT /translation="MPLLHTLNTALAVGLLGARYYPEVQTFLGLPDYVGHMKNVVQSVF FT QGSGLVVVSSSTVGVRGTYSNRGQIGSSLGCILAVPDSGADIEIDLDRLVGTEEEATSC FT LVEAVGSTADVPRRRVRQKGRFAMHAVNAAKLHFCGVPKPTEANRLAVSKWLVQYCKER FT HVVDSHIRTIVNTALPRVFTPDAEDIQVVLDLHSVRAHNHRNALAEAGKVRKWWVNLAM FT HPMTGRSWSRAWRRLCRLPDDQAISFVRXGCLRELVGRETQISRGENPAMRVFPLANPP FT KVRRIFHICGMGNGLDFGVHNNSLNNLRRGLMERVFYVEDAQKQLKPAPQPIPGIFGKL FT SGIRKRLVRLAGNHTPVPREKYPSFYKGRRATIYQKALDSLHDRPVSRKDAELKTFVKA FT EKINFTAKKDPAPRVIQPRDPRYNIEVGKYLKPYEHHLYRAIDAMWGGPTVLKGYDVGE FT LGNIMSNTWDKFRKTCAIGFDMKRFDQHVSVDALRWEHSVYNAGFNCPELAQLLTWQLT FT NKGVGRASDGFIKYQVDGCRMSGDVNTALGNCLLACSITKYLMKGIKCKLINNGDDCVL FT FFEAEEVDRVRERLHHWIDFGFQCIAEEPQYELEKVEFCQMSPIFDGEGWVMVRNPRVS FT LSKDSYSTTQWANEKDAARWLAAIGECGLAIAGGVPVLQSYYSCLKRNFGPLAGDYKKK FT MQDVSFDSGFYRLSKNGMRGSKNVSQDARFSFYRGFGYTPDEQEALEEYYDNLELLCEW FT DPTGYKEELSDRWILNEFPTTL" FT CDS 63. .815 FT /codon_start=1 FT /product="P28 protein" FT /protein_id="AAP78490.1" FT /translation="MPLLHTLNTALAVGLLGARYYPEVQTFLGLPDYVGHMKNVVQSVF FT QGSGLVVVSSSTVGVRGTYSNRGQIGSSLGCILAVPDSGADIEIDLDRLVGTEEEATSC FT LVEAVGSTADVPRRRVRQKGRFAMHAVNAAKLHFCGVPKPTEANRLAVSKWLVQYCKER FT HVVDSHIRTIVNTALPRVFTPDAEDIQVVLDLHSVRAHNHRNALAEAGKVRKWWVNLAM FT HPMTGRSWSRAWRRLCRLPDDQAISFVR" FT CDS 2357. .2575 FT /codon_start=1 FT /product="P8 protein" FT /protein_id="AAP78487.1" FT /translation="MDPERIPYNSLSDSDAPGKRKKGGEKSAKKRLVASHAASSALNKK FT RDEGSASHGGTWVIVADKVEVSINFNF" FT CDS 2496. .2753 FT /codon_start=1 FT /product="P9 protein" FT /protein_id="AAP78488.1" FT /translation="MKVLLATGVLGLLLLIKWKSQSTSTSNQVCQCPTSPWVIYAFYNS FT LSLVLLLCHLIPEIKPIHTSYNTHDSSKQQHISINTGNGK" FT CDS 2743. .3798 FT /codon_start=1 FT /product="coat protein" FT /protein_id="AAP78489.1" FT /translation="MENDPRVRKFASEGAQWAIKWQKKGWSSLTSRQKQTARAAMGIKL FT SPVAQPVQKVTRLSAPVALAYREVSTQPRVSTARDGITRSGSELITTLKKNTDTEPKYT FT TAVLNPSEPGTFNQLIKEAAQYEKYRFTSLRFRYSPMSPSTTGGKVALAFDRDAAKPPP FT NDLASLYNIEGCVSSVPWTGFILTVPTDSTDRFVADGISDPKLVNFGKLIMATYGQGAN FT DAAQLGEVRVEYTVQLKNRTGSTSDAQIGDFAGVKDGPRLVSWSKTKGTAGWEHDCHFL FT GTGNFSLTLFYEKAPVSGLENADASDFSVLGEAAAGSVQWAGVKVAERGQSVKMVTTEE FT QPRGKWQALRI" XX SQ Sequence 4053 BP; 1091 A; 981 C; 1106 G; 875 T; 0 other; AY312063 Length: 4053 July 8, 2003 08:46 Type: N Check: 6713 .. 