Sequence of DPV Amur/Soochong virus
Soochong virus-1 isolate SC-1 glycoprotein precusor mRNA, complete cds.
ACC No: AY675353
Dated: 2006-01-11 | Length: 3615 | CRC: -1705791108
ID AY675353 standard; mRNA; VRL; 3615 BP.
XX
AC AY675353;
XX
SV AY675353.1
XX
DT 28-JUL-2004 (Rel. 80, Created)
DT 11-JAN-2006 (Rel. 86, Last updated, Version 3)
XX
DE Soochong virus-1 isolate SC-1 glycoprotein precusor mRNA, complete cds.
XX
KW .
XX
OS Soochong virus-1
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Hantavirus;
OC unclassified Hantavirus.
XX
RN [1]
RP 1-3615
RX PUBMED; 16372283.
RA Baek L.J., Kariwa H., Lokugamage K., Yoshimatsu K., Arikawa J.,
RA Takashima I., Kang J.I., Moon S.S., Chung S.Y., Kim E.J., Kang H.J.,
RA Song K.J., Klein T.A., Yanagihara R., Song J.W.;
RT "Soochong virus: An antigenically and genetically distinct hantavirus
RT isolated from Apodemus peninsulae in Korea";
RL J. Med. Virol. 78(2):290-297(2006).
XX
RN [2]
RP 1-3615
RA Song J.-W., Moon S.-S., Baek L.J.;
RT ;
RL Submitted (02-JUL-2004) to the EMBL/GenBank/DDBJ databases.
RL Microbiology, College of Medicine, Korea University, 5-ka, Anam-dong,
RL Sungbuk-ku, Seoul 136-705, Korea
XX
FH Key Location/Qualifiers
FH
FT source 1. .3615
FT /db_xref="taxon:286541"
FT /mol_type="mRNA"
FT /organism="Soochong virus-1"
FT /isolate="SC-1"
FT /specific_host="Apodemus peninsulae"
FT /segment="M"
FT CDS 41. .3448
FT /codon_start=1
FT /db_xref="GOA:Q6B7Z0"
FT /db_xref="InterPro:IPR002532"
FT /db_xref="InterPro:IPR002534"
FT /db_xref="InterPro:IPR012316"
FT /db_xref="UniProtKB/TrEMBL:Q6B7Z0"
FT /note="G1 and G2 glycoprotein polyprotein"
FT /product="glycoprotein precusor"
FT /protein_id="AAT78478.1"
FT /translation="MGLWKWLIIAVLVWPCFALRNVYDMKIECPHTVNFGENSVVGYVE
FT LPPMPIADITQMMPESSCSMDNHQSLNTITKYTQVSWRKKADQAQSSQNSFETVASEVD
FT FKGTCVLKHKMVEDSYRSRKSIICYDLSCNSTFCKPTLYLIVPVHACNMMKSCLIALGP
FT YRVQVVYERTYCMSGVFIERKCFVPDQSVVSIIKHGIFDIASVHIVCFFVAIKGGTYKI
FT LEQVKKSFELTCNDTDNKIQGYYTCLVGGNSAPIYVPTLDDFRSMEAFAGIFKSPHGED
FT HDLAGEEIASYSIVGPATAKVPHSASTDTLTLVAFSGIPSYSSFSVLTGSADARHGFSP
FT GFFPQLNQTRCDKTALPLTWTGMIDLPGYYEAVHPCTVFCVLSGPGASCEAFSEGGIFN
FT ITSPMCLVSKQNRFRSSEQQVNFVCQRVDMDIVVYCNGQKKVILTKTLVIGQCIYTITS
FT LFSLLPGVAHSIAVELCVPGFHGWATAALLTTFCFGWVLIPAVTLVILTILKFIANIFH
FT TSNQENRLKSVLKKIKEEFEKTKGSMVCDVCKYECETYKELKAHGVSCPQSQCPYCFTH
FT CEPTEAAFQAHYQRCQVTHRFRDDLKKTVTPQNFTPGCYRTLNLFRYKSRCYIFTMWVF
FT LLILESILWAASASETPLVPIWNDNAHGVGSVPMHTDLELDFSLASSSKYTYRRRLTNP
