Sequence of DPV Johnsongrass mosaic virus

Johnsongrass mosaic virus isolate Sha2003Q2 coat protein gene, partial cds.

ACC No: AY387810

Dated: 2004-08-13 | Length: 909 | CRC: -1383717330

                !!NA_SEQUENCE 1.0
ID   AY387810   standard; genomic RNA; VRL; 909 BP.
XX
AC   AY387810;
XX
SV   AY387810.1
XX
DT   09-OCT-2003 (Rel. 77, Created)
DT   13-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Johnsongrass mosaic virus isolate Sha2003Q2 coat protein gene, partial cds.
XX
KW   .
XX
OS   Johnsongrass mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-909
RX   PUBMED; 15290386.
RA   Laidlaw H.K., Persley D.M., Pallaghy C.K., Godwin I.D.;
RT   "Sequence diversity in the coat protein coding region of the genome RNA of
RT   Johnsongrass mosaic virus in Australia";
RL   Arch. Virol. 149(8):1633-1641(2004).
XX
RN   [2]
RP   1-909
RA   Laidlaw H.K.C., Persley D.M., Pallaghy C.K., Godwin I.D.;
RT   ;
RL   Submitted (11-SEP-2003) to the EMBL/GenBank/DDBJ databases.
RL   School of Land and Food Sciences, The University of Queensland, St Lucia
RL   Campus, Brisbane, Queensland 4072, Australia
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .909
FT                   /db_xref="taxon:31742"
FT                   /mol_type="genomic RNA"
FT                   /organism="Johnsongrass mosaic virus"
FT                   /isolate="Sha2003Q2"
FT   CDS             <1. .>909
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="AAQ91074.1"
FT                   /translation="SGNEDAGRQKSATPAANQTASGDGKSEQTTATTDNKSSSDNTSNA
FT                   QGTSQTKGDGESGGTNATAAKKDKDVDVGSTGTFVIPKLKKVSPKMRLPMVSNKAILNL
FT                   DHLIQYKPDQRDISNARATHTQFQFWYNRIKKEYDVNDEQMRILMNGLMVWCIENGTSP
FT                   DINGYWTMVDGNNQSEFPLKPIVENAKPTLRQCMMHFSDAAEAYIEMRNLDEPYMPRYG
FT                   LLRNLNDKSLARYAFDFYEINSRTPNRAREAHAQMKAAAIRGSTNHMFGLDGNVGESSE
FT                   NTERHTAADVSRNVHSYRGVKI"
XX
SQ   Sequence 909 BP; 321 A; 182 C; 216 G; 190 T; 0 other;

 AY387810  Length: 909  August 17, 2004 10:30  Type: N  Check: 8609  ..

       1  tcaggcaatg aggatgctgg gagacagaag agtgcaacac cagctgcaaa
      51  tcaaacagca agtggggatg gtaaatcaga acaaacgaca gcgacaacag
     101  ataacaagtc atcttcagat aacacttcaa acgctcaagg aacttcgcaa
     151  accaaaggag atggcgaatc gggtggaacg aatgctacag cagcaaagaa
     201  ggataaggat gttgacgttg gatcaactgg aacttttgtt atcccgaaat
     251  taaagaaggt ttcacctaag atgcgtctac ccatggtgag caacaaagcc
     301  atactcaatt tggaccatct aatccaatac aaaccagatc agagagacat
     351  ctcaaatgca cgagctacac acacacaatt ccagttctgg tacaacagaa
     401  tcaagaaaga gtatgatgtt aatgatgagc aaatgagaat tttgatgaat
     451  ggattgatgg tttggtgtat agagaatggc acatcccctg atataaatgg
     501  ttattggacc atggtagatg ggaacaatca atcagagttt ccactaaaac
     551  caatagtgga aaacgcaaaa ccaacattac gacagtgcat gatgcatttt
     601  agtgatgccg cagaagcata cattgaaatg agaaatttgg atgagccgta
     651  catgccaaga tacggtctcc ttaggaatct aaacgacaag agcctcgctc
     701  gatacgcgtt tgatttctat gagatcaatt cgcgcacacc aaatagagcg
     751  agagaggcac atgcacaaat gaaggcagca gcaattagag ggtccacgaa
     801  tcacatgttt ggactcgacg ggaatgttgg agagagctct gagaacacag
     851  agcggcacac agctgcagat gtctcacgga atgttcattc gtaccgtggg
     901  gtcaaaatc