Sequence of DPV Barley yellow dwarf virus-GAV
Barley yellow dwarf virus - GAV isolate 38W, complete genome.
ACC No: AY610954
Dated: 2006-01-11 | Length: 5673 | CRC: 1944396836
ID AY610954 standard; genomic RNA; VRL; 5673 BP.
XX
AC AY610954;
XX
SV AY610954.1
XX
DT 09-NOV-2004 (Rel. 81, Created)
DT 11-JAN-2006 (Rel. 86, Last updated, Version 2)
XX
DE Barley yellow dwarf virus - GAV isolate 38W, complete genome.
XX
KW .
XX
OS Barley yellow dwarf virus - GAV
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
XX
RN [1]
RP 1-5673
RA Du Z., Wang D.;
RT "Three newly sequenced barley yellow dwarf virus-GAV isolates: potential
RT evolutionary recombinants of luteovirus PAV and MAV";
RL Unpublished.
XX
RN [2]
RP 1-5673
RA Du Z., Wang D., Jin Z., Wang X., Zhou G.;
RT "Sequence variations among barley yellow dwarf virus-GAV isolates in the
RT variable 3' regions";
RL Unpublished.
XX
RN [3]
RP 1-5673
RA Du Z., Wang D., Jin Z., Wang X., Zhou G.;
RT ;
RL Submitted (28-APR-2004) to the EMBL/GenBank/DDBJ databases.
RL Chinese Academy of Sciences, Institute of Genetics and Developmental
RL Biology, Datun Road No.5, Beijing, Beijing 100101, P.R.China
XX
FH Key Location/Qualifiers
FH
FT source 1. .5673
FT /country="China"
FT /db_xref="taxon:224578"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Barley yellow dwarf virus - GAV"
FT /isolate="38W"
FT CDS join(143. .1159,1159. .2745)
FT /codon_start=1
FT /db_xref="GOA:Q5UUX2"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="UniProtKB/TrEMBL:Q5UUX2"
FT /note="produced by low-frequency -1 frameshift"
FT /product="RNA-dependent RNA polymerase fusion protein"
FT /ribosomal_slippage
FT /protein_id="AAV52261.1"
FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA
FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKSGVTEAWNDF
FT FLKSRGGVYAPLSCEPTKQELEVKSEKLERLLDEQHQFEVRAAKKYIKEKGRGFINCWN
FT DLRSRLRLVKDVKDEAKDNAKAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLTKEVVKE
FT VNGEETKRLEPILEEVRSIKDIAEARDAASTWITETVKLKNSTLNADELSLATIARYVE
FT NVGDKFKLDIASKTYLKQCATMSVPIPTTKDIKMKMVLQSPEARARRERMDVLDSVGFL
FT EGLCTASGFESPFPILGLPEIAVTDGARLRKVSSNIRYLSQTHLGLVYKAPNASLHNAL
FT VAVERRVFTVGKGNEPIYPPRPEHDIFTDTMDYFGKSIIDEVGYCKTYPAQLLANSYSA
FT GKRAMYHKAIASLKTTPYQQRDANVQAFLKKEKHWMTKDIAPRLICPRSKRYNIILGTR
FT LKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQKFACPVAIGVDASRFDQHVS
FT EQALKWEHGIYNGIFGDSELALALEHQISNNIKMFVEDKMLRFKVRGHRMSGDINTSMG
FT NKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITDRANEKLFDGMYDHFLQYGFNMVTEK
FT PVYELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLSMLNQSDVKSYMSAVAQCGL
FT VLNAGVPILESFYKCLYRSSGYKKVSDEFIKNVISYGTDERLQGRRTFEDTPITNHSRM
FT SYWESFGVDPKIQQIVERYYDNLTVSAQLQSVKVTTPHLQSILLSIPENHSQNDY"
FT CDS 143. .1162
FT /codon_start=1
FT /db_xref="GOA:Q5UUW9"
FT /db_xref="UniProtKB/TrEMBL:Q5UUW9"
FT /note="gp2; ORF1"
