Sequence of DPV Duck circovirus

Muscovy duck circovirus isolate TC1/2002, complete genome.

ACC No: AY394721

Dated: 2004-10-01 | Length: 1988 | CRC: 1086123481

                !!NA_SEQUENCE 1.0
ID   AY394721   standard; circular genomic DNA; VRL; 1988 BP.
XX
AC   AY394721;
XX
SV   AY394721.1
XX
DT   01-OCT-2004 (Rel. 81, Created)
DT   01-OCT-2004 (Rel. 81, Last updated, Version 1)
XX
DE   Muscovy duck circovirus isolate TC1/2002, complete genome.
XX
KW   .
XX
OS   Muscovy duck circovirus
OC   Viruses; ssDNA viruses; Circoviridae; Circovirus.
XX
RN   [1]
RP   1-1988
RA   Lee M.S., Ou S.C., Shien J.H.;
RT   "Detection of goose and Muscovy duck circoviruses using polymerase chain
RT   reaction";
RL   Unpublished.
XX
RN   [2]
RP   1-1988
RA   Lee M.S., Ou S.C., Shien J.H.;
RT   ;
RL   Submitted (18-SEP-2003) to the EMBL/GenBank/DDBJ databases.
RL   Epidemiology Research Department, National Institute for Animal Health,
RL   Chung-Cheng Rd., Tansui, Taiwan 25101, Republic of China
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1988
FT                   /db_xref="taxon:257468"
FT                   /mol_type="genomic DNA"
FT                   /organism="Muscovy duck circovirus"
FT                   /isolate="TC1/2002"
FT   gene            48. .926
FT                   /gene="rep"
FT   CDS             48. .926
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q5WRK2"
FT                   /gene="rep"
FT                   /product="Rep"
FT                   /protein_id="AAR28041.1"
FT                   /translation="MAKSGNYSYKRWVFTINNPTFEDYVHVLEFSTLDNCKFAIVGEEK
FT                   GANGTPHLQGFLNLRSNARAAALEESLGGRAWLSRARGSDEDNEEYCSKESTYLRVGEP
FT                   GGKGRSSQLADATSAVLAGLPLTDVARKYPTTYVIFGRGLERLRHLIVETQRDWKTEVI
FT                   VLIGPPGTGKSRYAFEFPAENKYYKPRGKWWDGYSGNDVVVMDDFYGWVPYDDLLRITD
FT                   RYPLRVEFKGGMTQFVAKTLITTSNKEPRDWYRSEFDLSALYRRINKYLVYNVDKYEPA
FT                   PACSLPFPINY"
FT   CDS             complement(136. .399)
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q5WRK1"
FT                   /product="ORFC2"
FT                   /protein_id="AAR28042.1"
FT                   /translation="MSHRRAGRIDPYRLVHQLSGMSTLWSNILRYLRQIPGHERARLFL
FT                   PATLQGRQLSHCFGDSGIPEGEVYRSRPFPLRRLRTCNCRAC"
FT   CDS             complement(1151. .1924)
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q5WRK0"
FT                   /product="ORFC1"
FT                   /protein_id="AAR28043.1"
FT                   /translation="MRRSTYRRAYRARRRRRGLRRRFRRRRLRIGRPRRRFSVVTFKVT
FT                   RHTVFGFFGSGTGPTAAGRWQSLSLEDGAQYTDPPAQGNNICGLNMRWAMFGDTNSYMQ
FT                   GGKPQYHYPYDYYIIKGVAVTLRPAYNIYQKSKTQGSTIIDKDGQIVRTSTTGWAIDPY
FT                   GSTSSRRTWDPSRIHRRYFVPKPTIQGAGEGTKYSTFFLGGKNFTWINCSQDQVVHYGM
FT                   GMSLRKPDNATGDEGKYDIEAQFTFYIKFGQFTGF"
FT   CDS             1537. .1794
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q5WRJ9"
FT                   /product="ORFV2"
FT                   /protein_id="AAR28044.1"
FT                   /translation="MLVSGSQQPLLLCSSRKGSGTVAYPLACSYLCLQTLPISCSVHRC
FT                   CFLVLVGLCIEPHLLDLSSAISPLPSVQFRIRKIQIRYVW"
XX
SQ   Sequence 1988 BP; 454 A; 477 C; 492 G; 565 T; 0 other;

AY394721  Length: 1988  January 5, 2005 17:21  Type: N  Check: 4260  ..

