Sequence of DPV Tomato spotted wilt virus
Tomato spotted wilt virus isolate CA-1 segment S, complete sequence.
ACC No: AY744468
Dated: 2005-01-08 | Length: 2927 | CRC: 2144239618
!!NA_SEQUENCE 1.0
ID AY744468 standard; genomic RNA; VRL; 2927 BP.
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AC AY744468;
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SV AY744468.1
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DT 11-OCT-2004 (Rel. 81, Created)
DT 08-JAN-2005 (Rel. 82, Last updated, Version 2)
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DE Tomato spotted wilt virus isolate CA-1 segment S, complete sequence.
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KW .
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OS Tomato spotted wilt virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN [1]
RP 1-2927
RA Tsompana M., Abad J., Purugganan M., Moyer J.W.;
RT "The molecular population genetics of the Tomato spotted wilt virus (TSWV)
RT genome";
RL Mol. Ecol. 14(1):53-66(2005).
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RN [2]
RP 1-2927
RA Tsompana M., Abad J., Purugganan M., Moyer J.W.;
RT ;
RL Submitted (08-SEP-2004) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, North Carolina State University, 2518 Gardner Hall,
RL Raleigh, NC 27695-7616, USA
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FH Key Location/Qualifiers
FH
FT source 1. .2927
FT /country="USA:California"
FT /db_xref="taxon:11613"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Tomato spotted wilt virus"
FT /isolate="CA-1"
FT /specific_host="aster"
FT /segment="S"
FT gene 89. .1492
FT /gene="NSs"
FT CDS 89. .1492
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q5XP65"
FT /gene="NSs"
FT /product="non-structural protein"
FT /protein_id="AAU95384.1"
FT /translation="MSSSVYESIIQTRASVWGSTASGKAVVDSYWIHELGTGSQLVQTQ
FT LYSDSRSKSSFSYTAKVGDLPCEEEEILSQHVYIPIFDDIDFSINIDDSVLALSVCSNT
FT VNANGVKHQGHLKVLSPAQLHSIGSIMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLS
FT CVKEHTYKIEMCYNQALGKVNVLSPNRNVHEWLYSFKPNFNQVESNNRTVNSLAVKSLL
FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRVPKVLKQISIQKLFKVAGDETNKTFYLSI
FT ACIPNHNSVETALNITVICKHQLPIRKCEAPFELSMMFSDLKEPYNIVHDPSYPQRIVH
FT ALLETHTSFAQVLCNNLQEDVIIYTLNNHELTPRKLDLGETTLNYGEDAYKRKYFLSKT
FT LECLPSNTQTISYLDSIQIPSWKIDFARGEIKISPQSISVAKSLLKLDLSGIKKKESKI
FT KEAYASGSK"
FT gene complement(2000. .2776)
FT /gene="Nc"
FT CDS complement(2000. .2776)
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q5XP64"
FT /gene="Nc"
FT /product="nucleocapsid protein"
FT /protein_id="AAU95385.1"
FT /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLENLDQI
FT KKMSIISCLTFLKNRQSIMKVIKQSDFTFGRITIKKTSDRIGATDMTFRRLDSLIRVRL
FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS
FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS
FT NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLTELA"
XX
SQ Sequence 2927 BP; 932 A; 553 C; 468 G; 974 T; 0 other;
AY744468 Length: 2927 January 11, 2005 08:38 Type: N Check: 8373 ..