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="AAV52262.1"
FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA
FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKSGVTEAWNDF
FT FLKSRGGVYAPLSCEPTKQELEVKSEKLERLLDEQHQFEVRAAKKYIKEKGRGFINCWN
FT DLRSRLRLVKDVKDEAKDNAKAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLTKEVVKE
FT VNGEETKRLEPILEEVRSIKDIAEARDAASTWITETVKLKNSTLNADELSLATIARYVE
FT NVGDKFKLDIASKTYLKQCATMSVPIPTTKDIKMKMVLQSPEARARRERMDVLDSVGF"
FT CDS 2859. .4823
FT /codon_start=1
FT /db_xref="GOA:Q5UUW8"
FT /db_xref="InterPro:IPR000893"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:Q5UUW8"
FT /note="gp3; low abundance; produced by readthrough of stop
FT codon at end of ORF3; translated from subgenomic RNA 1"
FT /transl_except=(pos:3444. .3446,aa:OTHER)
FT /product="aphid transmission protein"
FT /protein_id="AAV52266.1"
FT /translation="MNSVGRRNNRRRNGPRRARRAGAVRRMVVVQPNRAGPKRRTRRRT
FT RGGGANLISGPAGRTEVFVFSVNDLKANSSGTIKFGPDLSQCPALSGGILKSYHRYKIT
FT NVKVEFKSHASASTVGAMFIELDTSCSQSTLGSYINSFTLSKSATKNFTAQQIDGKEFR
FT ESTVNQFYMLYKANGSTSDTAGRSLHFNMTPKXVDSSTPEPTPQPQPEPKPDPQPTPEP
FT QHKRFFEYVGTPYVIIQTRESSDSIAVKSMNDQSFQYIENETSEQRTVQAWWTSNNGVQ
FT AQAAFVFPIPAGEYSVNISCEGLQSVDHIGGNRDGYWIGLIAYQNQSGDYWGVGNYAGC
FT DITNLLGTNTWRPGHEDLELNGCKFTNGQIVERDAVISFHVKAQGADPKFYLMAPKTMK
FT SDKYNYVVSYGGYTDKRMEFGSISVTVDESDVEAQRYNRHTSTVRKTENRDYGWMSVLP
FT PYDPNQVPEQEEEQPMVDKEMDSRSPVEPPSPTSDTEAERAFDLREEELTRARLEYEAA
FT TESIPDAAPDILPSKSEMSSRPIDHDGRSLPKPQSKEVLGTYQGQNITPDDVPPVIAEK
FT LREVNRAPSTLLYDRQPKTPKSFLSRFVETNKTSLASPGSQSSTSGMTREQASEYTRIR
FT KSMGLTAAKEYKASLADTW"
FT CDS 2859. .3446
FT /codon_start=1
FT /db_xref="GOA:Q5UUX1"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:Q5UUX1"
FT /note="gp4; ORF3; translated from subgenomic RNA 1"
FT /product="coat protein"
FT /protein_id="AAV52263.1"
FT /translation="MNSVGRRNNRRRNGPRRARRAGAVRRMVVVQPNRAGPKRRTRRRT
FT RGGGANLISGPAGRTEVFVFSVNDLKANSSGTIKFGPDLSQCPALSGGILKSYHRYKIT
FT NVKVEFKSHASASTVGAMFIELDTSCSQSTLGSYINSFTLSKSATKNFTAQQIDGKEFR
FT ESTVNQFYMLYKANGSTSDTAGRSLHFNMTPK"
FT CDS 2896. .3360
FT /codon_start=1
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProtKB/TrEMBL:Q80J48"
FT /note="gp5; translated via leaky-scanning from subgenomic
FT RNA 1"
FT /product="movement protein"
FT /protein_id="AAV52264.1"
FT /translation="MAQGEQGALAQFGEWLWSNPIEPDQNEELVDAQEEEGQILYLDQQ
FT AGLRYSYSQSTTLRPTPQGQSSSVPTFRNAQRFQVEYSSPTTVTRSQTSRLSLSHTRPP
FT LQSAQCLLNSTLRAHNQPWVATLTHSPSQNQQPKTSPPNRLTGRNSGRAR"
FT CDS 4930. .5061
FT /codon_start=1
FT /db_xref="InterPro:IPR009426"
FT /db_xref="UniProtKB/TrEMBL:Q80J47"
FT /note="translated from subgenomic RNA 2"
FT /product="gp6"
FT /protein_id="AAV52265.1"
FT /translation="MDDLHVIAVCVLSTTVFAAAVLTISAIASICGSACATANIQRV"
XX
SQ Sequence 5673 BP; 1707 A; 1377 C; 1348 G; 1241 T; 0 other;
ay610954 Length: 5673 11-JAN-2006 Type: N Check: 6494 ..