FT LEETQSVDLHIELEEQTIGVDVHALGHWFDGRLNLKTSFHCYGACTKYEYPWHTAKCHY
FT ERDYQYETSWGCNPADCPGVGTGCTACGLYLDQLKPVGSAYKIITIKYSRRVCVQFGEE
FT NLCKVIDMNDCFVSRHVKVCIIGTVSKFSQGDTLLFFGPLEGGGLIFKHWCTSTCQFGD
FT PGDIMSPRDRGFLCPEFPGSFRKKCNFATTPVCEYDGNMVSGYKKVMATIDSFQSFNTS
FT SMHFTDERIEWKDPDGMLRDHINILVTKDIDFDNLGDNPCKVGLQTSAIEGAWGSGVGF
FT TLTCQVSLTECPTFLTSIKACDKAICYGAESITLTRGQNTVKVSGKGGHSGSTFKCCHG
FT EECSQIGLHAAAPHLDKVNGVSEMENSKVYEDGAPECGIKCWFVKSGEWISGIFNGNWI
FT VLIVLCAFLIFSLILLSLLCPVRKHKKS"
XX
SQ Sequence 3615 BP; 1074 A; 693 C; 765 G; 1083 T; 0 other;
ay675353 Length: 3615 11-JAN-2006 Type: N Check: 5403 ..
1 tagtagtaga caccgcaaga gaaagcagtc aagcagcaac atgggtttat
51 ggaagtggct aataatagcc gttttggtat ggccatgttt tgccttgagg
101 aatgtatatg acatgaaaat tgagtgcccc catacagtca acttcggaga
151 aaacagtgtg gtcgggtatg tggagctacc acctatgcca attgctgaca
201 tcacccaaat gatgccagaa agctcttgta gcatggataa ccaccagtct
251 ttgaacacaa tcacgaagta cactcaggtc agttggagaa aaaaagctga
301 ccaggcgcag tcaagccaga attcatttga aacagtagcc tctgaggtgg
351 actttaaagg aacttgtgtg ttaaaacaca aaatggtgga agactcatat
401 cgcagtcgca aatcaataat ttgctatgac ctctcatgca atagtacatt
451 ttgtaaaccc accctttacc taattgtgcc tgtacatgcc tgtaacatga
501 tgaagagctg cctgatagca ctagggccct atcgagtaca ggttgtctat
551 gagagaacat actgcatgtc aggagtcttc attgaacgaa aatgctttgt
601 gcctgatcag agtgtagtga gcatcattaa acatggtata tttgacattg
651 caagtgttca tattgtttgt ttctttgttg caatcaaagg tggcacatat
701 aagatccttg agcaggttaa gaagtcattt gagctaacat gcaatgatac
751 tgataataag atccaaggtt attatacatg ccttgtggga ggaaactcag
801 cacccatata tgttccaacc cttgatgact ttagatcaat ggaggctttt
851 gctggtatct ttaaatcccc tcatggagaa gatcatgacc ttgcagggga
901 agagattgcc tcttattcca ttgtaggacc tgccactgcg aaagtacccc
951 atagtgctag cacagacaca ctgaccttag ttgctttctc agggattcca
1001 tcctattcat cctttagtgt cctaacaggt tctgcagatg ctcgtcatgg
1051 ttttagccct ggattctttc cacaactaaa ccagacaagg tgtgataaga
1101 cagccttacc actgacttgg acaggtatga ttgatctacc tggctactat
1151 gaagcagtac atccatgcac tgttttctgt gttttgtctg gccctggagc
1201 atcttgtgaa gcattctcag aaggaggaat ctttaacatt acttctccaa
1251 tgtgcctagt ctcaaaacaa aatcgcttca gatcatcaga gcaacaagtc
1301 aactttgttt gtcaaagagt tgatatggat atcgtagttt actgtaatgg
1351 tcagaaaaaa gtgatattaa caaaaacctt agtaattggc cagtgtatat
1401 atacaataac tagcctgttt tcacttcttc ctggagttgc acattctatt
1451 gccgttgaat tgtgtgtccc tggcttccat ggctgggcca cagcagcact
1501 gcttacaaca ttctgctttg gttgggtgct aatacctgca gttacccttg
1551 tcatattaac aattctaaag tttattgcaa acattttcca cacaagcaat
