Sequence of DPV Pea enation mosaic virus-2

Pea enation mosaic virus-2 strain UK RNA-dependent RNA-polymerase, phloem RNA movement protein, and cell-to-cell RNA movement protein genes, complete cds.

ACC No: AY714213

Dated: 2006-01-11 | Length: 4255 | CRC: -2031273672

                
ID   AY714213   standard; genomic RNA; VRL; 4255 BP.
XX
AC   AY714213;
XX
SV   AY714213.1
XX
DT   15-SEP-2004 (Rel. 81, Created)
DT   11-JAN-2006 (Rel. 86, Last updated, Version 2)
XX
DE   Pea enation mosaic virus-2 strain UK RNA-dependent RNA-polymerase, phloem
DE   RNA movement protein, and cell-to-cell RNA movement protein genes, complete
DE   cds.
XX
KW   .
XX
OS   Pea enation mosaic virus-2
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Umbravirus.
XX
RN   [1]
RP   1-4255
RX   PUBMED; 11038393.
RA   Mayo M., Ryabov E., Fraser G., Taliansky M.;
RT   "Mechanical transmission of Potato leafroll virus";
RL   J. Gen. Virol. 81(Pt 11):2791-2795(2000).
XX
RN   [2]
RP   1-4255
RX   DOI; 10.1006/viro.2001.0982.
RX   PUBMED; 11485404.
RA   Ryabov E.V., Fraser G., Mayo M.A., Barker H., Taliansky M.;
RT   "Umbravirus gene expression helps potato leafroll virus to invade mesophyll
RT   tissues and to be transmitted mechanically between plants";
RL   Virology 286(2):363-372(2001).
XX
RN   [3]
RP   1-4255
RA   Ryabov E.V.;
RT   ;
RL   Submitted (10-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL   Warwick-HRI, University of Warwick, Wellesbourne, Warwick CV35 9EF, United
RL   Kingdom
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .4255
FT                   /country="United Kingdom"
FT                   /db_xref="taxon:193120"
FT                   /mol_type="genomic RNA"
FT                   /organism="Pea enation mosaic virus-2"
FT                   /strain="UK"
FT                   /clone="p2-11"
FT   CDS             join(21. .815,815. .2560)
FT                   /codon_start=1
FT                   /db_xref="GOA:Q64EZ0"
FT                   /db_xref="InterPro:IPR002166"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="InterPro:IPR007095"
FT                   /db_xref="UniProtKB/TrEMBL:Q64EZ0"
FT                   /product="RNA-dependent RNA-polymerase"
FT                   /ribosomal_slippage
FT                   /protein_id="AAU20330.1"
FT                   /translation="MNCVARIKRWFTPDFTPGEGVKSRAQLERELDPTWALLVCQERAR
FT                   RDADSIANEWYEGSMECNLLIPRPTTEDVFGPSIAPEPVALVEETTRSHAPCVDVPAEE
FT                   SSELAEIDPVDLAKYDSLHRRLLAEANPCREMVLWVPPGLPAERDVLPRARGVIMIPEV
FT                   PASAYTLSVKVMEAVRLAQEVLASLAKRALEKRSRPTLTAQAQPEATLSGCDYPYQETG
FT                   AAAAWITPGCIAMELRAKFGVCKRTPANLEMGSRVARELLRDNLCHLQGDHVVHQCHCC
FT                   GPVADPDRRRPSLWSASGGFLVGAVLPRLGEDTSVRFDNLHPSIEVIKAARPRPTQRMS
FT                   YQIDVVRPLGDFGVHNNSLVNLARGINERVFYTDNARTEPLKPKVPFPSSRELKTFRVT
FT                   PWTMDRVVESYTGSQRTRYANARDSILSNPLSPKDARVKTFVKAEKINFTAKPDPAPRV
FT                   IQPRDPRFNIVLAKYIKPLEPMLYKALGKLYKYPAVAKGFNAVETGEIIAGKWRCFKDP
FT                   VVVGLDASRFDQHVSVEALQFTHAVYRGFIKSREFNNLLQMMYTNRGLGSTKDGFVRYK
FT                   VKGRRMSGDMDTSLGNCVLMVLLTRNLCKVLGIPHELFNNGDDCIVFFDRCHLEKFNNA
FT                   VKPYFADLGFKMKVEPPVDVLEKIEFCQTQPIYDGEKWRTVRCISSIGKDCSSVISWDQ
FT                   LEGWWNAIAQSGLAVCGGMPIYTSFYRWLARAGKSGTKCQSHPLWKNEGLNWYRMGMDL
FT                   SHEVNVTPQARLSFFAGFGISPPMQVAIEALYDKLPPPSPHHGPPVKVVTQRVFTNYFT
FT                   PESACASMSTDEDNKSDFAVYGPVPTVMSLCAQC"
FT   CDS             2781. .3473
FT                   /codon_start=1
FT                   /db_xref="InterPro:IPR006902"
FT                   /db_xref="UniProtKB/TrEMBL:Q64EY9"
FT                   /note="ORF3; long distance RNA movement protein; RNA
FT                   binding"
FT                   /product="phloem RNA movement protein"
FT                   /protein_id="AAU20331.1"
FT                   /translation="MTIIINVNNDERKQPEGATGSSVRRGDNKRTRGNKPRSHHPGSRE
FT                   RKGYTHPSPTPKNSRQGQLRTEAVQEHPKHGGTAFRRESGSSVHPSRPRRRARRCGDMA
FT                   PRQHPPPPRERRTKTETQAERRAQALSVLPTLLDCIGGLDLGPAEVLLHCHRAVRKQLR
FT                   TGVQPIQPVSHVESTHRSSDPQLLESPTTCSANLQNDGAGRVIGGGIPTAIPEGSDVEQ
FT                   VCHASHYG"
FT   CDS             2797. .3549
FT                   /codon_start=1
FT                   /db_xref="GOA:Q64EY8"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:Q64EY8"
FT                   /note="plasmodesmal"
FT                   /product="cell-to-cell RNA movement protein"
FT                   /protein_id="AAU20332.1"
FT                   /translation="MSITTSASNQKELLAALYGEVTIKELEETNLGVITPVRANEKVTL
FT                   TPLLPPKTQGRVSSVLKRFRSTRNTGGLLSVEKVVVVFTPHVPDDVLGDVEIWLHDSIL
FT                   PHLGSVGPRLKLKLSEGPKLLAFYPPYSIALGDSISGQPRSFSIATELFESNFAPGCSP
FT                   FSLFLMWSPRIEAVTHNYLSRPPRALPICRTMVRDALSEVASQQQYLKGAMSNRYAMPL
FT                   TTGDGQHRAMKGAPSALPPTGVCTQASK"
XX
SQ   Sequence 4255 BP; 955 A; 1172 C; 1206 G; 922 T; 0 other;

