Sequence of DPV Tomato chlorotic spot virus
Tomato chlorotic spot virus segment M glycoprotein precursor (GP) gene, complete cds.
ACC No: AY574054
Dated: 2006-06-29 | Length: 3822 | CRC: -831872031
ID AY574054; SV 2; linear; genomic RNA; STD; VRL; 3822 BP.
XX
AC AY574054;
XX
DT 06-SEP-2004 (Rel. 81, Created)
DT 29-JUN-2006 (Rel. 88, Last updated, Version 3)
XX
DE Tomato chlorotic spot virus segment M glycoprotein precursor (GP) gene,
DE complete cds.
XX
KW .
XX
OS Tomato chlorotic spot virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
XX
RN [1]
RP 1-3822
RX DOI; 10.1007/s11262-004-7435-y.
RX PUBMED; 15550772.
RA Lovato F.A., Nagata T., de Oliveira Resende R., de Avila A.C.,
RA Inoue-Nagata A.K.;
RT "Sequence analysis of the glycoproteins of Tomato chlorotic spot virus and
RT Groundnut ringspot virus and comparison with other tospoviruses";
RL Virus Genes 29(3):321-328(2004).
XX
RN [2]
RP 1-3822
RA Lovato F.A., Nagata T., Resende R.O., de Avila A.C., Inoue-Nagata A.K.;
RT ;
RL Submitted (16-MAR-2004) to the EMBL/GenBank/DDBJ databases.
RL Laboratory of Virology, Embrapa CNPH, Km 09 BR060 Rod. Brasilia Anapolis,
RL Brasilia, DF 70359-970, Brazil
XX
RN [3]
RC Sequence update by submitter
RP 1-3822
RA Lovato F.A., Nagata T., Resende R.O., de Avila A.C., Inoue-Nagata A.K.;
RT ;
RL Submitted (28-JUN-2006) to the EMBL/GenBank/DDBJ databases.
RL Laboratory of Virology, Embrapa CNPH, Km 09 BR060 Rod. Brasilia Anapolis,
RL Brasilia, DF 70359-970, Brazil
XX
CC On Jun 28, 2006 this sequence version replaced gi:51848023.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3822
FT /organism="Tomato chlorotic spot virus"
FT /segment="M"
FT /mol_type="genomic RNA"
FT /country="Brazil"
FT /db_xref="taxon:12851"
FT 3'UTR complement(1. .333)
FT gene complement(334. .3738)
FT /gene="GP"
FT CDS complement(334. .3738)
FT /codon_start=1
FT /gene="GP"
FT /product="glycoprotein precursor"
FT /db_xref="UniProtKB/TrEMBL:Q672G6"
FT /protein_id="AAU10599.2"
FT /translation="MRLIKLLELMIKLSLFAIALSSVLLSILLFRATDAKVEIIRGDHL
FT EIYDDSSENEVSTTSLMLRRTVPEVLPNGNFKAHSDKSRTERAEKQAPILQDETSSEKA
FT VSIQEVPNNCLNASLKCEIKGVSTYNVYYQVESNGVIYSCVSDSADNLGRCDNSQNLPK
FT KFPEIPVIPITKLDNKRHFSVGTKFFITENLASGNYPVSYNLHQTEGIVSLQTVKLSGD
FT CKITKSNFANPYTVSITSPEKIMGYIIKRPGEDGEHKVMAFSGSVSITFSEEMLDGNHN
FT LLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVNK
FT TTKPLFLWYDLIGLITYPLLLILNYLWKYFPFKCANCGNLCIVTHECTKKCICNKSKAS
FT REHFSECPILSKEPDHEYNKYKWTSMEWFHLIINTKLSLSLLKFITEILIGLIILSQMP
FT MSMAQTAQCLNGCFYVPGCNQMVTSKFEKCPEANQCFCSVRKEKIVESIFGTNIVIEGP
FT NDCIANQDCLESSPMDTFIKCRLGCEYLELFRNKPLFNSFLDYTGSSLGLTSASLYMTK
FT RLRNGIIDSYNVTDKISGIVAGDSLKQNETSIPENILPRQSLIFDSIVEGKYRYMIEQS