1601 caggaaaaca ggttaaaatc agtcttaaag aaaattaagg aagagtttga
1651 aaagactaaa ggctctatgg tgtgtgatgt atgcaagtat gagtgtgaga
1701 catataaaga attaaaagca catggggtat catgtcctca gtctcaatgc
1751 ccatattgct ttacccattg tgaacctaca gaagctgcat ttcaagccca
1801 ttaccaaaga tgccaagtta cccatagatt tagggatgac ttaaagaaga
1851 cagtaactcc ccagaatttt accccaggct gttaccgtac cttaaatttg
1901 tttagatata aaagtaggtg ctatattttt acaatgtggg tgtttttatt
1951 aatcctagaa tccatattat gggctgctag tgcctctgaa actcctctag
2001 tccctatctg gaatgacaat gctcatgggg taggatctgt cccgatgcac
2051 acagaccttg aattagattt ctccttggct tctagctcta aatacactta
2101 ccgaagaagg cttacaaacc cacttgaaga gacacaatca gtagatctcc
2151 atattgagct tgaggaacaa actataggtg tagatgtgca tgcgttgggg
2201 cattggtttg atggccgctt aaatcttaaa acctcctttc actgctatgg
2251 tgcatgtaca aaatacgaat acccatggca tactgccaag tgtcattatg
2301 aacgagatta tcagtatgag acaagttggg gatgtaaccc agctgactgc
2351 cccggagttg gcacaggttg tactgcatgc ggcctatatc tagaccaatt
2401 aaaacctgtt ggtagcgctt ataaaatcat tacaataaaa tacagcagga
2451 gagtctgtgt tcagtttgga gaagaaaact tgtgcaaggt gattgatatg
2501 aatgactgct ttgtatcaag gcatgtcaag gtctgtataa ttggcactgt
2551 ttcaaaattt tctcaaggtg atacactatt gttttttgga ccgttagagg
2601 gtggtggctt aatatttaag cactggtgta catctacatg tcagtttggg
2651 gatcctggag atattatgag tccaagagat agaggcttcc tgtgccctga
2701 atttcctggg agttttcgga agaagtgcaa ctttgcaact accccagtat
2751 gtgagtatga tggaaacatg gtctcagggt ataagaaggt catggctaca
2801 attgactcat ttcaatcatt taatactagc tctatgcatt ttactgatga
2851 gagaatagag tggaaagatc ctgatgggat gttacgagac cacataaata
2901 tcctagttac aaaggatatt gactttgaca accttggtga caatccttgt
2951 aaagttgggt tacaaacatc agctatagag ggagcttggg gctctggtgt
3001 tggtttcaca ttgacttgtc aagtttcctt aacagagtgt cctacttttc
3051 tgacatcaat taaagcatgt gacaaagcaa tctgttatgg cgcagagagc
3101 ataacactta caagaggaca gaatactgtt aaagtctcag ggaaaggagg
3151 gcatagtgga tcaacattta agtgctgtca tggcgaagag tgctcacaaa
3201 ttggtcttca tgctgctgca cctcatcttg acaaagtcaa tggggtttca
3251 gagatggaaa acagtaaggt ttatgaagat ggagcacctg aatgtggcat
3301 aaaatgttgg tttgttaagt caggtgaatg gatttcaggg attttcaatg
3351 gtaattggat agtactcatt gtcttatgtg catttttaat attctcactt
3401 atattgctta gccttctctg tcctgttcga aagcacaaaa agtcatagtt
3451 ctaaagcact gcatttataa ttatcttatt tataattaac atttattaac
3501 tgctatactt tactacattt tatctaacac actaaaaaaa atagtagctt
3551 tttaaccaca caacttaacc ttttcttctg tatgatgtct taacatcttg
3601 cggtgtctac tacta