ay714213 Length: 4255  11-JAN-2006  Type: N  Check: 9656  ..

       1  gggtatttat agagatcagt atgaactgtg tcgctagaat caagcggtgg
      51  ttcacacctg acttcacccc tggcgagggc gtgaagtcta gagctcagct
     101  ggaaagagag ttggatccca cctgggcgct tctcgtgtgc caagagcgag
     151  cgcgtcgtga tgctgacagt attgctaatg agtggtacga gggcagcatg
     201  gagtgcaacc tccttatccc tcggcccaca accgaggatg tatttggccc
     251  ctccatcgcc cctgagcctg tggctctagt ggaggaaact acccgttccc
     301  acgcgccgtg cgtggatgtc cctgccgagg agtccagtga gttagcggag
     351  attgatcctg ttgatctcgc caagtacgac tccctccatc gtcgcctgtt
     401  ggctgaggcc aacccttgca gggaaatggt tctgtgggtg cctcctggcc
     451  taccagcaga gcgtgacgtc ctgcccaggg cacgtggggt gataatgatc
     501  cccgaagtcc ctgcctctgc atacaccttg tccgtgaagg ttatggaggc
     551  tgtgcggttg gcacaggaag tcttggcatc ccttgccaag agggccttag
     601  agaaaaggtc cagacctacc cttaccgccc aggcccagcc agaggctacc
     651  ctgtcggggt gcgactaccc gtatcaggag actggagcag cagccgcatg
     701  gataactcct ggctgcattg ccatggagct cagagccaaa tttggcgtct
     751  gcaaacgcac ccccgcaaac ttagagatgg ggagtcgtgt cgcccgcgag
     801  ctcctgcggg ataactgtgt cacctgcagg gagaccacgt ggtacaccag
     851  tgccattgct gtggacctgt ggctgacccc gaccgtcgtc gacctagcct
     901  gtggtcggcg agcggcggat ttttggtagg ggctgtgctg cctcggctgg
     951  gggaagacac tagtgtgcgg tttgacaacc tgcaccccag catcgaggta
    1001  atcaaggcgg ctaggccccg cccaacccag aggatgtcgt accaaatcga
    1051  cgttgtgcgt cctcttggag attttggtgt gcacaacaac tcccttgtca
    1101  acctagccag gggaattaat gaaagggtgt tctacacgga caatgctagg
    1151  acagaacccc ttaagcctaa ggttcccttc ccctcatcac gggagctgaa
    1201  aaccttcagg gtcacccctt ggaccatgga tagggttgtg gagagttaca
    1251  ctgggtccca gcgcactcgc tatgccaacg cgcgggacag catattatcc
    1301  aacccactga gtcctaaaga tgcccgggtc aagacgtttg tcaaagctga
    1351  aaagataaat ttcacagcca aacctgaccc cgcccctcgt gtgatacagc
    1401  ctagggaccc acgattcaac attgtcctgg ctaaatacat caagcctttg
    1451  gagccgatgc tgtacaaagc actggggaag ctttacaagt accctgcagt
    1501  tgctaagggg tttaacgcgg ttgagacggg ggagatcatt gccggtaagt
    1551  ggcggtgttt caaagatcct gtcgtcgtgg gactagacgc ttcccgattt
    1601  gatcagcatg tgtctgttga ggcgttacag tttacccacg cggtgtacag
    1651  agggttcatc aagtcacggg agttcaacaa cctcctgcag atgatgtaca
    1701  ccaaccgtgg cctagggtct actaaggacg gattcgtccg ttacaaggtc
    1751  aaaggtagac gcatgagcgg tgacatggac acctctttgg gcaactgtgt
    1801  gctcatggtg ttgcttacca ggaatctttg caaggttcta ggcatcccgc
    1851  acgagctttt caacaatggt gatgattgca tcgtcttttt cgatcgctgc
    1901  cacttggaga agttcaacaa tgctgtcaaa ccttattttg cagacctagg
    1951  gtttaagatg aaggttgaac cgccggttga cgtgctggag aaaatagagt
    2001  tctgccaaac gcagcctata tatgacgggg agaagtggcg caccgtgcgc
    2051  tgcatctcga gtatcgggaa agattgctca tccgttatta gctgggacca