       1  accggcgctt gtactccgta ctccagcaat ctacggcgag ccctgcaatg
      51  gctaagagtg gcaactactc ctacaaaagg tgggtcttta caattaataa
     101  ccctaccttt gaagattatg ttcatgtttt agagttcagc acgctcgaca
     151  attgcaagtt cgcaatcgtc ggagaggaaa agggcgcgaa cggtacacct
     201  caccttcagg gattcctgaa tctccgaagc aatgcgagag ctgccgccct
     251  tgaagagtcg ctgggaggaa gagcctggct ctctcgtgcc cggggatctg
     301  acgaagataa cgaagaatat tgctccaaag agtcgacata cctgagagtt
     351  ggtgaaccag gcggtaaggg tcgatcctcc cagctcgccg atgcgacatc
     401  cgctgtgctc gctggtctcc cgctgactga cgttgcccgg aagtatccga
     451  cgacttatgt tatctttggg cgtggcctcg aacgtcttcg tcacctgatc
     501  gttgaaacgc aacgtgattg gaagacagaa gtcatcgtct tgattggtcc
     551  gccagggacc ggaaagagcc gttatgcgtt tgaatttccc gccgaaaaca
     601  agtattacaa accacgcggg aagtggtggg acggttactc gggaaatgac
     651  gtagtcgtca tggacgactt ttatggttgg gtaccttacg atgatctgct
     701  tcggatcact gaccgttatc cgttacgtgt tgagtttaaa ggtggcatga
     751  cccagtttgt tgctaagacg ttgatcacaa ctagcaacaa agagccccgt
     801  gattggtata gaagtgagtt cgatctgtcc gccttatatc ggcgcattaa
     851  taagtatctt gtctataatg ttgacaagta tgaacctgcc cccgcttgtt
     901  ccctcccctt tccaataaac tactgagaca aagttgtcgt tttatgtctt
     951  tattaaggtg aacactcgaa agggatatac acttgggcag ctggttatgg
    1001  tgaacacttg aaagggatat acacttgggc agctggttat ggtgaacact
    1051  cgaaagggat atacacttgg gcagctggtt atggtgaaca ctcgaaaggg
    1101  atatacactt gggcagctgg gttaaggtta ggacaggacc acgtttatgc
    1151  ctagaacccg gtgaactgac caaacttgat gtaaaacgta aattgagctt
    1201  ctatatcata tttcccctcg tcgccggtcg cattatctgg ttttctgagg
    1251  ctcatgccca tgccgtaatg tactacttgg tcttgactgc aatttatcca
    1301  ggtgaagttt ttacctccta ggaaaaatgt agaatacttg gtgccttctc
    1351  ctgccccttg aattgttggt ttcggtacga agtaccgtct gtggattctc
    1401  gatgggtccc atgtcctcct gctgcttgtt gatccgtatg ggtcaatggc
    1451  ccatcctgta gttgatgtcc tcacgatttg cccgtccttg tcaatgatcg
    1501  ttgagccttg tgttttgctt ttttggtaaa tgttgtatgc tggtctcagg
    1551  gtcacagcaa ccccttttat tatgtagtag tcgtaagggt agtggtactg
    1601  tggcttaccc ccttgcatgt agctatttgt gtctccaaac attgcccatc
    1651  tcatgttcag tccacagatg ttgtttcctt gtgctggtgg gtctgtgtat
    1701  tgagccccat cttctagact taagctctgc catctccccg ctgccgtcgg
    1751  tccagttccg gatccgaaaa atccaaatac ggtatgtctg gtgactttga
    1801  acgtcactac tgaaaatctt cgtcttggtc gtccgatacg tagccttcgt
    1851  cttctgaatc tcctacgtag accccgcctc ctcctcctag cacgatatgc
    1901  acgccgatag gtgctgcgtc gcatctgcag tgtgggcagt gacttcctgt
    1951  aatgtataaa aagaccgcac aagcgccgtt atattatt