Sequence of DPV Turnip crinkle virus
Turnip crinkle virus isolate UK, complete genome.
ACC No: AY312063
Dated: 2003-07-01 | Length: 4053 | CRC: -1980710673
!!NA_SEQUENCE 1.0
ID AY312063 standard; RNA; VRL; 4053 BP.
XX
AC AY312063;
XX
SV AY312063.1
XX
DT 01-JUL-2003 (Rel. 76, Created)
DT 01-JUL-2003 (Rel. 76, Last updated, Version 1)
XX
DE Turnip crinkle virus isolate UK, complete genome.
XX
KW .
XX
OS Turnip crinkle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Carmovirus.
XX
RN [1]
RP 1-4053
RA Ryabov E.V.;
RT ;
RL Submitted (03-JUN-2003) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, Horticulture Research International, East Malling, West
RL Malling, Kent ME19 6BJ, United Kingdom
XX
FH Key Location/Qualifiers
FH
FT source 1. .4053
FT /db_xref="taxon:11988"
FT /mol_type="genomic RNA"
FT /note="infectious clone"
FT /organism="Turnip crinkle virus"
FT /isolate="UK"
FT CDS 63. .2390
FT /codon_start=1
FT /note="RNA replicase; translated by read-through of stop
FT codon"
FT /transl_except=(pos:813. .815,aa:OTHER)
FT /product="P88 protein"
FT /protein_id="AAP78486.1"
FT /translation="MPLLHTLNTALAVGLLGARYYPEVQTFLGLPDYVGHMKNVVQSVF
FT QGSGLVVVSSSTVGVRGTYSNRGQIGSSLGCILAVPDSGADIEIDLDRLVGTEEEATSC
FT LVEAVGSTADVPRRRVRQKGRFAMHAVNAAKLHFCGVPKPTEANRLAVSKWLVQYCKER
FT HVVDSHIRTIVNTALPRVFTPDAEDIQVVLDLHSVRAHNHRNALAEAGKVRKWWVNLAM
FT HPMTGRSWSRAWRRLCRLPDDQAISFVRXGCLRELVGRETQISRGENPAMRVFPLANPP
FT KVRRIFHICGMGNGLDFGVHNNSLNNLRRGLMERVFYVEDAQKQLKPAPQPIPGIFGKL
FT SGIRKRLVRLAGNHTPVPREKYPSFYKGRRATIYQKALDSLHDRPVSRKDAELKTFVKA
FT EKINFTAKKDPAPRVIQPRDPRYNIEVGKYLKPYEHHLYRAIDAMWGGPTVLKGYDVGE
FT LGNIMSNTWDKFRKTCAIGFDMKRFDQHVSVDALRWEHSVYNAGFNCPELAQLLTWQLT
FT NKGVGRASDGFIKYQVDGCRMSGDVNTALGNCLLACSITKYLMKGIKCKLINNGDDCVL
FT FFEAEEVDRVRERLHHWIDFGFQCIAEEPQYELEKVEFCQMSPIFDGEGWVMVRNPRVS
FT LSKDSYSTTQWANEKDAARWLAAIGECGLAIAGGVPVLQSYYSCLKRNFGPLAGDYKKK
FT MQDVSFDSGFYRLSKNGMRGSKNVSQDARFSFYRGFGYTPDEQEALEEYYDNLELLCEW
FT DPTGYKEELSDRWILNEFPTTL"
FT CDS 63. .815
FT /codon_start=1
FT /product="P28 protein"
FT /protein_id="AAP78490.1"
FT /translation="MPLLHTLNTALAVGLLGARYYPEVQTFLGLPDYVGHMKNVVQSVF
FT QGSGLVVVSSSTVGVRGTYSNRGQIGSSLGCILAVPDSGADIEIDLDRLVGTEEEATSC
FT LVEAVGSTADVPRRRVRQKGRFAMHAVNAAKLHFCGVPKPTEANRLAVSKWLVQYCKER
FT HVVDSHIRTIVNTALPRVFTPDAEDIQVVLDLHSVRAHNHRNALAEAGKVRKWWVNLAM
FT HPMTGRSWSRAWRRLCRLPDDQAISFVR"
FT CDS 2357. .2575
FT /codon_start=1
FT /product="P8 protein"
FT /protein_id="AAP78487.1"
FT /translation="MDPERIPYNSLSDSDAPGKRKKGGEKSAKKRLVASHAASSALNKK
FT RDEGSASHGGTWVIVADKVEVSINFNF"
FT CDS 2496. .2753
FT /codon_start=1
FT /product="P9 protein"
FT /protein_id="AAP78488.1"
FT /translation="MKVLLATGVLGLLLLIKWKSQSTSTSNQVCQCPTSPWVIYAFYNS
FT LSLVLLLCHLIPEIKPIHTSYNTHDSSKQQHISINTGNGK"
FT CDS 2743. .3798