1 tagtgaagat tgaccatctc acaaaagctg ttacgtgctt gtaacacact
51 acacactcgt tttgtaatcg agaagtagtt gcaagaacgg tcctctcatt
101 gcctgactag ctgagagcca tccttctatc cccaccgcca ccatgttctt
151 cgaaatactc ataggagcta gtgccaaggc ggtcaaagat ttcatcagcc
201 actgctactc tagactaaaa tctatatatt attctttcaa acgatggctg
251 atggaaatat ctgggcaatt taaggcccat gacgcctttg tcaacatgtg
301 ctttgggcac atggctgaca ttgaagactt cgaggctgaa ctcgctgaag
351 agttcgctga gagggaggat gaggtggaag aggccaggag cctcttgaaa
401 ctgctggtcg cccaaaaatc taaatccggg gtgaccgagg cttggaacga
451 cttctttttg aagtcgaggg gtggtgttta cgcaccgctc tcttgtgagc
501 ccaccaagca ggaactagag gtcaagagcg agaagctcga gaggcttcta
551 gacgaacagc accaattcga ggtgcgagcg gccaagaaat acatcaaaga
601 aaagggccgc ggcttcatca actgctggaa cgacttgcgt agccgtctca
651 gattggtgaa ggatgtcaag gatgaggcga aggacaacgc caaagccgct
701 gcaaagattg gagcggaaat gttcgccccc gttgacgtgc aggacctcta
751 cagctttaca gaggtcaaga aggtggagac cggcctcaca aaggaggtcg
801 taaaagaagt gaacggcgag gaaacgaaac gcctcgaacc catcttggaa
851 gaggtgcgat ccatcaagga cattgccgaa gctagggacg ccgcctccac
901 ttggataaca gagacagtca aattgaaaaa ttcaaccctt aacgctgatg
951 aactgtctct cgccaccatc gcccgctacg ttgaaaatgt aggggacaaa
1001 ttcaaactcg acattgccag caagacatat ctaaagcaat gcgcaacgat
1051 gtctgtacca attccaacca ccaaggacat caaaatgaag atggtgttgc
1101 agagtcctga agcacgtgcc aggcgggaac gcatggacgt gcttgactct
1151 gtgggttttt agaggggctc tgtaccgcct ctggttttga gagcccattt
1201 ccaattctcg ggctgccaga gattgcggtc acagacggag cccggctccg
1251 taaggttagt agcaatatta gataccttag ccaaacccac ttaggtttag
1301 tatataaggc accaaatgcc tccctgcaca acgcgcttgt ggcagtggag
1351 agaagagttt ttacagtagg aaaggggaac gaacctattt accccccccg
1401 ccctgagcac gacattttca ctgatacaat ggactacttt ggtaagtcca
1451 taatcgacga ggtgggatac tgtaaaacat acccagcgca actcctggct
1501 aacagctata gcgcaggaaa aagggccatg tatcacaaag ccattgcatc
1551 cctgaaaaca accccctatc agcagagaga tgctaatgtg caagctttcc
1601 tcaagaagga aaaacattgg atgaccaagg acatcgctcc ccgattgata
1651 tgcccccgca gcaagcggta caacattatc ctaggaactc gtttgaaatt
1701 caacgagaag aagatcatgc acgccatcga tagtgtgttt ggatccccca
1751 ctgtgctttc tggctatgat aacttcaagc aaggaagaat catagccaag
1801 aagtggcaaa agtttgcatg ccccgtcgct atcggcgtgg atgctagccg
1851 ctttgaccaa cacgtgtcag agcaggcgct taagtgggaa cacgggatat