1 gtaatctgca aatccctggc acccgcctaa aattgccctc atcaaccttc 51 tctcttttca cgatgcctct cctacataca ctcaacacag cgctcgcagt 101 gggactccta ggagccaggt actaccctga ggtgcaaacc ttcttggggc 151 tacctgacta cgtgggtcac atgaagaatg tagtacaatc tgttttccag 201 ggatctgggc tagtagtagt gtcctccagc acagtcggtg ttagggggac 251 gtatagtaat agaggtcaga taggtagtag tctcgggtgt atactagccg 301 ttccggatag cggggcggac atagaaatag acttagatag gttggtagga 351 acggaagagg aagccacgtc ctgtctggtg gaggcggtag gtagtaccgc 401 agatgtcccc aggaggagag tccgtcaaaa ggggcggttt gccatgcatg 451 ccgtcaacgc agccaagctg cacttttgtg gcgttccgaa acccactgaa 501 gcgaatcgac tagcggtctc aaaatggctt gtccaatact gcaaagagag 551 acatgtcgta gacagccaca tcagaacgat agtcaatacg gctcttccaa 601 gagtgtttac gcctgacgcg gaagacattc aggttgtgct ggatttgcac 651 agtgtcagag cacacaacca ccgcaacgcg ctagccgaag caggcaaagt 701 gcggaagtgg tgggtcaacc tcgcgatgca tcccatgaca gggaggtcgt 751 ggtctagggc ttggaggcga ttatgccgcc tgcctgacga ccaggcgatc 801 tcttttgtcc gctaggggtg cttgcgggag ctggtcggga gggagactca 851 aatctccagg ggtgaaaacc cggccatgcg cgtgttcccg ttagcaaatc 901 ccccgaaggt tcgacgcatc ttccatatct gtggaatggg caatggttta 951 gactttggag tccacaacaa ctcactcaac aatttgagaa gagggttaat 1001 ggagagagtc ttttacgttg aagatgcgca gaagcaattg aaaccagccc 1051 cccaaccgat cccagggata ttcgggaagt tgagtgggat tcggaaacga 1101 ttggtcaggt tggccggaaa tcatacccct gtacctcggg agaaataccc 1151 gtcgttctac aagggcagga gggccaccat ttaccaaaaa gctctggatt 1201 ctctacatga cagaccggtg tcccggaagg acgctgaact caaaacattc 1251 gtgaaggcag aaaagatcaa tttcacggcg aagaaagacc cggctccacg 1301 ggttatccag ccgagagacc cacgatataa cattgaggtt gggaaatact 1351 tgaaaccgta cgagcaccat ttatatcggg caattgacgc tatgtggggt 1401 gggcccactg tgctgaaagg atacgatgtg ggggagcttg gaaacattat 1451 gagtaacacc tgggataaat tccggaaaac gtgtgcgata ggatttgaca 1501 tgaagagatt cgaccaacac gtatccgtgg acgccctacg atgggaacac 1551 agtgtataca acgcgggctt taactgtccc gagttggcac aactgctaac 1601 ttggcagttg accaacaagg gagttggaag agcctccgat ggctttatca 1651 aataccaagt tgatggttgt cgcatgtccg gggacgttaa cacagctttg 1701 ggtaactgcc tcttggcttg ctctatcacc aagtacttaa tgaagggaat 1751 caaatgcaaa ttaatcaaca atggagacga ttgtgtgctg ttcttcgaag 1801 ctgaggaagt tgacagggtg cgcgaaaggc tgcaccattg gatcgacttt 1851 gggtttcaat gcatagcaga agaaccacaa tacgagttgg agaaagttga 1901 gttttgccag atgtccccta tttttgatgg tgaagggtgg gtcatggtta 1951 gaaacccccg tgtgagcctt tccaaggata gctacagcac cacacaatgg 2001 gcgaatgaga aagatgcagc cagatggttg gcggctatcg gagagtgtgg 2051 cttggctatt gcaggtggcg taccagtgtt acaatcatat tattcttgcc 