Sequence of DPV Cardamom mosaic virus

Indian cardamom mosaic virus isolate Margodu polyprotein gene, partial cds.

ACC No: AY609385

Dated: 2004-05-16 | Length: 1800 | CRC: -1207069935

                !!NA_SEQUENCE 1.0
ID   AY609385   standard; genomic RNA; VRL; 1800 BP.
XX
AC   AY609385;
XX
SV   AY609385.1
XX
DT   15-MAY-2004 (Rel. 79, Created)
DT   16-MAY-2004 (Rel. 79, Last updated, Version 2)
XX
DE   Indian cardamom mosaic virus isolate Margodu polyprotein gene, partial cds.
XX
KW   .
XX
OS   Indian cardamom mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Macluravirus; Maclura mosaic virus.
XX
RN   [1]
RP   1-1800
RA   Smitha R., Krishna Reddy M.;
RT   "Genetic diversity of Indian cardamom mosaic virus";
RL   Unpublished.
XX
RN   [2]
RP   1-1800
RA   Smitha R., Krishna Reddy M.;
RT   ;
RL   Submitted (28-APR-2004) to the EMBL/GenBank/DDBJ databases.
RL   Division of Plant Pathology, Indian Institute of Horticultural Research,
RL   Hessaraghatta Lake PO, Bangalore, Karnataka 560089, India
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1800
FT                   /country="India:Margodu, Kodagu, Karnataka"
FT                   /db_xref="taxon:152006"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Indian cardamom mosaic virus"
FT                   /isolate="Margodu"
FT                   /isolation_source="infected cardamom leaves"
FT   CDS             <1. .1587
FT                   /codon_start=1
FT                   /note="consists of NIb protein (RNA dependent RNA
FT                   polymerase) and coat protein"
FT                   /product="polyprotein"
FT                   /protein_id="AAT10385.1"
FT                   /translation="GNNSGQPSTVVDNTLILMMSFYYAYIMKTQDFDCEHIHERMRFVC
FT                   NGDDNKFSLAPSFVKEFGGEFTTEIKQLGLTYEFDDLTDDITENPYMSLTMVRTSSGIG
FT                   FSLHPSRVVAIVQWIKKGDIIQATQAAFAAMIEAYNDPWLFSILHLYLVWLLIEYKDAL
FT                   NFARVNGIFGVVYFDPCQVHALHYGTPTVNEFGECESDSCIDDDDFEAIEYCSQQFQMD
FT                   LVGTPTAPRQGNTTVPSTSSGTTGVTPPGGSGTRAAPLAPMTGQTSVVSPPRPVEEPDT
FT                   QLQESTLGGGDDDADIQWRIPPTPRRLSHFNNPRVKGKRIWNRKIINSIAKEQFTQSSQ
FT                   LATTLQFEKWAEDVRKSLGTPNEEDFQIYLTSWCLWCANNGTSSEVDVNQNMEIHSGGK
FT                   YSTIPIAIFVEPAVQNGGLRKIMRHLSDITSQILAKGGKMTAWGTKGGYTQIAMIPYAF
FT                   DFCVQTNGMPETVREQLNQGKAAAIGSGYQRVMLLDGKVQRSKTSYERHVDTDVDEFEH
FT                   GSMSEPRATLY"
FT   3'UTR           1588. .1800
FT   polyA_signal    1796. .1800
XX
SQ   Sequence 1800 BP; 543 A; 359 C; 424 G; 474 T; 0 other;

  AY609385  Length: 1800  June 1, 2004 10:13  Type: N  Check: 6478  ..

       1  ggcaacaata gtggtcaacc aagtacagta gttgacaaca ccttaatttt
      51  gatgatgtct ttttattatg cttacatcat gaagacacaa gatttcgact
     101  gtgagcacat acatgaacgg atgagattcg tctgtaatgg agacgacaac
     151  aaattctcac tggccccaag cttcgttaag gaatttgggg gagagttcac
     201  aactgaaatt aagcaacttg gtctgacgta tgaattcgat gatcttactg
     251  atgatataac ggagaatcca tacatgagtt tgacaatggt gcggacgtcg
     301  agtggtattg gtttttctct gcatccatct agggtcgttg caattgttca
     351  gtggattaag aagggagata ttatccaagc aacacaagca gcatttgcag
     401  caatgattga ggcatataat gatccatggc ttttcagtat tttgcatctt
     451  tacctagtgt ggttgctcat tgagtataaa gatgctttga actttgcgag
     501  ggtcaatggc atctttggag tcgtttactt tgatccatgc caagttcatg
     551  cgctacacta tggtactcca acagtcaatg aatttgggga atgtgagagc
     601  gacagttgca ttgacgacga cgactttgag gctatcgaat attgttctca
     651  gcagtttcaa atggatttag taggcacgcc aacagcacca agacaaggca
     701  acacaacagt gccatcaact tcatctggca cgactggtgt caccccacct
     751  ggtggtagtg gaacacgcgc agcaccgctt gcaccaatga caggacagac
     801  aagtgttgtc agtccaccac gaccagtaga agaacctgac actcaattgc
     851  aagaatcaac acttggtggt ggcgatgatg acgcagacat tcaatggagg
     901  atacccccaa caccgagaag gctgagccac tttaacaacc cacgagtcaa
     951  aggaaagaga atctggaata ggaaaattat caacagcatt gcaaaagagc
    1001  aattcacaca atcatcacag ttggcaacca ccttgcaatt tgaaaagtgg
    1051  gctgaggatg ttcggaaaag tctcggtaca cccaatgaag aagattttca
    1101  aatttatctc acatcatggt gtttatggtg tgccaataat ggcacatcat
    1151  cagaggttga tgtcaaccag aacatggaga ttcattcagg tgggaagtac
    1201  tcgacaatac caattgccat ctttgttgag ccagcagtgc aaaatggtgg
    1251  gcttcggaaa attatgagac acctcagcga cataacatca caaatactgg
    1301  ccaaaggtgg aaaaatgaca gcatggggaa cgaagggggg ttacacgcag
    1351  attgcaatga taccttatgc ttttgatttt tgtgttcaaa caaatgggat
    1401  gcccgaaaca gttcgtgagc agctaaatca agggaaggct gctgcaattg
    1451  gttcaggcta ccagcgagtc atgcttctgg atgggaaggt gcagcgaagc
    1501  aaaacaagtt acgaacggca cgttgacact gatgtcgacg aatttgaaca
    1551  cggctctatg agtgagccac gagcaactct atattgaaca tacattgatg
    1601  tcaatttagt gtgttttaaa gtttatttct agataaatgt ttaataatta
    1651  tcacttgcta catctatagg ttcaatggga gtttttgtgg gttttcttcc
    1701  aacgcctagt aaccctcaat gtagcgctta aggctgctct ggatgagcgc
    1751  ctggctgcac gtttgtgcag tttatcctgt taccatagaa ggtttaaaaa