Sequence of DPV Tomato spotted wilt virus
Tomato spotted wilt virus isolate CA-2 segment S, complete sequence.
ACC No: AY744469
Dated: 2005-01-08 | Length: 2926 | CRC: 632727384
!!NA_SEQUENCE 1.0
ID AY744469 standard; genomic RNA; VRL; 2926 BP.
XX
AC AY744469;
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SV AY744469.1
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DT 11-OCT-2004 (Rel. 81, Created)
DT 08-JAN-2005 (Rel. 82, Last updated, Version 2)
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DE Tomato spotted wilt virus isolate CA-2 segment S, complete sequence.
XX
KW .
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OS Tomato spotted wilt virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN [1]
RP 1-2926
RA Tsompana M., Abad J., Purugganan M., Moyer J.W.;
RT "The molecular population genetics of the Tomato spotted wilt virus (TSWV)
RT genome";
RL Mol. Ecol. 14(1):53-66(2005).
XX
RN [2]
RP 1-2926
RA Tsompana M., Abad J., Purugganan M., Moyer J.W.;
RT ;
RL Submitted (08-SEP-2004) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, North Carolina State University, 2518 Gardner Hall,
RL Raleigh, NC 27695-7616, USA
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FH Key Location/Qualifiers
FH
FT source 1. .2926
FT /country="USA:California"
FT /db_xref="taxon:11613"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Tomato spotted wilt virus"
FT /isolate="CA-2"
FT /specific_host="buttercup"
FT /segment="S"
FT gene 89. .1492
FT /gene="NSs"
FT CDS 89. .1492
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q5XP65"
FT /gene="NSs"
FT /product="non-structural protein"
FT /protein_id="AAU95386.1"
FT /translation="MSSSVYESIIQTRASVWGSTASGKAVVDSYWIHELGTGSQLVQTQ
FT LYSDSRSKSSFSYTAKVGDLPCEEEEILSQHVYIPIFDDIDFSINIDDSVLALSVCSNT
FT VNANGVKHQGHLKVLSPAQLHSIGSIMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLS
FT CVKEHTYKIEMCYNQALGKVNVLSPNRNVHEWLYSFKPNFNQVESNNRTVNSLAVKSLL
FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRVPKVLKQISIQKLFKVAGDETNKTFYLSI
FT ACIPNHNSVETALNITVICKHQLPIRKCEAPFELSMMFSDLKEPYNIVHDPSYPQRIVH
FT ALLETHTSFAQVLCNNLQEDVIIYTLNNHELTPRKLDLGETTLNYGEDAYKRKYFLSKT
FT LECLPSNTQTISYLDSIQIPSWKIDFARGEIKISPQSISVAKSLLKLDLSGIKKKESKI
FT KEAYASGSK"
FT gene complement(1999. .2775)
FT /gene="Nc"
FT CDS complement(1999. .2775)
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q5XP64"
FT /gene="Nc"
FT /product="nucleocapsid protein"
FT /protein_id="AAU95387.1"
FT /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLENLDQI
FT KKMSIISCLTFLKNRQSIMKVIKQSDFTFGRITIKKTSDRIGATDMTFRRLDSLIRVRL
FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS
FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS
FT NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLTELA"
XX
SQ Sequence 2926 BP; 932 A; 552 C; 468 G; 974 T; 0 other;
AY744469 Length: 2926 January 11, 2005 08:38 Type: N Check: 7147 ..
