Sequence of DPV Sweet potato virus 2

Sweet potato virus Y isolate M521 polyprotein gene, partial cds.

ACC No: AY459605

Dated: 2007-03-11 | Length: 1839 | CRC: -1312928066

                
ID   AY459605; SV 1; linear; genomic RNA; STD; VRL; 1839 BP.
XX
AC   AY459605;
XX
DT   01-DEC-2004 (Rel. 82, Created)
DT   11-MAR-2007 (Rel. 91, Last updated, Version 3)
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DE   Sweet potato virus Y isolate M521 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Sweet potato virus Y
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus; unclassified Potyvirus.
XX
RN   [1]
RP   1-1839
RX   PUBMED; 17136503.
RA   Ateka E.M., Barg E., Njeru R.W., Thompson G., Vetten H.J.;
RT   "Biological and molecular variability among geographically diverse isolates
RT   of sweet potato virus 2";
RL   Arch. Virol. 152(3):479-488(2007).
XX
RN   [2]
RP   1-1839
RA   Ateka E.M., Barg E., Njeru R.W., Thompson G., Vetten H.J.;
RT   ;
RL   Submitted (06-NOV-2003) to the EMBL/GenBank/DDBJ databases.
RL   Institute for Plant Virology, Microbiology and Biosafety, Federal
RL   Biological Research Center for Agriculture and Forestry, Messeweg 11/12,
RL   Braunschweig 38104, Germany
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1839
FT                   /organism="Sweet potato virus Y"
FT                   /isolate="M521"
FT                   /mol_type="genomic RNA"
FT                   /country="South Africa"
FT                   /db_xref="taxon:225962"
FT   CDS             <1. .1626
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q5QIX3"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q5QIX3"
FT                   /protein_id="AAS37685.1"
FT                   /translation="PSTVVDNTLVVVLAMTYALCKLDIKPEVHDQVCVYFANGDDLLLA
FT                   IAPSYEWILDSLEKLFKELGLNYDFSSRTNNKEELWFMSHKGMRRDGIFIPKLEPERVV
FT                   SILEWDRASEPVHRLEAICAAMVEAWGYDDLLQHIRKFYAWVLDQAPYCELARTGKAPY
FT                   IAETALKALYTCVEPSAEDLSEYARVLNLMYDDAIETNNCEPVYHQSGTEETKDAGTPT
FT                   PARSVRTKPGQTQPLKAPEGSTEPTDPPPPTVEEIIEEETPAQKALREARGKQPATQPP
FT                   YTYGRDTGPRSPRQITTTSGIRDRDVNAGTVGTFTVPRLQITSSEKRLPIVDGRPVINL
FT                   DHLAVYDPEQTNLANTRSTQEQFKAWYEGVKGDYGVSDAEMGILLNGLMVWCIENGTSP
FT                   NINGMWVMMDGEEQVTYPIKPLLDHAVPTFRQIMTHFSDIAEAYIEKRNRIKAYMPRYG
FT                   LQRNLTDMSLARYAFDFYELHSNTPVRAREAHMQMKAAALKNAQNRLFGLDGNVSTQEE
FT                   DTERHTTTDVTRNIHNLLGMRGVQ"
FT   mat_peptide     <1. .627
FT                   /product="NIb protein"
FT                   /inference="non-experimental evidence, no additional
FT                   details recorded"
FT   mat_peptide     628. .1623
FT                   /product="coat protein"
FT                   /inference="non-experimental evidence, no additional
FT                   details recorded"
FT   3'UTR           1627. .1839
XX
SQ   Sequence 1839 BP; 612 A; 359 C; 425 G; 443 T; 0 other;

ay459605 Length: 1839  11-MAR-2007  Type: N  Check: 636  ..

       1  ccctcaacag tagtggataa tacgcttgtg gtggttctag caatgacata
      51  tgcactttgc aaattggaca taaagccgga agttcatgac caagtatgtg
     101  tttattttgc gaatggcgat gatctattgc tagctatcgc accatcatat
     151  gagtggatac ttgattcatt agaaaaattg tttaaggaac ttggtttgaa
     201  ctatgatttc tcatctagaa ccaacaacaa agaggaacta tggttcatgt
     251  cccataaagg gatgagaaga gatggtattt ttataccaaa gctagaaccg
     301  gaaagggtcg tctccattct tgaatgggac agagcgagtg aaccagtcca
     351  tagactggaa gctatatgcg cagcaatggt cgaagcatgg ggttacgatg
     401  acctactcca gcatattagg aagttctacg catgggtttt ggatcaggca
     451  ccgtattgtg aactggctag aacgggcaaa gcaccatata tagctgaaac
     501  agcattaaag gctctgtaca catgtgtgga gccatcagct gaggacttat
     551  ctgagtatgc ccgagtttta aatctcatgt atgacgatgc catagagaca
     601  aataattgtg aaccagtcta ccatcagtca ggcactgaag aaacaaaaga
     651  cgctggaacc ccaacaccag caagatcagt cagaacaaaa ccaggacaaa
     701  ctcaaccgct taaagcacca gaagggagca cggaaccaac agatccacca
     751  cctccaacag ttgaagagat aattgaagaa gaaacaccag cgcaaaaagc
     801  attgagggaa gcccgtggca agcaaccagc aacacaaccc ccatacactt
     851  atgggcgaga cacaggacca cgtagcccaa ggcaaatcac aacaacaagt
     901  gggattaggg atagagatgt taatgctgga acagtaggga cgtttacagt
     951  tccaagactt caaattacat caagcgagaa aagattgcca atagttgacg
    1001  gacgtccagt aatcaacctg gatcacttgg cagtttatga tccagagcaa
    1051  acaaatcttg caaataccag atcaacacaa gaacagttta aggcatggta
    1101  tgaaggtgtg aagggtgatt atggggtatc agatgctgaa atgggcatac
    1151  tccttaatgg cctcatggtt tggtgtattg agaatggtac atcaccgaat
    1201  attaatggaa tgtgggtgat gatggacgga gaagaacaag taacttatcc
    1251  aataaaacct ctattggatc atgctgtccc cacatttaga cagataatga
    1301  cacacttcag cgacatagct gaagcgtaca ttgaaaagag aaacaggata
    1351  aaggcctata tgccaaggta tggcctacag aggaatttga ctgatatgag
    1401  tcttgcgcgg tatgcatttg atttctatga actccactca aacacaccag
    1451  taagagcaag ggaagcacat atgcaaatga aagcagcagc tttaaagaat
    1501  gcacagaacc gcctgtttgg tttggatgga aacgtctcca cgcaagaaga
    1551  agacacggag aggcatacaa caactgatgt tacaagaaat atacataacc
    1601  tgttaggaat gagaggtgtg cagtaaacaa tatattgctc gtacttttaa
    1651  tttcagttgg tctttaattt aaattcgtgt ctttcagtcc cgaagagtgt
    1701  tggttgtgtg tagtaactat gtgtggttgt accaccgttg ctacatataa
    1751  gaaaacctct ttctattacg tatcataagg gactcttaaa agtgagtctt
    1801  tgactcgtaa gaaaagcctt tttggttcgt gatcgagcc