    2101  attggagggg tggtggaatg ccatcgccca gagtggtctg gctgtgtgtg
    2151  gcgggatgcc gatatacacg tcgttctacc ggtggctagc acgggccggt
    2201  aagagtggga ccaagtgcca gtcacacccc ttatggaaaa acgaggggtt
    2251  gaattggtac aggatgggaa tggacctttc tcatgaggtc aatgtcaccc
    2301  ctcaagcgcg cctgtccttt ttcgcgggtt ttggtatttc ccccccgatg
    2351  caggtcgcca ttgaggcgct gtatgacaag ctacctccac cgtcccccca
    2401  ccatggtcct ccggttaagg ttgtaacaca gcgagtgttc accaactatt
    2451  tcacgccgga aagcgcctgt gctagcatga gcacggatga agacaacaaa
    2501  tctgactttg ctgtttacgg ccctgtgcct acagtgatgt ctctttgtgc
    2551  tcagtgttag gctttaaatt ttagcgatgg cgtgacacgg tcacaccctg
    2601  aattgacagg gtacagatca agggaagccg gggagtcacc aaccccaccc
    2651  tgaatcgaca gggcaaaaag ggaagccggg caccgcccac gtggaatcga
    2701  ccacgtcacc ttttcgcgtc gactgtgtcg tcaacaccct ttcggcccgc
    2751  cagcctagga caatggcgga tgggtaatat atgacgataa tcataaatgt
    2801  caataacgac gagcgcaagc aaccagaagg agctactggc agctctgtac
    2851  ggcgaggtga caataaaaga actcgaggaa acaaacctcg gagtcatcac
    2901  cccggttcgc gcgaacgaaa aggttacact cacccctctc ctacccccaa
    2951  aaactcaagg cagggtcagc tccgtactga agcggttcag gagcacccga
    3001  aacacggggg gactgctttc cgtagagaaa gtggtagtag tgttcacccc
    3051  tcacgtccca gacgacgtgc taggagatgt ggagatatgg ctccacgaca
    3101  gcatcctccc ccacctcggg agcgtcggac caagactgaa actcaagctg
    3151  agcgaagggc ccaagctctt agcgttttac ccaccctact cgattgcatt
    3201  gggggactcg atctcgggcc agccgaggtc cttctccatt gccaccgagc
    3251  tgttcgaaag caacttcgca ccggggtgca gcccattcag cctgtttctc
    3301  atgtggagtc cacgcatcga agcagtgacc cacaattact tgagtcgccc
    3351  accacgtgct ctgccaattt gcagaacgat ggtgcgggac gcgttatcgg
    3401  aggtggcatc ccaacagcaa tacctgaagg gagcgatgtc gaacaggtat
    3451  gccatgcctc tcactacggg tgatggccag catagagcca tgaagggggc
    3501  tcccagtgcc cttccaccaa cgggggtgtg tacccaggct tctaagtgag
    3551  gcttcgcttc ccgccggaag accgcggcgg ttctgttcct cccacaggag
    3601  tacggcaaca acccaccttg ggaaagtggg gaccccagca ctaactcctt
    3651  taactaggcg ggcgtgctgg ttacagtagg aggggacagt gcgcatcaaa
    3701  actgagcccc accacaactc tcatccacag ggtggttggg acgcaggtgt
    3751  cggagggatc gccagccctc aggatagtga gctcccgcag agggataagc
    3801  tatctccctg cgacgtagtg gtagaacacg tgggataggg gatgaccttg
    3851  tcgaccggtt atcggtcccc tgctccttcg agctggcaag gcgcccaaag
    3901  gttctacact gctactaaag ttggtggtgg atgtctcgcc caaaaagatc
    3951  ataaacgcgc gggataaggt ccctttccac cttcgccggg taaggctaga
    4001  gtcagcgctg catgactata acttgcggcc gatccagttg cacgactggt
    4051  ggtccccctc agtgtcttgg ttgtctgcca agtgggcggt ggtcggattc
    4101  caccacaccc tgccacgagg tgcgtggaga cttggccagt ctaggctcgt
    4151  cgtaattagt tgcagcgacg ttaatcaacc cgtccgggca tacaatagga
    4201  ccggttgtgc ttcttcctcc ctttcttagc cagggtggtt acctccctgg
    4251  cgccc