Sequence of DPV Duck circovirus
Muscovy duck circovirus isolate TC1/2002, complete genome.
ACC No: AY394721
Dated: 2004-10-01 | Length: 1988 | CRC: 1086123481
!!NA_SEQUENCE 1.0 ID AY394721 standard; circular genomic DNA; VRL; 1988 BP. XX AC AY394721; XX SV AY394721.1 XX DT 01-OCT-2004 (Rel. 81, Created) DT 01-OCT-2004 (Rel. 81, Last updated, Version 1) XX DE Muscovy duck circovirus isolate TC1/2002, complete genome. XX KW . XX OS Muscovy duck circovirus OC Viruses; ssDNA viruses; Circoviridae; Circovirus. XX RN [1] RP 1-1988 RA Lee M.S., Ou S.C., Shien J.H.; RT "Detection of goose and Muscovy duck circoviruses using polymerase chain RT reaction"; RL Unpublished. XX RN [2] RP 1-1988 RA Lee M.S., Ou S.C., Shien J.H.; RT ; RL Submitted (18-SEP-2003) to the EMBL/GenBank/DDBJ databases. RL Epidemiology Research Department, National Institute for Animal Health, RL Chung-Cheng Rd., Tansui, Taiwan 25101, Republic of China XX FH Key Location/Qualifiers FH FT source 1. .1988 FT /db_xref="taxon:257468" FT /mol_type="genomic DNA" FT /organism="Muscovy duck circovirus" FT /isolate="TC1/2002" FT gene 48. .926 FT /gene="rep" FT CDS 48. .926 FT /codon_start=1 FT /db_xref="UniProt/TrEMBL:Q5WRK2" FT /gene="rep" FT /product="Rep" FT /protein_id="AAR28041.1" FT /translation="MAKSGNYSYKRWVFTINNPTFEDYVHVLEFSTLDNCKFAIVGEEK FT GANGTPHLQGFLNLRSNARAAALEESLGGRAWLSRARGSDEDNEEYCSKESTYLRVGEP FT GGKGRSSQLADATSAVLAGLPLTDVARKYPTTYVIFGRGLERLRHLIVETQRDWKTEVI FT VLIGPPGTGKSRYAFEFPAENKYYKPRGKWWDGYSGNDVVVMDDFYGWVPYDDLLRITD FT RYPLRVEFKGGMTQFVAKTLITTSNKEPRDWYRSEFDLSALYRRINKYLVYNVDKYEPA FT PACSLPFPINY" FT CDS complement(136. .399) FT /codon_start=1 FT /db_xref="UniProt/TrEMBL:Q5WRK1" FT /product="ORFC2" FT /protein_id="AAR28042.1" FT /translation="MSHRRAGRIDPYRLVHQLSGMSTLWSNILRYLRQIPGHERARLFL FT PATLQGRQLSHCFGDSGIPEGEVYRSRPFPLRRLRTCNCRAC" FT CDS complement(1151. .1924) FT /codon_start=1 FT /db_xref="UniProt/TrEMBL:Q5WRK0" FT /product="ORFC1" FT /protein_id="AAR28043.1" FT /translation="MRRSTYRRAYRARRRRRGLRRRFRRRRLRIGRPRRRFSVVTFKVT FT RHTVFGFFGSGTGPTAAGRWQSLSLEDGAQYTDPPAQGNNICGLNMRWAMFGDTNSYMQ FT GGKPQYHYPYDYYIIKGVAVTLRPAYNIYQKSKTQGSTIIDKDGQIVRTSTTGWAIDPY FT GSTSSRRTWDPSRIHRRYFVPKPTIQGAGEGTKYSTFFLGGKNFTWINCSQDQVVHYGM FT GMSLRKPDNATGDEGKYDIEAQFTFYIKFGQFTGF" FT CDS 1537. .1794 FT /codon_start=1 FT /db_xref="UniProt/TrEMBL:Q5WRJ9" FT /product="ORFV2" FT /protein_id="AAR28044.1" FT /translation="MLVSGSQQPLLLCSSRKGSGTVAYPLACSYLCLQTLPISCSVHRC FT CFLVLVGLCIEPHLLDLSSAISPLPSVQFRIRKIQIRYVW" XX SQ Sequence 1988 BP; 454 A; 477 C; 492 G; 565 T; 0 other; AY394721 Length: 1988 January 5, 2005 17:21 Type: N Check: 4260 .. 