1 agagcaattg tgtcataatt ttattcataa tcaaacctca cttagaaaat
51 cacaatactg taataagaac acagtaccaa taaccataat gtcttcaagt
101 gtttatgagt caatcattca gacaagagct tcagtctggg gatcaactgc
151 atctggtaaa gctgttgtag attcttactg gattcatgaa cttggtactg
201 gttctcaact agttcagacc cagctgtatt ctgattcaag aagcaaaagt
251 agctttagct atactgcaaa agtaggagat cttccttgtg aagaagaaga
301 gattctctct cagcatgtgt atatccccat ttttgatgat attgatttta
351 gcatcaatat tgatgactct gttctggcac tatctgtttg ctcaaataca
401 gtcaatgcta atggagtgaa acatcaaggt catttgaagg ttttgtctcc
451 tgctcagctc cactctattg gatctatcat gaacagatct gatattacag
501 accgattcca gctccaagaa aaagacataa ttcccaatga cagatacatt
551 gaagctgcaa acaaaggctc tttgtcttgt gtcaaagagc atacctataa
601 gatcgagatg tgctataatc aagctttagg caaagtgaat gttctatctc
651 ctaacagaaa tgtccatgaa tggctgtaca gtttcaagcc aaatttcaat
701 caagttgaaa gcaacaacag aactgtgaat tctcttgcag tgaaatctct
751 actcatgtca gcagaaaaca acatcatgcc taactctcaa gcttttgtca
801 aagcttccac tgattctcat ttcaagctga gcctctggct aagggttcca
851 aaggttttga agcagatttc cattcagaaa ttgttcaagg ttgcaggaga
901 tgaaacaaat aaaacatttt atttatctat tgcctgcatt ccaaaccata
951 acagtgttga gacagcttta aacattactg ttatttgcaa gcatcagctc
1001 ccaattcgta aatgtgaagc tccttttgaa ttatcaatga tgttttctga
1051 tttaaaggag ccttacaaca ttgttcatga tccttcatat ccccaaagga
1101 ttgtccatgc tctgcttgaa actcacacat cttttgcaca agttctttgc
1151 aacaacttgc aagaagatgt gatcatttac actttgaaca accatgagct
1201 aactcctaga aagttagatt taggtgaaac aaccttgaat tacggtgaag
1251 atgcctacaa aaggaaatat ttcctttcaa aaacacttga atgtcttcca
1301 tctaacacac aaactatttc ttatttagac agcatccaaa tcccctcctg
1351 gaagatagac tttgccaggg gagaaattaa aatttctccg caatctattt
1401 cagttgcaaa atctttgtta aagcttgatt taagcgggat caaaaagaaa
1451 gaatctaaga ttaaggaagc atatgcttca ggatcaaaat gatcttgctg
1501 tgtccatcgt tttctaatta tgtcatgttt atttctttct ttacttacaa
1551 ttatttctct gtttgtcatt tctttcaaat tcctcctgtc tagtagaaac
1601 cataaaacaa aaataaaaaa taaaaaataa ataaaatcaa aataaaataa
1651 aaatcaaaaa atgaaataaa aacaacaaaa aaattaaaaa caaaaaacca
1701 aaaaagatcc cgaaagggac aattttggcc aaatttgggt tttgtttttg
1751 ttttttgttt tttgtttttt gttttatttt tattttattt atttttattt
1801 attttatttt atttttgttt ttattttatg tttttgttgt ttttgttatt
1851 ttgttattta ttaagcacaa cacacagaaa gcaaacttta attaaacaca
1901 cttattaaaa tttaacacac taagcaagca caagcaataa agataaagaa
1951 agctttatat atttataggc ttttttataa tttaacttac agctgctttt
2001 aagcaagttc tgtgagtttt gcctgttttt taaccccaaa catttcatag
2051 aacttgttaa gagtttcgct gtaatgttcc atagcaatac ttcctttagc
2101 attaggattg ctggagctaa gtatagcagc atactctttc cccttcttca
2151 cctgatcttc attcatttca aatgctttgc ttttcagcac agtgcaaact
2201 tttcctaagg cttccctggt gtcatacttc tttgggtcga tcccgaggtc
2251 cttgtatttt gcatcctgat atatagccaa gacaacactg atcatctcaa
2301 agctatcaac tgaagcaata agaggtaagc tacctcctag cattatggca
2351 agcctcacag actttgcatc atcaagaggt aatccatagg cttgaatcaa
2401 agggtgggaa gcaatcttag atttgatagt attgagattc tcagaattcc
2451 cagtttcctc aacaagcctg accctgatca agctatcaag ccttctgaag
2501 gtcatgtcag tggctccaat cctgtctgaa gttttcttta tggtaattct
2551 accaaaagta aaatcacttt gcttaataac cttcattatg ctctgacgat
2601 tcttcaggaa tgtcagacat gaaataatgc tcatcttttt gatctggtca
2651 aggttttcca gacaaaaagt cttgaagttg aatgctacca gattctgatc
2701 ttcctcaaac tcaaggtctt tgccttgtgt caacaaagca acaatgcttt
2751 ccttagtgag cttaacctta gacatgatga tcgtagaagt tgttatatgc
2801 tttgaccgta tgcaactcaa ggtgcaaaag tgcaactctg tatcccgcag
2851 tcgtttctta gggttttaat gtgatgattt gtaagactga gtgttaaggt
2901 ttgaataaaa ttgacacaat tgctct