Sequence of DPV Sweet potato feathery mottle virus

Sweet potato feathery mottle virus isolate Zambia polyprotein gene, partial cds.

ACC No: AY523551

Dated: 2005-04-16 | Length: 1794 | CRC: 146092581

                !!NA_SEQUENCE 1.0
ID   AY523551   standard; genomic RNA; VRL; 1794 BP.
XX
AC   AY523551;
XX
SV   AY523551.1
XX
DT   31-JAN-2005 (Rel. 82, Created)
DT   16-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Sweet potato feathery mottle virus isolate Zambia polyprotein gene, partial
DE   cds.
XX
KW   .
XX
OS   Sweet potato feathery mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1794
RA   Ateka E.M., Barg E., Njeru R.W., Vetten H.J.;
RT   "Biological serological and molecular variability of Sweet potato feathery
RT   mottle potyvirus isolates";
RL   Unpublished.
XX
RN   [2]
RP   1-1794
RA   Ateka E.M., Barg E., Njeru R.W., Vetten H.J.;
RT   ;
RL   Submitted (10-JAN-2004) to the EMBL/GenBank/DDBJ databases.
RL   Institute for Plant Virology, Microbiology and Biosafety, Federal
RL   Biological Research Center for Agriculture and Forestry, Messeweg 11/12,
RL   Braunschweig 38104, Germany
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1794
FT                   /country="Zambia"
FT                   /db_xref="taxon:12844"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Sweet potato feathery mottle virus"
FT                   /strain="RC"
FT                   /isolate="Zambia"
FT   CDS             <1. .1630
FT                   /codon_start=2
FT                   /db_xref="GOA:Q5GIU0"
FT                   /db_xref="UniProt/TrEMBL:Q5GIU0"
FT                   /product="polyprotein"
FT                   /protein_id="AAS99576.1"
FT                   /translation="STVVDNTLMVVLAVHYTLLKLGIQESEFDKCCVFFANGDDLLLAM
FT                   RPDTAHLLDKFGECFSELGLNYDFSSRTSKKEDLWFMSHRGVKRDGIFIPKLEPERIVS
FT                   ILEWDRSHEPIHRLEAICAAMVESWGYDELLHHIRKFYAWVLDQAPYNELARNGKAPYI
FT                   AETALKALYTGVQPNASELSAYTRVLKETYDDSMLQENDLEVYHQSDEKTEFKDAGADP
FT                   PAPRPKNIPPPPTTTEITDPEDPKQAALKAARAKQPAVIPESYGRDTSKERESIVGTSS
FT                   KVVRDKDVNVGTVGTFVVPRVKMNANKKRQPMVNGRAIINFQHLSTYEPEQSEVANTRS
FT                   TQEQFQAWYEGVKGDYGVDDTGMGILLNGLMVWCIENGTSPNINGVWTMMDGDEQVTCP
FT                   IKPLLDHAVPTFRQIMTHFSNVAGAYIEMRNRTKAYMPRYGLQRNSTGMSLARYAFDFY
FT                   ELHSTTPARAKEAHLQMKAPALKNAKNRLFGLDGSISTQEEDTERHTTTDVTRNIHTLL
FT                   GMRGVQQDILCTVVYTYVIFSMPLI"
FT   mat_peptide     <1. .625
FT                   /product="NIb protein"
FT   mat_peptide     626. .1627
FT                   /product="coat protein"
XX
SQ   Sequence 1794 BP; 559 A; 343 C; 425 G; 467 T; 0 other;

 AY523551  Length: 1794  April 19, 2005 08:49  Type: N  Check: 5609  ..

       1  atccactgtg gttgataata cactcatggt tgtgttagca gttcactaca
      51  cactgctgaa gctaggaatc caagaaagcg agtttgataa atgctgtgtc
     101  tttttcgcaa atggtgatga tttattgttg gcaatgaggc cagatacagc
     151  acatttactg gataagtttg gtgaatgttt ttctgaatta ggactcaatt
     201  atgacttttc atcacgaaca agtaagaaag aagatctatg gtttatgtca
     251  caccgtggcg taaaacgtga tggaatattt attccgaagt tagaacctga
     301  aaggattgtt tcaattcttg aatgggatcg ttcacacgag ccaattcatc
     351  gactggaagc aatatgtgcc gcgatggtgg aatcatgggg gtatgatgaa
     401  cttcttcatc atattaggaa attctatgca tgggttttgg accaagcccc
     451  atacaacgaa ctagcacgaa atgggaaagc accatacata gctgaaactg
     501  cactcaaagc actctatact ggtgttcaac ctaatgcttc tgaactgagt
     551  gcgtatacga gagtgctcaa agaaacgtat gatgacagta tgctccaaga
     601  gaatgatttg gaagtatatc atcaatccga tgagaaaact gaatttaaag
     651  atgcaggagc ggaccctcca gcccctagac ctaagaacat tcctccacca
     701  cccacgacaa ctgaaatcac tgatccagag gacccgaagc aggcagcttt
     751  gaaagctgca cgagcaaagc aacccgcagt cattccagaa tcatatggac
     801  gagacacaag caaagaaagg gagtcaatag tggggacatc atcaaaggtt
     851  gtgagggata aagatgtgaa tgttggcacc gttggtacat ttgttgtgcc
     901  acgtgtcaag atgaatgcaa acaagaaaag gcaaccaatg gtcaatggaa
     951  gggccattat aaatttccag cacttgtcaa catatgaacc agagcagtct
    1001  gaggttgcaa acacccggtc aactcaagaa cagttccaag catggtatga
    1051  aggagttaaa ggggattatg gtgttgacga tacaggaatg gggatcttat
    1101  tgaatggact aatggtttgg tgcattgaaa atggcacatc cccaaatata
    1151  aatggcgtgt ggacaatgat ggatggtgat gagcaagtga catgcccaat
    1201  taaaccattg ctggaccatg cagtgcctac ttttaggcag attatgacgc
    1251  acttcagtaa cgttgctgga gcttacatag agatgcgaaa ccgtacaaag
    1301  gcatacatgc caaggtatgg tctacaacgt aattcgactg gtatgagtct
    1351  tgcgcgatat gcatttgatt tctatgagct gcattcaacc acccctgcac
    1401  gtgctaaaga agcccatttg caaatgaagg cacccgcact taagaatgcg
    1451  aaaaatcggt tgtttggttt ggatggaagc atctccacgc aagaagaaga
    1501  tacggagagg cacacgacaa ctgatgttac tagaaatata cataccctct
    1551  taggaatgag gggtgtgcaa caggacatcc tctgcactgt agtttatact
    1601  tatgttatct ttagtatgcc tttaatttaa attcgtgtct ttcagtcccg
    1651  aaggagatgg ttgagtgcat aacatggtgg gattatatct cggttattgc
    1701  atttgagaag tcgcctttct attacgtatc ataagggatt cttaaaagtg
    1751  aggaatacct cgtaagaaaa gcctttttgg ttcgtgatcg agcc