Sequence of DPV Sweet potato feathery mottle virus

Sweet potato feathery mottle virus isolate 115/1s polyprotein gene, partial cds.

ACC No: AY523540

Dated: 2005-04-16 | Length: 1794 | CRC: 80486168

                !!NA_SEQUENCE 1.0
ID   AY523540   standard; genomic RNA; VRL; 1794 BP.
XX
AC   AY523540;
XX
SV   AY523540.1
XX
DT   31-JAN-2005 (Rel. 82, Created)
DT   16-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Sweet potato feathery mottle virus isolate 115/1s polyprotein gene, partial
DE   cds.
XX
KW   .
XX
OS   Sweet potato feathery mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1794
RA   Ateka E.M., Barg E., Njeru R.W., Vetten H.J.;
RT   "Biological serological and molecular variability of Sweet potato feathery
RT   mottle potyvirus isolates";
RL   Unpublished.
XX
RN   [2]
RP   1-1794
RA   Ateka E.M., Barg E., Njeru R.W., Vetten H.J.;
RT   ;
RL   Submitted (10-JAN-2004) to the EMBL/GenBank/DDBJ databases.
RL   Institute for Plant Virology, Microbiology and Biosafety, Federal
RL   Biological Research Center for Agriculture and Forestry, Messeweg 11/12,
RL   Braunschweig 38104, Germany
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1794
FT                   /country="Kenya"
FT                   /db_xref="taxon:12844"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Sweet potato feathery mottle virus"
FT                   /strain="O"
FT                   /isolate="115/1s"
FT   CDS             <1. .1573
FT                   /codon_start=2
FT                   /db_xref="GOA:Q5GIV1"
FT                   /db_xref="UniProt/TrEMBL:Q5GIV1"
FT                   /product="polyprotein"
FT                   /protein_id="AAS99562.1"
FT                   /translation="STVVDNTLMVVLAVHYTLLKLGIQESEFDKCCVFFANGDDLLLAM
FT                   RPDTAHLLDAFSECFSELGLNYDFSSRTNKKEDLWFMSHCGVKRDGMFIPKLEPERIVS
FT                   ILEWDRSHEPIHRLEAICAAMVESWGYDELLHHIRKFYAWVLDQAPYNELARSGRAPYI
FT                   AETALKALYTGIQPSISELSVYTRVLNEMYDDSMLQENDLEVYHQSSEKTEFKDAGVNP
FT                   PAPKSNINPPPPTITEVVDPEDPKQAALKAARAKQPATIPESYGRDTSKEKESIVGASS
FT                   KGVRDKDVNVGTVGTFVVPRVKMNANKKRQPMVNGRAIINFQHLSTYEPEQYEVANTRS
FT                   TQEQFQAWYEGVKGDYGVDDTGMGILLNGLMVWCIENGTSPNINGVWTMMDGDEQVTYP
FT                   IKPLLDHAVPTFRQIMTHFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLARYAFDFY
FT                   ELHSTTPARAKEAHLQMKAAALKNARNRLFGLDGNVSTQEEDTERHTTTDVTRNIHNLL
FT                   GMRGVQ"
FT   mat_peptide     <1. .625
FT                   /product="NIb protein"
FT   mat_peptide     626. .1570
FT                   /product="coat protein"
XX
SQ   Sequence 1794 BP; 549 A; 339 C; 429 G; 477 T; 0 other;

 AY523540  Length: 1794  April 19, 2005 08:49  Type: N  Check: 6578  ..

       1  gtccactgta gttgataaca cacttatggt tgtattagca gtacactaca
      51  cactgctaaa actaggcatc caggaaagtg agtttgataa atgctgtgtc
     101  tttttcgcga atggtgacga tttattgttg gcaatgaggc cagatacagc
     151  tcatttactg gacgcattta gtgagtgctt ttctgagttg ggactcaatt
     201  atgacttttc atcgcgaaca aataagaagg aggatttatg gttcatgtcg
     251  cactgtggag tgaaacgcga tggaatgttc attccgaagt tggagcctga
     301  aaggatagtc tccattcttg agtgggatcg ttcacacgag cctattcatc
     351  gactggaagc aatatgtgcc gcaatggtgg agtcatgggg ttatgatgaa
     401  cttcttcatc atattagaaa attttacgca tgggtcttag accaagcccc
     451  atacaatgaa ttagcacgaa gtgggagggc accatacata gccgaaactg
     501  cactcaaagc actctacact ggtattcaac ctagtatttc tgaactgagt
     551  gtgtatacaa gagtgcttaa tgaaatgtat gatgatagta tgcttcaaga
     601  gaatgatttg gaagtgtatc atcaatctag tgagaaaact gaatttaaag
     651  atgctggagt gaaccctcca gcccctaagt ccaatatcaa tcctccacca
     701  cctacaataa ctgaggtcgt tgacccggag gacccgaagc aagcagcttt
     751  aaaagctgca cgagcaaagc agcccgcaac cattccagaa tcatatgggc
     801  gtgacacgag caaagaaaag gaatcaatag tgggagcatc ctcaaagggt
     851  gtgagagata aggatgttaa tgttggcaca gttggcacat ttgttgtacc
     901  acgtgttaag atgaatgcaa ataagaagag acaaccaatg gtcaatggaa
     951  gggctattat aaatttccaa cacttgtcaa catatgaacc agagcagtat
    1001  gaagttgcga acacccgttc gacccaagag caattccaag catggtatga
    1051  gggagttaaa ggagattatg gtgttgacga cacaggaatg gggatcttac
    1101  tgaacggact aatggtttgg tgcattgaaa atggcacatc cccaaacata
    1151  aatggtgtgt ggacaatgat ggatggtgat gagcaagtga catatccaat
    1201  taaaccatta ttggatcatg cagtgcctac ttttaggcag attatgacgc
    1251  acttcagtga cgttgctgaa gcctatatag aaatgcgaaa ccgtacaaag
    1301  gcgtacatgc caaggtatgg tctacaacgt aatttgactg atatgagtct
    1351  tgcgcgatat gcatttgatt tttacgagct gcactcaact acacctgcac
    1401  gtgctaaaga agcacattta cagatgaagg cagccgcact taagaatgcg
    1451  cgaaatcggt tgtttggttt ggacggaaac gtctccacgc aagaagaaga
    1501  tacggagagg cacacgacaa ctgatgttac tagaaatata cataacctct
    1551  taggaatgag gggtgtgcaa taggacatcc tctgcactgt agcttatgct
    1601  tatgttatct ttagtatgcc tttaatttaa attcgtgtct ttcagtcccg
    1651  aaggagatgg tcgaatgcat aacatggtgg gattctatct cggttattgc
    1701  atttgagaag tccccttttt attacgtatc ataagggact cttaaaagtg
    1751  aggagtacct cgtaagaaaa gcctttttgg ttcgtgatcg agcc