Sequence of DPV Johnsongrass mosaic virus

Johnsongrass mosaic virus isolate Sbi2000Q1 coat protein gene, partial cds.

ACC No: AY387827

Dated: 2004-08-13 | Length: 909 | CRC: 873459983

                !!NA_SEQUENCE 1.0
ID   AY387827   standard; genomic RNA; VRL; 909 BP.
XX
AC   AY387827;
XX
SV   AY387827.1
XX
DT   09-OCT-2003 (Rel. 77, Created)
DT   13-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Johnsongrass mosaic virus isolate Sbi2000Q1 coat protein gene, partial cds.
XX
KW   .
XX
OS   Johnsongrass mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-909
RX   PUBMED; 15290386.
RA   Laidlaw H.K., Persley D.M., Pallaghy C.K., Godwin I.D.;
RT   "Sequence diversity in the coat protein coding region of the genome RNA of
RT   Johnsongrass mosaic virus in Australia";
RL   Arch. Virol. 149(8):1633-1641(2004).
XX
RN   [2]
RP   1-909
RA   Laidlaw H.K.C., Persley D.M., Pallaghy C.K., Godwin I.D.;
RT   ;
RL   Submitted (11-SEP-2003) to the EMBL/GenBank/DDBJ databases.
RL   School of Land and Food Sciences, The University of Queensland, St Lucia
RL   Campus, Brisbane, Queensland 4072, Australia
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .909
FT                   /db_xref="taxon:31742"
FT                   /mol_type="genomic RNA"
FT                   /organism="Johnsongrass mosaic virus"
FT                   /isolate="Sbi2000Q1"
FT   CDS             <1. .>909
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="AAQ91091.1"
FT                   /translation="SGNEDAGRQKSATPAANQTASGDGKPAQTTATTDNKPSSDNTSNA
FT                   QGTSQTKGDGGSGGTNATAAKKDKDVDVGSTGTFVIPKLKKVSPKMRLPMVSNKAILNL
FT                   DHLIQYKPDQRDISNARATHTQFQFWYNRIKKEYDVDDEQMRILMNGLMVWCIENGTSP
FT                   DINGYWTMADGKDQSEFPLKPIVENAKPTLRQCMMHFSDAAEAYIEMRNLDEPYMPRYG
FT                   LLRNLNDKSLARYAFDFYEINSRTPNRAREAHAQMKAAAIRGSTNHMFGLDGNVGESSE
FT                   NTERHTAADASRNVHSYHGAKI"
XX
SQ   Sequence 909 BP; 319 A; 188 C; 217 G; 185 T; 0 other;

 AY387827  Length: 909  August 17, 2004 10:30  Type: N  Check: 5597  ..

       1  tcaggcaatg aggatgctgg gagacagaag agcgcaacac cagctgcaaa
      51  tcaaacggca agtggggatg gtaaaccagc acaaacgaca gcgacaacag
     101  ataacaagcc atcttcagat aacacttcaa acgctcaagg aacttcacaa
     151  accaaaggag atggcggatc gggtgggacg aatgctacag cagcaaagaa
     201  ggataaggac gtcgacgttg gatcaactgg aactttcgtt atcccgaaat
     251  taaagaaggt ttcacctaag atgcgtttac ccatggtgag taataaagcc
     301  atactcaatt tggaccatct aatccaatac aaaccggacc agagagacat
     351  ctcaaatgca cgagccactc acacacaatt ccagttctgg tataacagaa
     401  tcaagaaaga atatgatgtt gatgatgagc aaatgagaat cttgatgaat
     451  ggactgatgg tttggtgtat agagaatggc acatcccctg acataaatgg
     501  ttattggacc atggcagatg ggaaagatca atcagagttt ccactaaaac
     551  caatagtgga aaacgcaaaa ccaacattac gacagtgcat gatgcatttt
     601  agtgatgccg cagaagcata cattgaaatg agaaatttgg atgagccgta
     651  catgccaaga tacggtctcc ttaggaatct aaatgataag agcctcgctc
     701  gatacgcatt tgatttctat gagatcaatt cgcgcacacc aaatagagcg
     751  agagaggcac atgcacaaat gaaggcagca gcaattagag ggtctacaaa
     801  tcacatgttt ggactcgatg ggaatgttgg agagagctct gagaacacag
     851  agcggcacac agctgcagat gcctcacgga atgttcattc gtaccatggg
     901  gccaaaatc