FT /codon_start=1
FT /product="coat protein"
FT /protein_id="AAP78489.1"
FT /translation="MENDPRVRKFASEGAQWAIKWQKKGWSSLTSRQKQTARAAMGIKL
FT SPVAQPVQKVTRLSAPVALAYREVSTQPRVSTARDGITRSGSELITTLKKNTDTEPKYT
FT TAVLNPSEPGTFNQLIKEAAQYEKYRFTSLRFRYSPMSPSTTGGKVALAFDRDAAKPPP
FT NDLASLYNIEGCVSSVPWTGFILTVPTDSTDRFVADGISDPKLVNFGKLIMATYGQGAN
FT DAAQLGEVRVEYTVQLKNRTGSTSDAQIGDFAGVKDGPRLVSWSKTKGTAGWEHDCHFL
FT GTGNFSLTLFYEKAPVSGLENADASDFSVLGEAAAGSVQWAGVKVAERGQSVKMVTTEE
FT QPRGKWQALRI"
XX
SQ Sequence 4053 BP; 1091 A; 981 C; 1106 G; 875 T; 0 other;
AY312063 Length: 4053 July 8, 2003 08:46 Type: N Check: 6713 ..
1 gtaatctgca aatccctggc acccgcctaa aattgccctc atcaaccttc
51 tctcttttca cgatgcctct cctacataca ctcaacacag cgctcgcagt
101 gggactccta ggagccaggt actaccctga ggtgcaaacc ttcttggggc
151 tacctgacta cgtgggtcac atgaagaatg tagtacaatc tgttttccag
201 ggatctgggc tagtagtagt gtcctccagc acagtcggtg ttagggggac
251 gtatagtaat agaggtcaga taggtagtag tctcgggtgt atactagccg
301 ttccggatag cggggcggac atagaaatag acttagatag gttggtagga
351 acggaagagg aagccacgtc ctgtctggtg gaggcggtag gtagtaccgc
401 agatgtcccc aggaggagag tccgtcaaaa ggggcggttt gccatgcatg
451 ccgtcaacgc agccaagctg cacttttgtg gcgttccgaa acccactgaa
501 gcgaatcgac tagcggtctc aaaatggctt gtccaatact gcaaagagag
551 acatgtcgta gacagccaca tcagaacgat agtcaatacg gctcttccaa
601 gagtgtttac gcctgacgcg gaagacattc aggttgtgct ggatttgcac
651 agtgtcagag cacacaacca ccgcaacgcg ctagccgaag caggcaaagt
701 gcggaagtgg tgggtcaacc tcgcgatgca tcccatgaca gggaggtcgt
751 ggtctagggc ttggaggcga ttatgccgcc tgcctgacga ccaggcgatc
801 tcttttgtcc gctaggggtg cttgcgggag ctggtcggga gggagactca
851 aatctccagg ggtgaaaacc cggccatgcg cgtgttcccg ttagcaaatc
901 ccccgaaggt tcgacgcatc ttccatatct gtggaatggg caatggttta
951 gactttggag tccacaacaa ctcactcaac aatttgagaa gagggttaat
1001 ggagagagtc ttttacgttg aagatgcgca gaagcaattg aaaccagccc
1051 cccaaccgat cccagggata ttcgggaagt tgagtgggat tcggaaacga
1101 ttggtcaggt tggccggaaa tcatacccct gtacctcggg agaaataccc
1151 gtcgttctac aagggcagga gggccaccat ttaccaaaaa gctctggatt
1201 ctctacatga cagaccggtg tcccggaagg acgctgaact caaaacattc
1251 gtgaaggcag aaaagatcaa tttcacggcg aagaaagacc cggctccacg
1301 ggttatccag ccgagagacc cacgatataa cattgaggtt gggaaatact
1351 tgaaaccgta cgagcaccat ttatatcggg caattgacgc tatgtggggt
1401 gggcccactg tgctgaaagg atacgatgtg ggggagcttg gaaacattat
1451 gagtaacacc tgggataaat tccggaaaac gtgtgcgata ggatttgaca
1501 tgaagagatt cgaccaacac gtatccgtgg acgccctacg atgggaacac
1551 agtgtataca acgcgggctt taactgtccc gagttggcac aactgctaac
1601 ttggcagttg accaacaagg gagttggaag agcctccgat ggctttatca
1651 aataccaagt tgatggttgt cgcatgtccg gggacgttaa cacagctttg
1701 ggtaactgcc tcttggcttg ctctatcacc aagtacttaa tgaagggaat
1751 caaatgcaaa ttaatcaaca atggagacga ttgtgtgctg ttcttcgaag