FT LLGGGGTVFMLNDKTSGAAKKFTIYIRSTGIHYEVSEKYTTAPIMSTHTDYYSTCTGNC
FT DTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNVYDMDKSYRIYSVLK
FT STIIADVCISGILGDQCTKITEEVPYENSVFQADIQADLHNDGITVGELIAHGPDSHIY
FT AGNIANLNDPVKMFGHPQLSHDGVPIFTKKTLSGEDMSWDCAAIGKKSVTIKSCGYDTY
FT RFKSGLEQISDIPVTFKDLSSFFLEKTFSLGKLKMVIDLPSDLFKVAPKKPSITSTRLE
FT CNGCLLCGKGLSCNFEFFSDLVFSTSISMESCSLSSYQLAVKKGSNKYNITMYCSVNPD
FT KKKIKMYPEGNPELSVEVPINTVVVKDPENIIDQNDEYAHEEQQYNSDSSAWGFWDYIK
FT SPFNFVASYFGSFFDTIRVILLIAFIFLVIYLCSMLVSMCRGYVKNGSYKIRSKIEDDD
FT DLEIKEPMMVRDTMTRRRPPMDFSHLV"
FT 5'UTR complement(3739. .3822)
XX
SQ Sequence 3822 BP; 1177 A; 710 C; 664 G; 1271 T; 0 other;
ay574054 Length: 3822 29-JUN-2006 Type: N Check: 4418 ..
1 tgatcctaat agataattaa aagtatttta ttctgaacgt agcaagttca
51 caagtatcta taaaaatcaa tttcgaagtc aagtataatt acaattaaac
101 aaaaaatcca aaaaaatctg agaaccaaaa atcaaaaatc caaaaaatct
151 gaaaaccagg aaacaaaaca aaaaacaaaa acaaataagg ctgaaaagcc
201 aaatttggcc cgaaggctct tttttggttt ttcagatata tacatatata
251 tatatgcatc tatatattca ttttattagt ttttatttta ttttatgtag
301 tttttgatca gcaattaatt tgaacatgca attttaaact agatgagaga
351 agtccatagg tggtcttctt ctcgtcattg tgtctctaac catcataggt
401 tccttaattt ctagatcatc atcatcttca atcttagatc gaattttata
451 agaaccattt ttaacatatc ctcgacacat ggaaaccagc atagaacata
501 aatagattac caggaagata aaggctataa gcagtataac tctgatagtg
551 tcgaagaaag atccgaaata actggcaaca aaattgaaag gactcttgat
601 ataatcccaa aaaccccatg cagaagaatc tgaattatac tgttgttctt
651 cgtgagcgta ctcatcattc tgatctatga tgttttcagg atctttaact
701 actactgtgt taattgggac ttccacagaa agttctggat ttccttctgg
751 atacattttg atcttcttct tatctggatt aaccgagcaa tacattgtta
801 tgttatattt atttgatcct ttcttcacag ctaattgata gctggataga
851 gagcaagatt ccatagagat tgaggtagaa aacaccaagt ctgaaaagaa
901 ctcaaaattg caagacaagc ctttcccaca caaaagacag ccattgcatt
951 ctaatctagt tgaagttata gatggcttct ttggagctac tttaaagaga
1001 tcagaaggaa gatctattac cattttcagt ttccctaagc tgaatgtttt
1051 ctctaaaaag aagctggaaa gatctttgaa ggtaacagga atatctgata
1101 tctgttccaa tccagatttg aacctatatg tatcataacc acaagatttt
1151 atggtgactg acttcttacc tattgctgca caatcccaag acatatcttc
1201 ccctgaaagg gttttcttag tgaagatagg tacaccatca tgacttaact
1251 gtggatgccc aaacattttc acaggatcat ttaagttggc aatgttccct
1301 gcatatatgt gactatcagg tccatgagct attagttcac ctacagttat
1351 tccatcattg tgcaaatctg cctgtatatc ggcttggaaa acagagtttt
1401 cgtaaggtac ttcttcagtg attttggtac attgatctcc taaaatgcca
1451 gaaatgcaca catcggctat tatagtggat tttaagacag aatagatcct
1501 gtaggattta tccatgtcat aaacatttct gcaaaagcca caagttgctc
1551 cttcgttaat ggcaaagcac catgcttcct cacagcccca gtaagatgtt
