Sequence of DPV Amur/Soochong virus

Soochong virus-1 isolate SC-1 nucleocapsid protein mRNA, complete cds.

ACC No: AY675349

Dated: 2006-01-11 | Length: 1695 | CRC: -1083514560

                
ID   AY675349   standard; mRNA; VRL; 1695 BP.
XX
AC   AY675349;
XX
SV   AY675349.1
XX
DT   28-JUL-2004 (Rel. 80, Created)
DT   11-JAN-2006 (Rel. 86, Last updated, Version 3)
XX
DE   Soochong virus-1 isolate SC-1 nucleocapsid protein mRNA, complete cds.
XX
KW   .
XX
OS   Soochong virus-1
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Hantavirus;
OC   unclassified Hantavirus.
XX
RN   [1]
RP   1-1695
RX   PUBMED; 16372283.
RA   Baek L.J., Kariwa H., Lokugamage K., Yoshimatsu K., Arikawa J.,
RA   Takashima I., Kang J.I., Moon S.S., Chung S.Y., Kim E.J., Kang H.J.,
RA   Song K.J., Klein T.A., Yanagihara R., Song J.W.;
RT   "Soochong virus: An antigenically and genetically distinct hantavirus
RT   isolated from Apodemus peninsulae in Korea";
RL   J. Med. Virol. 78(2):290-297(2006).
XX
RN   [2]
RP   1-1695
RA   Song J.-W., Moon S.-S., Baek L.J.;
RT   ;
RL   Submitted (02-JUL-2004) to the EMBL/GenBank/DDBJ databases.
RL   Microbiology, College of Medicine, Korea University, 5-ka, Anam-dong,
RL   Sungbuk-ku, Seoul 136-705, Korea
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1695
FT                   /db_xref="taxon:286541"
FT                   /mol_type="mRNA"
FT                   /organism="Soochong virus-1"
FT                   /isolate="SC-1"
FT                   /specific_host="Apodemus peninsulae"
FT                   /segment="S"
FT   CDS             36. .1325
FT                   /codon_start=1
FT                   /db_xref="GOA:Q6B7Z4"
FT                   /db_xref="InterPro:IPR002214"
FT                   /db_xref="UniProtKB/TrEMBL:Q6B7Z4"
FT                   /product="nucleocapsid protein"
FT                   /protein_id="AAT78474.1"
FT                   /translation="MATMEELQKEINAHEGQLVIARQKVRDAERQYEKDPDELNKRAST
FT                   DREGVAASIQAKIDELKRQLADRIATGKNLGKEQDPTGVEPGDHLKERSMLSYGNVLDL
FT                   NHLDIDEPTGQTADWLSIVVYLTSFVVPILLKALYMLTTRGRQTTKDNKGTRIRFKDDS
FT                   SFEDVNGIRKPKHLYVSLPNAQSSMKAEEITPGRYRTAICGLYPAQIKARQMVSPVMSV
FT                   IGFLALAKDWGDRIEQWLSEPCKLLPDTAAVSLHGGPATNRDYLRQRQAALGNMETKES
FT                   KAIRQHAETAGCSMIEDIESPSSIWVFAGAPDRCPPTCLFIAGIAELGAFFSILQDMRN
FT                   TIMASKTVGTSEEKLRKKSSFYQSYLRRTQSMGIQLDQRIIVLFMVAWGKEAVDNFHLG
FT                   DDMDPELRTLAQSLIDLKVKEISNQEPLKL"
XX
SQ   Sequence 1695 BP; 545 A; 320 C; 386 G; 444 T; 0 other;

ay675349 Length: 1695  11-JAN-2006  Type: N  Check: 9252  ..

       1  tagtagtaga ctccctaaga gctacgataa caacaatggc aactatggag
      51  gaattgcaaa aggagatcaa tgcccatgag ggtcaacttg tgatagcaag
     101  gcaaaaagta agggatgcag aaaggcaata tgagaaggat ccagatgagt
     151  tgaacaaaag agcatcaaca gacagagaag gggttgcagc atccattcag
     201  gcaaaaattg atgaattaaa gaggcagttg gcagatagaa tagcaactgg
     251  aaaaaacctg ggaaaggagc aagacccaac aggtgttgaa cccggggacc
     301  atttaaaaga gagatcaatg ctcagctatg ggaatgtact ggatttgaac
     351  catctagaca ttgatgagcc aacaggtcag actgcagact ggctgagcat
     401  tgttgtttat cttacatcct ttgtggttcc gatactcctg aaagcccttt
     451  acatgctgac aacaagggga agacagacaa ctaaggacaa taaagggaca
     501  agaatccgat tcaaagatga cagctctttt gaagatgtga atggaattcg
     551  gaagccgaaa catctctatg tgtctttacc taatgcacag tctagtatga
     601  aggcagaaga gataacacct ggaaggtaca ggacagcaat ctgtggatta
     651  taccctgctc agattaaagc cagacagatg gtaagcccag tcatgagtgt
     701  aattggattc cttgccttgg ctaaagactg gggtgatagg attgagcagt
     751  ggctaagtga accctgtaag ctcctcccag acacagcagc agtaagcctc
     801  catggtggtc ctgcaactaa tagagattat ctccggcaaa ggcaggcagc
     851  tttaggaaac atggagacta aggagtcaaa agcaatccgc caacatgcag
     901  aaacagcagg ctgtagcatg atagaagata ttgagtcacc atcatccatc
     951  tgggtgtttg ctggggcccc agaccgatgc ccaccaacat gtttattcat
    1001  tgcagggatt gcagagttag gtgccttttt ttccatctta caagatatgc
    1051  ggaatactat aatggcatct aagacagttg gtacatcaga ggaaaagttg
    1101  agaaagaagt catcatttta ccagtcttac ctcaggagaa cacaatcaat
    1151  gggaatacaa ctggaccaga gaattattgt tctctttatg gttgcttggg
    1201  ggaaggaagc agtggataat ttccatcttg gagatgacat ggatcctgaa
    1251  ttgaggacac tagcacagag tttgattgat ctaaaagtga aggaaatttc
    1301  aaaccaagaa cctttaaaac tataatcact gaatgtataa cccatattat
    1351  gtgatcattt tatactactg aatcattatc aatcatattt gcactattat
    1401  tatcagggga atcaacatat tagggtgagg atacatttat gggtgggaat
    1451  tattacttag agggtgggtc agttaacccg ttgtgggtgg gtttagttcc
    1501  aggctgcctt aagtagcttt ttttgtatat aaagatgtag atatcatttg
    1551  atccttaaac taattttgct ttctttcctt cttccttgct ttctctgctc
    1601  actaacaaca acattctacc tcaacacaaa actacctcac ttcaactacc
    1651  tcatttgctt tttccttgat tgtcttttta gggagcatac tacta