Sequence of DPV Porcine circovirus-2

Porcine circovirus 2 strain JX0301, complete genome.

ACC No: AY651850

Dated: 2004-07-19 | Length: 1767 | CRC: -903425485

                !!NA_SEQUENCE 1.0
ID   AY651850   standard; circular genomic DNA; VRL; 1767 BP.
XX
AC   AY651850;
XX
SV   AY651850.1
XX
DT   19-JUL-2004 (Rel. 80, Created)
DT   19-JUL-2004 (Rel. 80, Last updated, Version 1)
XX
DE   Porcine circovirus 2 strain JX0301, complete genome.
XX
KW   .
XX
OS   Porcine circovirus 2
OC   Viruses; ssDNA viruses; Circoviridae; Circovirus.
XX
RN   [1]
RP   1-1767
RA   Zhou J.Y., Chen Q.X., Ye J.X., Chen T.F., Shang S.B., Li Z.K., Shen H.G.;
RT   "Complete genome of JX0301 strain of PCV-2 isolated from pigs with wasting
RT   syndromes";
RL   Unpublished.
XX
RN   [2]
RP   1-1767
RA   Zhou J.Y., Chen Q.X., Ye J.X., Chen T.F., Shang S.B., Li Z.K., Shen H.G.;
RT   ;
RL   Submitted (12-JUN-2004) to the EMBL/GenBank/DDBJ databases.
RL   Institute of Preventive Veterinary Medicine, Zhejiang University, 268
RL   Kaixuan Road, Hangzhou, Zhejiang 310029, China
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1767
FT                   /country="China:Zhejiang"
FT                   /db_xref="taxon:85708"
FT                   /mol_type="genomic DNA"
FT                   /note="genotype: PCV-2"
FT                   /virion
FT                   /organism="Porcine circovirus 2"
FT                   /strain="JX0301"
FT                   /specific_host="pig"
FT   gene            51. .995
FT                   /gene="rep"
FT   CDS             51. .995
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q6DNI6"
FT                   /gene="rep"
FT                   /product="replicase"
FT                   /protein_id="AAT72901.1"
FT                   /translation="MPSKKNGRSGPQPHKRWVFTLNNPSEDERKKIRDLPISLFDYFIV
FT                   GEEGNEEGRTPHLQGFANFVKKQTFNKVKWYLGARCHIEKAEGTDQQNKEYCSKEGNLL
FT                   MECGAPRSQGQRSDLSTAVSTLLESGSLVTVAEQHPVTFVRNFRGLAELLKVSGKMQKR
FT                   DWKTNVHVIVGPPGCGKSKWAANFADPETTYWKPPRNKWWDGYHGEEVVVIDDFYGWLP
FT                   WDDLLRLCDRYPLTVETKGGTVPFLARSILITSNQTPLEWYSSTAVPAVEALYRRITSL
FT                   VFWKNATEQSTEEGGQFVTLSPPCPEFPYEINY"
FT   gene            complement(1033. .1734)
FT                   /gene="cap"
FT   CDS             complement(1033. .1734)
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q6DNI5"
FT                   /note="ORF2"
FT                   /gene="cap"
FT                   /product="cap protein"
FT                   /protein_id="AAT72902.1"
FT                   /translation="MTYPRRRYRRRRHRPRSHLGQILRRRPWLLHPRHRYRWRRKNGIF
FT                   NTRLSRTFGYTIKRTTVKTPSWAVDMMRFNINDFLPPGGGSNPRSVPFEYYRIRKVKVE
FT                   FWPCSPITQGDRGVGSSAVILDDNFVTKATALTYDPYVNYSSRHTITQPFSYHSRYFTP
FT                   KPVLDSTIDYFRPNNKRNQLWLRLQTAGNVDHVGLGTAFENSIYDQEYNIRVTMYVQFR
FT                   EFNLKDPPLNP"
XX
SQ   Sequence 1767 BP; 447 A; 359 C; 503 G; 458 T; 0 other;

AY651850  Length: 1767  October 20, 2004 11:42  Type: N  Check: 2816  ..

       1  accagcgcac ttcggcagcg gcagcacctc ggcagcacct cagcagcaac
      51  atgcccagca agaagaatgg aagaagcgga ccccaacccc ataaaaggtg
     101  ggtgttcact ctgaataatc cttccgaaga cgagcgcaag aaaatacggg
     151  atcttccaat atccctattt gattatttta ttgttggcga ggagggtaat
     201  gaggaaggac gaacacctca cctccagggg ttcgctaatt ttgtgaagaa
     251  gcagactttt aataaagtga agtggtattt gggtgcccgc tgccacatcg
     301  agaaagcgga aggaacagat cagcagaata aagaatactg cagtaaagaa
     351  ggcaacttac tgatggagtg tggagctccg agatctcagg gacaacggag
     401  tgacctgtct actgctgtga gtaccttgtt ggagagcggg agtctggtga
     451  ccgttgcaga gcagcaccct gtaacgtttg tcagaaattt ccgcgggctg
     501  gctgaacttt tgaaagtgag cgggaaaatg cagaagcgtg attggaagac
     551  taatgtacac gtcattgtgg ggccacctgg gtgtggtaaa agcaaatggg
     601  ctgctaattt tgcagacccg gaaaccacat actggaaacc acctagaaac
     651  aagtggtggg atggttacca tggtgaagaa gtggttgtta ttgatgactt
     701  ttatggctgg ctgccctggg atgatctact gagactgtgt gatcgatatc
     751  cattgactgt agagactaaa ggtggaactg tacctttttt ggcccgcagt
     801  attctgatta ccagcaatca gaccccgttg gaatggtact cctcaactgc
     851  tgtcccagct gtagaagctc tttatcggag gattacttcc ttggtatttt
     901  ggaagaatgc tacagaacaa tccacggagg aagggggcca gttcgtcacc
     951  ctttcccccc catgccctga atttccatat gaaataaatt actgagtctt
    1001  ttttatcact tcgtaatggt ttttattatt cattaagggt taagtggggg
    1051  gtctttaaga ttaaattctc tgaattgtac atacatggtt acacggatat
    1101  tgtattcctg gtcgtatata ctgttttcga acgcagtgcc gaggcctacg
    1151  tggtctacat ttccagcagt ttgtagtctc agccacagct gatttctttt
    1201  gttgtttggt cggaagtaat caatagtgga atctaggaca ggtttggggg
    1251  taaagtagcg ggagtggtag gagaagggct gggttatggt atggcgggag
    1301  gagtagttta cataggggtc ataggtgagg gctgtggcct ttgttacaaa
    1351  gttatcatct agaataacag cactggagcc cactcccctg tcaccctggg
    1401  tgatcgggga gcagggccag aattcaacct taacctttct tattctgtag
    1451  tattcaaagg gcacagagcg ggggtttgag ccccctcctg ggggaagaaa
    1501  gtcattaata ttgaatctca tcatgtccac cgcccaggag ggcgttttga
    1551  ctgtggttcg cttgatagta tatccgaagg tgcgggagag gcgggtgttg
    1601  aagatgccat ttttccttct ccagcggtaa cggtggcggg ggtggaggag
    1651  ccaggggcgg cggcggagga tctggccaag atggctgcgg gggcggtgtc
    1701  ttcttctccg gtaacgcctc cttggatacg tcatatctga aaacgaaaga
    1751  agtgcgctgt aagtatt