1601 ggtgtaatgc aaaagtcttg gaaaccggtc aaagcttgat tttttctaca
1651 tgtatcacaa ttgccagtgc aagtcgagta ataatctgtg tgagtgctca
1701 tgataggagc tgttgtgtac ttttcagaaa cttcgtaatg aattcctgtg
1751 ctccttatgt aaattgtaaa cttctttgct gctccagagg ttttatcatt
1801 caacatgaac acagttccgc ctcctccaag tagagattgt tctatcatgt
1851 atctgtattt accttctaca atggaatcaa agattaatga ttggcgaggt
1901 aatatattct caggtatact tgtctcattt tgcttcagag agtctccagc
1951 tactattcct gaaattttat ctgtcacatt atatgagtct attatgccat
2001 ttctcaatct ttttgtcatg tataagcttg cagaggttag ccctaaagag
2051 cttcctgtgt aatccaaaaa actattgaat aagggtttat tccgaaatag
2101 ctccaaatat tcacaaccta atctgcactt tatgaaagtg tccatagggc
2151 tgctttccag gcaatcttga ttagctatac aatcattagg tccttcaatt
2201 acaatgttag tcccgaaaat gctttctact attttctcct tcctaacact
2251 gcagaagcat tgatttgctt ctgggcactt ttcaaacttg ctagtaacca
2301 tttgattaca ccctggaaca taaaaacagc cgtttagaca ttgagctgtt
2351 tgagccattg acataggcat ttgagacaat ataatcaacc ctatgagaat
2401 ttctgtgata aatttgagta agctcaggct aagttttgtg tttattatca
2451 gatgaaacca ttccatgcta gtccatttgt atttgttata ttcgtgatct
2501 ggttcctttg aaagtatagg gcattctgaa aaatgctctc ttgaagcttt
2551 gcttttgttg caaatgcatt tttttgtgca ttcatgtgta acaatgcata
2601 agttgccaca gttggcacac ttgaacggaa aatatttcca cagataattt
2651 aaaatcaata gcaaagggta agtgatcaag cctataagat cataccacaa
2701 aaacagaggc ttggtggtct tattcaccaa ccagcgtatg gggaaatata
2751 tcaacaaggc gatcaaaatt agacgtatcc aagagaaatt gatgcaagcc
2801 gtttgtttgt agatgctttt agaatactta attatgcaat ctctgactct
2851 tttgtttgtt ttaggaattt ttgctgattt atcaccgcac aagagattgt
2901 gattgccatc taacatttcc tcactaaacg ttatactgac tgatccagaa
2951 aaagccatga ctttgtgctc tccgtcttct cccggtctct tgatgatata
3001 tcccataatt ttctctgggc tagtaatgct cacggtgtac ggattggcaa
3051 aattagattt agttatcttg caatcaccag agagcttaac agtctgcaat
3101 gaaacaatac cttctgtttg atgtagatta taggaaaccg ggtaattgcc
3151 agaggctagg ttctcagtga taaagaactt tgttccaaca gaaaaatgcc
3201 ttttgttgtc taatttagtt atagggatca caggaatttc tggaaatttc
3251 ttcggtagat tctgggaatt gtcacatcgc cccagattat ctgcagaatc
3301 tgaaacacaa gaataaataa caccattact ttcaacttga tagtacacat
3351 tgtaagttga tactcctttg atttcacatt ttagggatgc attcaggcaa
3401 ttgttaggga cttcttgtat agatacagct ttttctgagc tagtttcatc
3451 ttgaagaata ggagcctgct tctcagctcg ttctgttctg gatttatcag
3501 agtgtgcttt gaagtttcca ttgggaagaa cctctgggac tgttctgcgc
3551 aacatcaaag aagttgtaga tacctcattc tcagaagaat catcataaat
3601 ttctaggtga tctccccgaa ttatttccac ttttgcatca gtagccctga
3651 acaacagaat gctcagtaaa actgagctta gtgctattgc aaaaagactc
3701 agttttatca ttaattctag tagttttatt agtctcattc taaacgtttg
3751 cctggattgt gatggttgtc tgtttaattg tactatgtcc gggttaagat
3801 ttttgtttgc actgattgct ct