Sequence of DPV Sweet potato virus C

Sweet potato feathery mottle virus isolate 51/9S polyprotein gene, partial cds.

ACC No: AY459591

Dated: 2005-04-16 | Length: 1789 | CRC: 382490824

                !!NA_SEQUENCE 1.0
ID   AY459591   standard; genomic RNA; VRL; 1789 BP.
XX
AC   AY459591;
XX
SV   AY459591.1
XX
DT   01-DEC-2004 (Rel. 82, Created)
DT   16-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Sweet potato feathery mottle virus isolate 51/9S polyprotein gene, partial
DE   cds.
XX
KW   .
XX
OS   Sweet potato feathery mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1789
RA   Ateka E.M., Barg E., Njeru R.W., Vetten H.J.;
RT   "Biological serological and molecular variability of Sweet potato feathery
RT   mottle potyvirus";
RL   Unpublished.
XX
RN   [2]
RP   1-1789
RA   Ateka E.M., Barg E., Njeru R.W., Vetten H.J.;
RT   ;
RL   Submitted (06-NOV-2003) to the EMBL/GenBank/DDBJ databases.
RL   Institute for Plant Virology, Microbiology and Biosafety, Federal
RL   Biological Research Center for Agriculture and Forestry, Messeweg 11/12,
RL   Braunschweig 38104, Germany
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1789
FT                   /country="Kenya:Kakamega"
FT                   /db_xref="taxon:12844"
FT                   /mol_type="genomic RNA"
FT                   /note="acronym: SPFMV"
FT                   /organism="Sweet potato feathery mottle virus"
FT                   /strain="C"
FT                   /isolate="51/9S"
FT   CDS             <1. .1567
FT                   /codon_start=2
FT                   /db_xref="GOA:Q5QIY7"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProt/TrEMBL:Q5QIY7"
FT                   /product="polyprotein"
FT                   /protein_id="AAS38437.1"
FT                   /translation="STVVDNTLMVVLAVYYTLLKLGVSEFEIGERCVFFANGDDLLIAM
FT                   RPDTAHLLDDFGECLAELGLNYDFSSRTTKKEDLWFMSHCGLKRDGIYIPKLEPERIVS
FT                   ILEWDRSHEPIHRLEAICAAMVEAWGYDELLHQIRKFYAWVLGQAPYSELARTGKAPYI
FT                   AETALRSLYTGVQPSADDLSEYTRVLNEMYDDSLLQDNDLSVYHQSNNPTEFKDAGANP
FT                   PAPKPKGPYAAPEITEVTEPEDPKQAALREARQKQPAVTPEPYGRDTGEKSMRSVSPRR
FT                   VKDKDVNVGTTGTFVVPRIKLHTSKMRQPRTNGISVLNLQHLATYEPEQHNIGNTRSTQ
FT                   EQFQAWYEGVKGDYGVDDAGMAILLNGLMVWCIENGTSPNINGVWTMMDGDEQVTYPIK
FT                   PLLDHAVPTFRQIMTHFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLARYAFDFYEL
FT                   HSTTPTRAKEAHMQMKAAALKNAHNRLFGLDGNVSTQEEDAERHTATDVTRNIHNLLGM
FT                   RGVH"
FT   mat_peptide     626. .1564
FT                   /product="coat protein"
XX
SQ   Sequence 1789 BP; 540 A; 361 C; 418 G; 470 T; 0 other;

 AY459591  Length: 1789  April 19, 2005 08:49  Type: N  Check: 9428  ..

       1  atcaaccgtc gtagacaata cactaatggt tgtgttagcc gtctactaca
      51  cgttgttgaa gttgggtgtt tccgaatttg aaattggtga gcggtgtgta
     101  ttctttgcaa atggggatga tctactgata gctatgagac cagatacagc
     151  tcatcttttg gatgacttcg gtgagtgcct tgctgaactt gggcttaact
     201  atgacttctc atcaaggaca actaagaaag aggacttatg gttcatgtct
     251  cattgtggac tcaaacgaga tggaatatac attcccaaac tcgagcctga
     301  acgaatagta tctattcttg agtgggatag atcacatgag cctatacaca
     351  gacttgaagc aatttgcgct gcaatggtgg aagcgtgggg ctatgacgaa
     401  cttctacacc aaattagaaa attctatgca tgggtcttag gacaagcacc
     451  atacagtgag ttagcacgaa ctggaaaggc tccatatatt gctgaaactg
     501  cacttagatc actgtatact ggagtacaac ctagcgctga cgatcttagc
     551  gagtacacac gtgtccttaa cgagatgtat gatgatagcc tccttcaaga
     601  caatgattta tcggtgtatc atcaatctaa taaccccact gaatttaaag
     651  atgcaggtgc aaacccacca gcaccaaagc caaaaggacc atatgcagca
     701  ccagaaatca cagaggttac tgaaccagag gatcccaaac aagctgcgct
     751  tcgcgaagct agacagaaac aacctgctgt cacacctgaa ccatacggta
     801  gagacacagg tgagaaatct atgcgctctg tttcaccacg aagggttaaa
     851  gataaggatg tcaacgttgg cacaacaggc acatttgtgg tgccacgaat
     901  taagctccat actagcaaga tgcgccaacc tagaaccaat ggaatctctg
     951  tattaaactt acaacacctt gcaacttacg aacctgagca acataacatt
    1001  gggaatacac gctcaactca ggaacagttt caagcatggt atgaaggtgt
    1051  taagggtgat tatggtgttg atgacgctgg tatggcaatc ttgttgaacg
    1101  gattgatggt atggtgcata gagaatggca catccccaaa tataaatggc
    1151  gtttggacaa tgatggatgg ggatgaacaa gtgacgtacc ccataaagcc
    1201  attactggat catgcagtgc ctacttttag gcaaatcatg acacacttca
    1251  gtgacgttgc tgaagcgtat atagagatga gaaatcgtac caaggcatat
    1301  atgcctaggt atggattaca acgtaatttg actgatatga gtcttgcgcg
    1351  atatgcattt gatttctatg agctgcactc aacaacacct acacgtgcta
    1401  aagaagcaca catgcagatg aaagcggctg cacttaagaa tgcacataat
    1451  cggttgtttg gtttggatgg caacgtctcc acgcaagaag aggatgcgga
    1501  gaggcacact gcgactgatg ttactagaaa tatacataac ctcttaggaa
    1551  tgaggggtgt gcattaggtg aaactttgca ctgtgtttgt ttacttatgt
    1601  atttctagta tgcctttatc ttaaattcgt gtccttcagt cccgacagag
    1651  atggttaggt gtatcgacag agtgggcttt tagcctggtc catacacttg
    1701  agaagtttct ggtctattac gtatcataag ggactcttaa aagtgaggag
    1751  tacctcgtaa gaaaagcctt tttggttcgt gatcgagcc