1901 acaatggaat cttcggtgac agcgaattgg ctcttgcact tgaacaccaa
1951 atatccaaca acatcaaaat gttcgtagag gacaaaatgc ttaggttcaa
2001 ggttagaggc catagaatgt ccggtgacat taataccagc atgggaaaca
2051 agctaataat gtgcggcatg atgcacgcat atttcaagaa gctgggtgtt
2101 gaagcagaac tatgtaacaa tggagacgac tgtgtcatca tcacggacag
2151 agccaatgag aagctctttg atggcatgta cgaccacttt ctccagtatg
2201 gtttcaacat ggtgaccgaa aaaccagttt acgaactgga acaattggag
2251 ttttgccagt caaaaccggt ctctattaat ggaaaataca gaatggtcag
2301 aaggcccgat agcataggca aagacagcac aacactactg agcatgctca
2351 accaatccga cgtcaaaagt tacatgtcgg ctgtggctca gtgtggtttg
2401 gtgcttaacg ctggagtacc catactcgaa agtttctata aatgcctata
2451 tagaagctct gggtacaaga aagtgagtga tgaattcatc aaaaacgtca
2501 tttcgtatgg aacagatgag agactacaag gtagacgtac ctttgaagac
2551 acacctatca ctaatcatag taggatgtcc tactgggaat cattcggagt
2601 tgaccctaag atacaacaaa ttgtcgagcg gtactacgac aatcttacgg
2651 tgagtgccca actccagagc gtgaaggtga ctactccaca tctgcaatca
2701 atactacttt ccataccgga aaaccactca caaaacgact attaattacc
2751 aaattttagc tgggtttgga atagggttta tagtttctat tccctgtaca
2801 ttagctctct cctactttat ctacaataaa gtttctgaca ccactaggga
2851 ggtggtgaat gaattcagta ggccgtagaa ataaccgcag gagaaatggc
2901 ccaaggagag caaggcgcgc tggcgcagtt cggagaatgg ttgtggtcca
2951 acccaatcga gccggaccaa aacgaagaac tcgtcgacgc acaagaggag
3001 gaggggcaaa tcttatatct ggaccagcag gcaggactga ggtattcgta
3051 ttctcagtca acgaccttaa ggccaactcc tcagggacaa tcaagttcgg
3101 tcccgacctt tcgcaatgcc cagcgctttc aggtggaata ctcaagtcct
3151 accaccgtta caagatcaca aacgtcaagg ttgagtttaa gtcacacgcg
3201 tccgcctcta cagtcggcgc aatgtttatt gaactcgaca cttcgtgctc
3251 acaatcaacc ttgggtagct acattaactc attcaccctc tcaaaatcag
3301 caaccaaaaa cttcaccgcc caacagattg acgggaagga attcagggag
3351 agcacggtga atcaatttta tatgctatac aaggcaaatg gtagtacatc
3401 tgataccgcc ggccgttcac tccacttcaa catgactccc aaataggtag
3451 actcctcaac accagagcct acaccccaac cccaaccaga gcccaaacct
3501 gatccgcagc caacaccaga gcctcaacac aaacggtttt tcgagtacgt
3551 aggaacgccc tatgttatca tacaaactag ggagagttcg gatagcattg
3601 ccgtcaagtc aatgaatgat caatcctttc agtacatcga aaacgaaact
3651 tctgagcaaa gaaccgttca ggcatggtgg acctccaaca acggcgtcca
3701 agcgcaagca gcatttgtat ttcctatacc cgctggagag tatagtgtca
3751 atatttcttg tgaagggcta caatcagtgg accacattgg aggaaaccga