2101 tgaagaggaa ttttggaccc ctggccgggg actacaagaa gaagatgcaa 2151 gatgtttcct ttgatagtgg attctacagg ttatccaaaa acgggatgag 2201 gggcagcaaa aatgtgtccc aagatgctag gttcagcttt taccgggggt 2251 tcggctacac tccagacgag caggaagcgc ttgaggaata ctacgacaac 2301 ctcgaactgc tctgtgagtg ggaccccacg ggatataaag aagaacttag 2351 tgatagatgg atcctgaacg aattccctac aactctctaa gcgacagcga 2401 cgcaccagga aaacggaaga aaggcggaga gaaaagtgcg aagaagagat 2451 tggtagctag ccacgcggct agctctgctt taaacaagaa aagagatgaa 2501 ggttctgcta gccacggggg tacttgggtt attgttgctg ataaagtgga 2551 agtctcaatc aacttcaact tctaatcagg tttgccagtg cccgacgtcc 2601 ccgtgggtaa tatatgcttt ctacaactct ctctcactgg tcctcctact 2651 ctgtcatctg attcctgaaa tcaaaccgat tcacacatcc tacaacacac 2701 acgactcatc gaagcagcaa cacataagca tcaacactgg aaatggaaaa 2751 tgatcctaga gtccgaaagt tcgcatccga gggcgcccaa tgggcgataa 2801 agtggcagaa gaagggctgg tcatccctaa ccagcagaca gaaacagacc 2851 gcccgcgcag cgatggggat caagctctcc cctgtggcgc aacctgtgca 2901 gaaagtgact cgactgagtg ctccggtggc tctcgcctac cgcgaggttt 2951 ccacccagcc tcgggtttct actgccaggg acggcataac cagaagcggt 3001 tctgaactga tcacaaccct gaagaagaac actgacactg aacctaagta 3051 caccacagct gtgcttaacc caagcgaacc cggaacattc aaccaactca 3101 tcaaggaggc ggcccagtat gaaaaatacc gattcacgtc actcagattt 3151 aggtactctc ccatgagccc ttcaaccacc gggggcaagg tggctctggc 3201 attcgaccga gacgctgcca aacctccgcc caacgacctc gcttccctct 3251 acaacataga gggttgtgta tctagcgtgc cctggacagg gtttattttg 3301 accgtcccaa cagattctac tgaccgcttt gtggcggatg gtatcagcga 3351 tccaaagctt gtcaatttcg gcaagctcat catggccacc tatggccaag 3401 gagccaatga tgccgcccaa ctcggtgaag tgcgagtcga gtacaccgtg 3451 cagctcaaga acagaactgg ctcaaccagc gacgcccaga ttggggactt 3501 cgcgggtgtt aaggacggac ccaggttggt ctcgtggtcc aagaccaagg 3551 gaacagctgg gtgggagcac gattgtcatt ttctcggaac cggaaacttc 3601 tcgttgacac tgttctacga gaaggcgccc gtttcggggc tagaaaacgc 3651 agacgcctct gacttctcgg tcctgggaga agccgcagca ggtagtgtcc 3701 aatgggctgg agtgaaggta gcagaaaggg gacaaagcgt gaaaatggtc 3751 acaactgagg agcagccaag gggaaaatgg caagcactca ggatttagta 3801 cggtaatagt gtagtcttct catcttagta gttagctctc tcttatatta 3851 agaaaagaaa acaaaaaccc ccaggtcgct ttattttgac ctgtgttagg 3901 gaccaaaaac ggtggcagca ctgtctagct gcgggcatta gactggaaaa 3951 ctaatgctct ttgggtaacc actaaaatcc cgaaagggtg ggctgtggtg 4001 accttccaag ccaaaagata gcctctcccc tcgcgcgggg ggggggcctg 4051 ccc