1 accggcgctt gtactccgta ctccagcaat ctacggcgag ccctgcaatg 51 gctaagagtg gcaactactc ctacaaaagg tgggtcttta caattaataa 101 ccctaccttt gaagattatg ttcatgtttt agagttcagc acgctcgaca 151 attgcaagtt cgcaatcgtc ggagaggaaa agggcgcgaa cggtacacct 201 caccttcagg gattcctgaa tctccgaagc aatgcgagag ctgccgccct 251 tgaagagtcg ctgggaggaa gagcctggct ctctcgtgcc cggggatctg 301 acgaagataa cgaagaatat tgctccaaag agtcgacata cctgagagtt 351 ggtgaaccag gcggtaaggg tcgatcctcc cagctcgccg atgcgacatc 401 cgctgtgctc gctggtctcc cgctgactga cgttgcccgg aagtatccga 451 cgacttatgt tatctttggg cgtggcctcg aacgtcttcg tcacctgatc 501 gttgaaacgc aacgtgattg gaagacagaa gtcatcgtct tgattggtcc 551 gccagggacc ggaaagagcc gttatgcgtt tgaatttccc gccgaaaaca 601 agtattacaa accacgcggg aagtggtggg acggttactc gggaaatgac 651 gtagtcgtca tggacgactt ttatggttgg gtaccttacg atgatctgct 701 tcggatcact gaccgttatc cgttacgtgt tgagtttaaa ggtggcatga 751 cccagtttgt tgctaagacg ttgatcacaa ctagcaacaa agagccccgt 801 gattggtata gaagtgagtt cgatctgtcc gccttatatc ggcgcattaa 851 taagtatctt gtctataatg ttgacaagta tgaacctgcc cccgcttgtt 901 ccctcccctt tccaataaac tactgagaca aagttgtcgt tttatgtctt 951 tattaaggtg aacactcgaa agggatatac acttgggcag ctggttatgg 1001 tgaacacttg aaagggatat acacttgggc agctggttat ggtgaacact 1051 cgaaagggat atacacttgg gcagctggtt atggtgaaca ctcgaaaggg 1101 atatacactt gggcagctgg gttaaggtta ggacaggacc acgtttatgc 1151 ctagaacccg gtgaactgac caaacttgat gtaaaacgta aattgagctt 1201 ctatatcata tttcccctcg tcgccggtcg cattatctgg ttttctgagg 1251 ctcatgccca tgccgtaatg tactacttgg tcttgactgc aatttatcca 1301 ggtgaagttt ttacctccta ggaaaaatgt agaatacttg gtgccttctc 1351 ctgccccttg aattgttggt ttcggtacga agtaccgtct gtggattctc 1401 gatgggtccc atgtcctcct gctgcttgtt gatccgtatg ggtcaatggc 1451 ccatcctgta gttgatgtcc tcacgatttg cccgtccttg tcaatgatcg 1501 ttgagccttg tgttttgctt ttttggtaaa tgttgtatgc tggtctcagg 1551 gtcacagcaa ccccttttat tatgtagtag tcgtaagggt agtggtactg 1601 tggcttaccc ccttgcatgt agctatttgt gtctccaaac attgcccatc 1651 tcatgttcag tccacagatg ttgtttcctt gtgctggtgg gtctgtgtat 1701 tgagccccat cttctagact taagctctgc catctccccg ctgccgtcgg 1751 tccagttccg gatccgaaaa atccaaatac ggtatgtctg gtgactttga 1801 acgtcactac tgaaaatctt cgtcttggtc gtccgatacg tagccttcgt 1851 cttctgaatc tcctacgtag accccgcctc ctcctcctag cacgatatgc 1901 acgccgatag gtgctgcgtc gcatctgcag tgtgggcagt gacttcctgt 1951 aatgtataaa aagaccgcac aagcgccgtt atattatt