3801 gacggatatt ggataggctt aatagcctac caaaatcaaa gcggggatta
3851 ttggggcgtg ggcaactatg ctggctgtga tataaccaat cttctaggaa
3901 caaacacttg gcgtccaggc catgaagatt tggaattaaa cggctgcaaa
3951 ttcactaatg gacagatagt tgaaagagac gctgtgatat ccttccatgt
4001 taaagctcag ggtgctgacc ccaagtttta cctcatggca cccaagacca
4051 tgaagtctga caagtacaac tatgtcgtgt cttatggagg ttacacagac
4101 aaaagaatgg aatttggatc catatctgtc actgtggatg aatctgatgt
4151 tgaggcacag cgctacaaca ggcacactag cacggttagg aaaacagaaa
4201 accgagatta tgggtggatg agtgttctac caccctatga tcctaaccaa
4251 gtgccggagc aagaggaaga acaaccaatg gtcgacaagg agatggattc
4301 aagatctcct gtcgaacccc cttccccaac ctccgacact gaggctgaaa
4351 gagcctttga cttgagagag gaagaactta cgagggccag acttgaatac
4401 gaggcagcca ctgaatccat acctgatgct gccccggaca ttttaccctc
4451 aaaatctgaa atgagcagta gaccaataga ccatgatgga aggtctttgc
4501 caaaacctca gtcaaaagaa gtcctcggca cttaccaagg ccagaacatc
4551 acaccagatg atgttcctcc tgtcatagct gaaaaattgc gtgaagtgaa
4601 cagagcacca tctactctgc tttacgacag gcagccaaaa acaccaaaaa
4651 gctttctttc ccgtttcgta gaaaccaata aaactagctt ggcttcccct
4701 ggttcacagt cttccacgtc aggaatgaca agagaacaag cctcagaata
4751 caccaggatt aggaagtcaa tgggcctcac ggcagctaag gagtacaaag
4801 ccagtttagc tgacacatgg tgaagatcaa caccactcgc aaattcggat
4851 cctgggaaac aggcagaact tcggttcgta agctcgggta aactagtcct
4901 ttaccgtcgt atcgtacttt gtgtggccga tggatgatct acatgtgata
4951 gcagtctgtg tgctgtccac gacagtgttc gcagcggcag tactcacaat
5001 tagcgcaatt gctagtattt gcggcagtgc atgtgcaact gccaacattc
5051 aaagggttta atctgtgata caacccacca aaatacacgg ggaacaacag
5101 gttcagcgag ggggctaacg acccccagca attggctggt tctgggagac
5151 ttaaataacc tcctatagaa cgaagtggaa tccccccact gatcaaattg
5201 ggaagcatgc ttctgtgcta tacactgccc cagaggacac tgggtaaaca
5251 aatctaacca cccaactcaa tgaaatgaga gcggaggagg cggggtgggt
5301 gacctcgtga tgtgcacccg atcgtcagga ttgaagacgt taaaactcaa
5351 cgacctagtg caagtcgtta aactgactcg ggtggataca ccacacccgg
5401 cctaacttgg aggcataccc acgatacgaa acgtgggttt cttggagcca
5451 ctacctgtga tgcaaggtag ggtatgggtc ttagcaagcc ctgcgccagg
5501 aaatggacat aaaccatagc aatcccccaa gtcatctcgg caaaccacag
5551 gtgaaccgtg ccacaggcct gactaccgaa aggaaaatca gtatccaaca
5601 cagcaatgtg ttgggggtca cacccttcgg ggtactctta acgctgacac
5651 tcgaaagagc agttcggcaa ccc