Sequence of DPV Sweet potato feathery mottle virus

Sweet potato feathery mottle virus isolate Rakai6e polyprotein gene, partial cds.

ACC No: AY523537

Dated: 2005-04-16 | Length: 1794 | CRC: 1240358959

                !!NA_SEQUENCE 1.0
ID   AY523537   standard; genomic RNA; VRL; 1794 BP.
XX
AC   AY523537;
XX
SV   AY523537.1
XX
DT   31-JAN-2005 (Rel. 82, Created)
DT   16-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Sweet potato feathery mottle virus isolate Rakai6e polyprotein gene,
DE   partial cds.
XX
KW   .
XX
OS   Sweet potato feathery mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1794
RA   Ateka E.M., Barg E., Njeru R.W., Vetten H.J.;
RT   "Biological serological and molecular variability of Sweet potato feathery
RT   mottle potyvirus isolates";
RL   Unpublished.
XX
RN   [2]
RP   1-1794
RA   Ateka E.M., Barg E., Njeru R.W., Vetten H.J.;
RT   ;
RL   Submitted (10-JAN-2004) to the EMBL/GenBank/DDBJ databases.
RL   Institute for Plant Virology, Microbiology and Biosafety, Federal
RL   Biological Research Center for Agriculture and Forestry, Messeweg 11/12,
RL   Braunschweig 38104, Germany
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1794
FT                   /country="Uganda"
FT                   /db_xref="taxon:12844"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Sweet potato feathery mottle virus"
FT                   /strain="EA"
FT                   /isolate="Rakai6e"
FT   CDS             <1. .1573
FT                   /codon_start=2
FT                   /db_xref="GOA:Q5GIV4"
FT                   /db_xref="UniProt/TrEMBL:Q5GIV4"
FT                   /product="polyprotein"
FT                   /protein_id="AAS99559.1"
FT                   /translation="STVVDNTLMVVLAVHYTLLKLGIQESEFDKCCVFFANGDDLLLAM
FT                   RPDTAHLLDKFGECFSELGLNYDFSSRTNKKEDLWFMSHCGVKRDGIFIPRLEPERIVS
FT                   ILEWDRSHEPIHRLEAICAAMVESWGYDELLHHIRKFYAWVLDQAPYNELARNGKAPYI
FT                   AETALKALYTGVQPNASELSAYTRVLKEMYDDSMLQENDLEVYHQSNESTEFKDAGANP
FT                   PAPKPKNNPPPPTITEITDPEDPKQAALKAARAQQPAVIPESYGRDTSKERESIVGTSS
FT                   KGVRDKDVNVGTVGTFVVPRVKMNANKKRQPMVNGRAIINFQHLSAYEPEQFEVANTRS
FT                   TQEQFQAWYEGVKGDYGVDDTGMGILLNGLMVWCIENGTSPNINGVWTMMDGDEQVTYP
FT                   IKPLLDHAVPTFRQIMTHFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLARYAFDFY
FT                   EPHSTAPARAKEAHLQMKAAALKNARNRLFGLDGNVSTQEEDTERHTTTDVTRNIHNLL
FT                   GMRGVQ"
FT   mat_peptide     <1. .625
FT                   /product="NIb protein"
FT   mat_peptide     626. .1570
FT                   /product="coat protein"
XX
SQ   Sequence 1794 BP; 559 A; 335 C; 425 G; 475 T; 0 other;

 AY523537  Length: 1794  April 19, 2005 08:49  Type: N  Check: 7767  ..

       1  atccactgtg gttgataata cacttatggt tgtgttggca gttcactaca
      51  cactgctgaa actaggaatc caagaaagtg agtttgataa atgctgtgtc
     101  tttttcgcaa atggtgatga tttattgttg gcaatgaggc cagatacagc
     151  ccatttactg gataaatttg gtgaatgttt ttctgaatta ggacttaatt
     201  atgacttttc atcacgaaca aataagaaag aagatctatg gtttatgtca
     251  cactgtggcg tgaagcgtga tggaatattc attccgaggt tggagcctga
     301  aaggatcgtt tcaattcttg aatgggatcg ctcacacgag ccaattcatc
     351  gactggaagc aatatgcgct gcgatggtgg aatcatgggg ttatgatgaa
     401  ctccttcatc atattaggaa attctatgca tgggttttgg accaagcccc
     451  atacaatgaa ctagcacgaa atgggaaagc accatacata gctgaaactg
     501  cactcaaagc actctatact ggtgttcaac ctaatgcttc tgaattgagt
     551  gcgtatacga gagtgcttaa agagatgtat gatgacagta tgctccaaga
     601  gaatgattta gaagtatatc atcaatctaa tgagagcact gagtttaaag
     651  atgcaggagc gaaccctcca gcccctaaac ctaagaacaa ccctccacca
     701  cccacaataa ctgaaattac cgatccagag gacccaaagc aggcagcttt
     751  gaaagctgca cgagcacagc aacccgcagt cattccagaa tcatatggac
     801  gagacacaag caaagaaagg gagtcaatag tgggaacatc atcaaagggt
     851  gtgagggata aagatgtaaa tgttggcact gttggtacat ttgttgtgcc
     901  acgtgttaag atgaatgcaa acaagaaaag gcaaccaatg gtcaatggaa
     951  gggccattat aaatttccag cacttgtcag cgtatgaacc agagcagttt
    1001  gaggttgcaa acacccggtc aactcaagaa cagttccaag catggtatga
    1051  aggagttaaa ggggattatg gtgttgacga cacaggaatg gggatcttgt
    1101  tgaatggact aatggtttgg tgcattgaaa atggcacatc cccaaatata
    1151  aatggtgtgt ggacaatgat ggatggtgat gagcaagtga catatccaat
    1201  taaaccatta ctggaccatg cagtgcctac ttttaggcag attatgacgc
    1251  acttcagtga cgttgctgaa gcttacatag agatgcgaaa ccgtacaaag
    1301  gcgtacatgc caagatatgg tctacaacgt aatttgactg atatgagtct
    1351  tgcgcgttat gcatttgatt tttacgagcc gcattcaact gcacctgcac
    1401  gtgctaaaga agcacattta cagatgaagg cggccgcact taagaatgcg
    1451  cgaaatcggt tgtttggttt ggacggaaac gtctccacgc aagaagaaga
    1501  tacggagagg cacacgacaa ctgatgttac tagaaatata cataacctct
    1551  taggaatgag gggtgtgcaa taggacatcc tctgcactgt agcttatact
    1601  tatgttatct ttagtatgcc tttaatttaa attcgtgtct ttcagtcccg
    1651  aaggagatgg ttgaatgcat aacatggtgg gattatatct cggttattgc
    1701  atttgagaag tcacctttct attacgtatc ataagggact cttaaaagta
    1751  aggagtacct cgtaagaaaa gcctttttgg ttcgtgatcg agcc