Sequence of DPV Johnsongrass mosaic virus

Johnsongrass mosaic virus isolate Zma2002Q1 coat protein gene, partial cds.

ACC No: AY387819

Dated: 2004-08-13 | Length: 909 | CRC: -913145237

                !!NA_SEQUENCE 1.0
ID   AY387819   standard; genomic RNA; VRL; 909 BP.
XX
AC   AY387819;
XX
SV   AY387819.1
XX
DT   09-OCT-2003 (Rel. 77, Created)
DT   13-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Johnsongrass mosaic virus isolate Zma2002Q1 coat protein gene, partial cds.
XX
KW   .
XX
OS   Johnsongrass mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-909
RX   PUBMED; 15290386.
RA   Laidlaw H.K., Persley D.M., Pallaghy C.K., Godwin I.D.;
RT   "Sequence diversity in the coat protein coding region of the genome RNA of
RT   Johnsongrass mosaic virus in Australia";
RL   Arch. Virol. 149(8):1633-1641(2004).
XX
RN   [2]
RP   1-909
RA   Laidlaw H.K.C., Persley D.M., Pallaghy C.K., Godwin I.D.;
RT   ;
RL   Submitted (11-SEP-2003) to the EMBL/GenBank/DDBJ databases.
RL   School of Land and Food Sciences, The University of Queensland, St Lucia
RL   Campus, Brisbane, Queensland 4072, Australia
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .909
FT                   /db_xref="taxon:31742"
FT                   /mol_type="genomic RNA"
FT                   /organism="Johnsongrass mosaic virus"
FT                   /isolate="Zma2002Q1"
FT   CDS             <1. .>909
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="AAQ91083.1"
FT                   /translation="SGNEDAGRQKSAAPAANQTASGDGKQAQTTATAENKTSSDNTSNA
FT                   QGTSQTKGDGESGGTNATAAKKDKDVDVGSTGTFVIPKLKKVSPKMRLPMVSNKAILNL
FT                   DHLIQYKPDQRDISNARATHTQFQFWYNRIKKEYDVDDEQMRILMNGLMVWCIENGTSP
FT                   DINGYWTMVDGNNQSEFPLKPIVENAKPTLRQCMMHFSDAAEAYIEMRNLDEPYMPRYG
FT                   LLRNLNDKSLARYAFDFYEINSRTPNRAREAHAQMKAAAIRGSTNHMFGLDGNVGESSE
FT                   NTERHTAADVSRNVHSYRGAKI"
XX
SQ   Sequence 909 BP; 323 A; 184 C; 216 G; 186 T; 0 other;

 AY387819  Length: 909  August 17, 2004 10:30  Type: N  Check: 6066  ..

       1  tcaggcaatg aggatgctgg gagacagaag agtgcagcgc cagctgcgaa
      51  tcaaacagca agtggggatg gtaaacaagc acaaacaaca gcgacagcag
     101  aaaacaagac atcttcagat aacacttcaa acgctcaagg aacttcacaa
     151  accaaaggag atggcgaatc aggtggaacg aacgctacag cagcaaagaa
     201  ggataaggac gttgacgttg gatcaactgg aacttttgtt atcccgaaat
     251  taaagaaagt ttcacctaag atgcgtttac ccatggtgag caacaaagcc
     301  atactcaatt tggaccacct aatccagtac aaaccagatc agagagacat
     351  ctcaaatgca cgagctacac acacacaatt tcaattctgg tacaacagaa
     401  tcaagaaaga atatgatgtt gatgatgagc aaatgagaat tttgatgaat
     451  ggattgatgg tttggtgtat agagaatggc acatcccctg atataaatgg
     501  ttactggacc atggtagatg ggaacaatca atcagagttt ccactaaaac
     551  caatagtgga aaacgcaaaa ccaacattac gacagtgcat gatgcatttt
     601  agtgatgccg cagaagcata cattgaaatg agaaatttgg atgagccgta
     651  catgccaaga tacggtctcc ttaggaatct aaacgacaag agccttgctc
     701  gatacgcgtt tgatttctat gagatcaatt cgcgcacacc aaatagagcg
     751  agagaggcac atgcacaaat gaaggcagca gcaattagag ggtccacgaa
     801  tcacatgttt ggactcgacg ggaatgttgg agagagctct gagaacacag
     851  agcggcacac agctgcagat gtctcacgga atgttcattc gtaccgtggg
     901  gctaaaatc