1 agagcaattg tgtcataatt ttattcataa tcaaacctca cttagaaaat
51 cacaatactg taataagaac acagtaccaa taaccataat gtcttcaagt
101 gtttatgagt caatcattca gacaagagct tcagtctggg gatcaactgc
151 atctggtaaa gctgttgtag attcttactg gattcatgaa cttggtactg
201 gttctcaact agttcagacc cagctgtatt ctgattcaag aagcaaaagt
251 agctttagct atactgcaaa agtaggagat cttccttgtg aagaagaaga
301 gattctctct cagcatgtgt atatccccat ttttgatgat attgatttta
351 gcatcaatat tgatgactct gttctggcac tatctgtttg ctcaaataca
401 gtcaatgcta atggagtgaa acatcaaggt catttgaagg ttttgtctcc
451 tgctcagctc cactctattg gatctatcat gaacagatct gatattacag
501 accgattcca gctccaagaa aaagacataa ttcccaatga cagatacatt
551 gaagctgcaa acaaaggctc tttgtcttgt gtcaaagagc atacctataa
601 gatcgagatg tgctataatc aagctttagg caaagtgaat gttctatctc
651 ctaacagaaa tgtccatgaa tggctgtaca gtttcaagcc aaatttcaat
701 caagttgaaa gcaacaacag aactgtgaat tctcttgcag tgaaatctct
751 actcatgtca gcagaaaaca acatcatgcc caactctcaa gcttttgtca
801 aagcttccac tgattctcat ttcaagctga gcctctggct aagggttcca
851 aaggttttga agcagatttc cattcagaaa ttgttcaagg ttgcaggaga
901 tgaaacaaat aaaacatttt atttatctat tgcctgcatt ccaaaccata
951 acagtgttga gacagcttta aacattactg ttatttgcaa gcatcagctc
1001 ccaattcgta aatgtgaagc tccttttgaa ttatcaatga tgttttctga
1051 tttaaaggag ccttacaaca ttgttcatga tccttcatat ccccaaagga
1101 ttgtccatgc tctgcttgaa actcacacat cttttgcaca agttctttgc
1151 aacaacttgc aagaagatgt gatcatttac actttgaaca accatgagct
1201 aactcctaga aagttagatt taggtgaaac aaccttgaat tacggtgaag
1251 atgcctacaa aaggaaatat ttcctttcaa aaacacttga atgtcttcca
1301 tctaacacac aaactatttc ttatttagac agcatccaaa tcccctcctg
1351 gaagatagac tttgccaggg gagaaattaa aatttctccg caatctattt
1401 cagttgcaaa atctttgtta aagcttgatt taagcgggat caaaaagaaa
1451 gaatctaaga ttaaggaagc atatgcttca ggatcaaaat gatcttgctg
1501 tgtccatcgt tttctaatta tgtcatgttt atttctttct ttacttataa
1551 ttatttctct gtttgtcatt tctttcaaat ccctcctgtc tagtagaaac
1601 cataaaacaa aaataaaaaa taaaaaataa ataaaatcaa aataaaataa
1651 aaatcaaaaa atgaaataaa aacaacaaaa aaattaaaaa caaaaaacca
1701 aaaaagatcc cgaaagggac aattttggcc aaatttgggt tttgtttttg
1751 ttttttgttt tttgtttttt gtttttattt ttattttatt tatttttatt
1801 tattttattt tatttttgtt tttattttat gtttttgttg tttttgttat
1851 tttgttattt attaagcaca acacacagaa agcaaacttt aattaaacac
1901 acttattaaa atttaacaca ctaagcaagc acaagcaata aagataaaga
1951 aagctttata tatttatagg cttttttata atttaactta cagctgcttt
2001 taagcaagtt ctgtgagttt tgcctgtttt ttaaccccaa acatttcata
2051 gaacttgtta agagtttcgc tgtaatgttc catagcaata cttcctttag
2101 cattaggatt gctggagcta agtatagcag catactcttt ccccttcttc
2151 acctgatctt cattcatttc aaatgctttg cttttcagca cagtgcaaac
2201 ttttcctaag gcttccctgg tgtcatactt ctttgggtcg atcccgaggt
2251 ccttgtattt tgcatcctga tatatagcca agacaacact gatcatctca
2301 aagctatcaa ctgaagcaat aagaggtaag ctacctccta gcattatggc
2351 aagcctcaca gactttgcat catcaagagg taatccatag gcttgaatca
2401 aagggtggga agcaatctta gatttgatag tattgagatt ctcagaattc
2451 ccagtttcct caacaagcct gaccctgatc aagctatcaa gccttctgaa
2501 ggtcatgtca gtggctccaa tcctgtctga agttttcttt atggtaattc
2551 taccaaaagt aaaatcactt tgcttaataa ccttcattat gctctgacga
2601 ttcttcagga atgtcagaca tgaaataatg ctcatctttt tgatctggtc
2651 aaggttttcc agacaaaaag tcttgaagtt gaatgctacc agattctgat
2701 cttcctcaaa ctcaaggtct ttgccttgtg tcaacaaagc aacaatgctt
2751 tccttagtga gcttaacctt agacatgatg atcgtagaag ttgttatatg
2801 ctttgaccgt atgcaactca aggtgcaaaa gtgcaactct gtatcccgca
2851 gtcgtttctt agggttttaa tgtgatgatt tgtaagactg agtgttaagg
2901 tttgaataaa attgacacaa ttgctct