Sequence of DPV Porcine circovirus-2
Porcine circovirus 2 strain JX0301, complete genome.
ACC No: AY651850
Dated: 2004-07-19 | Length: 1767 | CRC: -903425485
!!NA_SEQUENCE 1.0 ID AY651850 standard; circular genomic DNA; VRL; 1767 BP. XX AC AY651850; XX SV AY651850.1 XX DT 19-JUL-2004 (Rel. 80, Created) DT 19-JUL-2004 (Rel. 80, Last updated, Version 1) XX DE Porcine circovirus 2 strain JX0301, complete genome. XX KW . XX OS Porcine circovirus 2 OC Viruses; ssDNA viruses; Circoviridae; Circovirus. XX RN [1] RP 1-1767 RA Zhou J.Y., Chen Q.X., Ye J.X., Chen T.F., Shang S.B., Li Z.K., Shen H.G.; RT "Complete genome of JX0301 strain of PCV-2 isolated from pigs with wasting RT syndromes"; RL Unpublished. XX RN [2] RP 1-1767 RA Zhou J.Y., Chen Q.X., Ye J.X., Chen T.F., Shang S.B., Li Z.K., Shen H.G.; RT ; RL Submitted (12-JUN-2004) to the EMBL/GenBank/DDBJ databases. RL Institute of Preventive Veterinary Medicine, Zhejiang University, 268 RL Kaixuan Road, Hangzhou, Zhejiang 310029, China XX FH Key Location/Qualifiers FH FT source 1. .1767 FT /country="China:Zhejiang" FT /db_xref="taxon:85708" FT /mol_type="genomic DNA" FT /note="genotype: PCV-2" FT /virion FT /organism="Porcine circovirus 2" FT /strain="JX0301" FT /specific_host="pig" FT gene 51. .995 FT /gene="rep" FT CDS 51. .995 FT /codon_start=1 FT /db_xref="UniProt/TrEMBL:Q6DNI6" FT /gene="rep" FT /product="replicase" FT /protein_id="AAT72901.1" FT /translation="MPSKKNGRSGPQPHKRWVFTLNNPSEDERKKIRDLPISLFDYFIV FT GEEGNEEGRTPHLQGFANFVKKQTFNKVKWYLGARCHIEKAEGTDQQNKEYCSKEGNLL FT MECGAPRSQGQRSDLSTAVSTLLESGSLVTVAEQHPVTFVRNFRGLAELLKVSGKMQKR FT DWKTNVHVIVGPPGCGKSKWAANFADPETTYWKPPRNKWWDGYHGEEVVVIDDFYGWLP FT WDDLLRLCDRYPLTVETKGGTVPFLARSILITSNQTPLEWYSSTAVPAVEALYRRITSL FT VFWKNATEQSTEEGGQFVTLSPPCPEFPYEINY" FT gene complement(1033. .1734) FT /gene="cap" FT CDS complement(1033. .1734) FT /codon_start=1 FT /db_xref="UniProt/TrEMBL:Q6DNI5" FT /note="ORF2" FT /gene="cap" FT /product="cap protein" FT /protein_id="AAT72902.1" FT /translation="MTYPRRRYRRRRHRPRSHLGQILRRRPWLLHPRHRYRWRRKNGIF FT NTRLSRTFGYTIKRTTVKTPSWAVDMMRFNINDFLPPGGGSNPRSVPFEYYRIRKVKVE FT FWPCSPITQGDRGVGSSAVILDDNFVTKATALTYDPYVNYSSRHTITQPFSYHSRYFTP FT KPVLDSTIDYFRPNNKRNQLWLRLQTAGNVDHVGLGTAFENSIYDQEYNIRVTMYVQFR FT EFNLKDPPLNP" XX SQ Sequence 1767 BP; 447 A; 359 C; 503 G; 458 T; 0 other; AY651850 Length: 1767 October 20, 2004 11:42 Type: N Check: 2816 .. 1 accagcgcac ttcggcagcg gcagcacctc ggcagcacct cagcagcaac 51 atgcccagca agaagaatgg aagaagcgga ccccaacccc ataaaaggtg 101 ggtgttcact ctgaataatc cttccgaaga cgagcgcaag aaaatacggg 151 atcttccaat atccctattt gattatttta ttgttggcga ggagggtaat 201 gaggaaggac gaacacctca cctccagggg ttcgctaatt ttgtgaagaa 251 gcagactttt aataaagtga agtggtattt gggtgcccgc tgccacatcg 301 agaaagcgga aggaacagat cagcagaata aagaatactg cagtaaagaa 351 ggcaacttac tgatggagtg tggagctccg agatctcagg gacaacggag 401 tgacctgtct actgctgtga gtaccttgtt ggagagcggg agtctggtga 451 ccgttgcaga gcagcaccct gtaacgtttg tcagaaattt ccgcgggctg 501 gctgaacttt tgaaagtgag cgggaaaatg cagaagcgtg attggaagac 551 taatgtacac gtcattgtgg ggccacctgg gtgtggtaaa agcaaatggg 601 ctgctaattt tgcagacccg gaaaccacat actggaaacc acctagaaac 651 aagtggtggg atggttacca tggtgaagaa gtggttgtta ttgatgactt 701 ttatggctgg ctgccctggg atgatctact gagactgtgt gatcgatatc 751 cattgactgt agagactaaa ggtggaactg tacctttttt ggcccgcagt 801 attctgatta ccagcaatca gaccccgttg gaatggtact cctcaactgc 851 tgtcccagct gtagaagctc tttatcggag gattacttcc ttggtatttt 901 ggaagaatgc tacagaacaa tccacggagg aagggggcca gttcgtcacc 951 ctttcccccc catgccctga atttccatat gaaataaatt actgagtctt 1001 ttttatcact tcgtaatggt ttttattatt cattaagggt taagtggggg 1051 gtctttaaga ttaaattctc tgaattgtac atacatggtt acacggatat 1101 tgtattcctg gtcgtatata ctgttttcga acgcagtgcc gaggcctacg 1151 tggtctacat ttccagcagt ttgtagtctc agccacagct gatttctttt 1201 gttgtttggt cggaagtaat caatagtgga atctaggaca ggtttggggg 1251 taaagtagcg ggagtggtag gagaagggct gggttatggt atggcgggag 1301 gagtagttta cataggggtc ataggtgagg gctgtggcct ttgttacaaa 1351 gttatcatct agaataacag cactggagcc cactcccctg tcaccctggg 1401 tgatcgggga gcagggccag aattcaacct taacctttct tattctgtag 1451 tattcaaagg gcacagagcg ggggtttgag ccccctcctg ggggaagaaa 1501 gtcattaata ttgaatctca tcatgtccac cgcccaggag ggcgttttga 1551 ctgtggttcg cttgatagta tatccgaagg tgcgggagag gcgggtgttg 1601 aagatgccat ttttccttct ccagcggtaa cggtggcggg ggtggaggag 1651 ccaggggcgg cggcggagga tctggccaag atggctgcgg gggcggtgtc 1701 ttcttctccg gtaacgcctc cttggatacg tcatatctga aaacgaaaga 1751 agtgcgctgt aagtatt