1801 ctgaggaagt tgacagggtg cgcgaaaggc tgcaccattg gatcgacttt
1851 gggtttcaat gcatagcaga agaaccacaa tacgagttgg agaaagttga
1901 gttttgccag atgtccccta tttttgatgg tgaagggtgg gtcatggtta
1951 gaaacccccg tgtgagcctt tccaaggata gctacagcac cacacaatgg
2001 gcgaatgaga aagatgcagc cagatggttg gcggctatcg gagagtgtgg
2051 cttggctatt gcaggtggcg taccagtgtt acaatcatat tattcttgcc
2101 tgaagaggaa ttttggaccc ctggccgggg actacaagaa gaagatgcaa
2151 gatgtttcct ttgatagtgg attctacagg ttatccaaaa acgggatgag
2201 gggcagcaaa aatgtgtccc aagatgctag gttcagcttt taccgggggt
2251 tcggctacac tccagacgag caggaagcgc ttgaggaata ctacgacaac
2301 ctcgaactgc tctgtgagtg ggaccccacg ggatataaag aagaacttag
2351 tgatagatgg atcctgaacg aattccctac aactctctaa gcgacagcga
2401 cgcaccagga aaacggaaga aaggcggaga gaaaagtgcg aagaagagat
2451 tggtagctag ccacgcggct agctctgctt taaacaagaa aagagatgaa
2501 ggttctgcta gccacggggg tacttgggtt attgttgctg ataaagtgga
2551 agtctcaatc aacttcaact tctaatcagg tttgccagtg cccgacgtcc
2601 ccgtgggtaa tatatgcttt ctacaactct ctctcactgg tcctcctact
2651 ctgtcatctg attcctgaaa tcaaaccgat tcacacatcc tacaacacac
2701 acgactcatc gaagcagcaa cacataagca tcaacactgg aaatggaaaa
2751 tgatcctaga gtccgaaagt tcgcatccga gggcgcccaa tgggcgataa
2801 agtggcagaa gaagggctgg tcatccctaa ccagcagaca gaaacagacc
2851 gcccgcgcag cgatggggat caagctctcc cctgtggcgc aacctgtgca
2901 gaaagtgact cgactgagtg ctccggtggc tctcgcctac cgcgaggttt
2951 ccacccagcc tcgggtttct actgccaggg acggcataac cagaagcggt
3001 tctgaactga tcacaaccct gaagaagaac actgacactg aacctaagta
3051 caccacagct gtgcttaacc caagcgaacc cggaacattc aaccaactca
3101 tcaaggaggc ggcccagtat gaaaaatacc gattcacgtc actcagattt
3151 aggtactctc ccatgagccc ttcaaccacc gggggcaagg tggctctggc
3201 attcgaccga gacgctgcca aacctccgcc caacgacctc gcttccctct
3251 acaacataga gggttgtgta tctagcgtgc cctggacagg gtttattttg
3301 accgtcccaa cagattctac tgaccgcttt gtggcggatg gtatcagcga
3351 tccaaagctt gtcaatttcg gcaagctcat catggccacc tatggccaag
3401 gagccaatga tgccgcccaa ctcggtgaag tgcgagtcga gtacaccgtg
3451 cagctcaaga acagaactgg ctcaaccagc gacgcccaga ttggggactt
3501 cgcgggtgtt aaggacggac ccaggttggt ctcgtggtcc aagaccaagg
3551 gaacagctgg gtgggagcac gattgtcatt ttctcggaac cggaaacttc
3601 tcgttgacac tgttctacga gaaggcgccc gtttcggggc tagaaaacgc
3651 agacgcctct gacttctcgg tcctgggaga agccgcagca ggtagtgtcc
3701 aatgggctgg agtgaaggta gcagaaaggg gacaaagcgt gaaaatggtc
3751 acaactgagg agcagccaag gggaaaatgg caagcactca ggatttagta
3801 cggtaatagt gtagtcttct catcttagta gttagctctc tcttatatta
3851 agaaaagaaa acaaaaaccc ccaggtcgct ttattttgac ctgtgttagg
3901 gaccaaaaac ggtggcagca ctgtctagct gcgggcatta gactggaaaa
3951 ctaatgctct ttgggtaacc actaaaatcc cgaaagggtg ggctgtggtg
4001 accttccaag ccaaaagata gcctctcccc tcgcgcgggg ggggggcctg
4051 ccc