Sequence of DPV Tomato spotted wilt virus
Tomato spotted wilt virus isolate CA-4 segment S, complete sequence.
ACC No: AY744471
Dated: 2005-01-08 | Length: 2921 | CRC: 307494311
!!NA_SEQUENCE 1.0
ID AY744471 standard; genomic RNA; VRL; 2921 BP.
XX
AC AY744471;
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SV AY744471.1
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DT 11-OCT-2004 (Rel. 81, Created)
DT 08-JAN-2005 (Rel. 82, Last updated, Version 2)
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DE Tomato spotted wilt virus isolate CA-4 segment S, complete sequence.
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KW .
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OS Tomato spotted wilt virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN [1]
RP 1-2921
RA Tsompana M., Abad J., Purugganan M., Moyer J.W.;
RT "The molecular population genetics of the Tomato spotted wilt virus (TSWV)
RT genome";
RL Mol. Ecol. 14(1):53-66(2005).
XX
RN [2]
RP 1-2921
RA Tsompana M., Abad J., Purugganan M., Moyer J.W.;
RT ;
RL Submitted (08-SEP-2004) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, North Carolina State University, 2518 Gardner Hall,
RL Raleigh, NC 27695-7616, USA
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FH Key Location/Qualifiers
FH
FT source 1. .2921
FT /country="USA:California"
FT /db_xref="taxon:11613"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Tomato spotted wilt virus"
FT /isolate="CA-4"
FT /specific_host="chrysanthemum"
FT /segment="S"
FT gene 89. .1492
FT /gene="NSs"
FT CDS 89. .1492
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q5XP61"
FT /gene="NSs"
FT /product="non-structural protein"
FT /protein_id="AAU95390.1"
FT /translation="MSSSVYESIIQTRASVWGSTASGKAVVDSYWIHELGTGSQLVQTQ
FT LYSDSRSKSSFSYTAKVGDLPCEEEEILSQHVYIPIFDDIDFSINIDDSVLALSVCSNT
FT VNANGVKHQGHLKVLSPAQLHSIGSIMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLS
FT CVKEHTYKIEMCYNQALGKVNVLSPNRNVHEWLYSFKPNFNQVESNNRTVNSLAVKSLL
FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRVPKVLKQISIQKLFKVAGDETNKTFYLSI
FT ACIPNHNSVETALNITVICKHQLPIRKCEAPFELSMMFSDLKEPYNIVHDPSYPQRIVH
FT ALLETHTSFAQVLCNNLQEDVIIYTLNNHELTPRKLDLGEITLNYGEDAYKRKYFLSKT
FT LDCLPSNTQTMSYLDSIQIPSWKIDFARGEIKISPQSISVAKSLLQLDLSGIKKKESKI
FT KEAYASGSK"
FT gene complement(1994. .2770)
FT /gene="Nc"
FT CDS complement(1994. .2770)
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q5XP64"
FT /gene="Nc"
FT /product="nucleocapsid protein"
FT /protein_id="AAU95391.1"
FT /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLENLDQI
FT KKMSIISCLTFLKNRQSIMKVIKQSDFTFGRITIKKTSDRIGATDMTFRRLDSLIRVRL
FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS
FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS
FT NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLTELA"
XX
SQ Sequence 2921 BP; 926 A; 552 C; 468 G; 975 T; 0 other;
AY744471 Length: 2921 January 11, 2005 08:38 Type: N Check: 9663 ..
1 agagcaattg tgtcataatt ttattcataa tcaaacctca cttagaaaat
51 cacaatactg taataagaac acagtaccaa taaccataat gtcttcaagt
101 gtttatgagt caatcattca gacaagagct tcagtctggg gatcaactgc
151 atctggtaaa gctgttgtag attcttactg gattcatgaa cttggtactg
201 gttctcaact agttcagacc cagctgtatt ctgattcaag aagcaaaagt
251 agctttagct atactgcaaa agtaggagat cttccttgtg aagaagaaga
301 gattctctct cagcatgtgt atatccccat ttttgatgat attgatttta
351 gcatcaatat tgatgactct gttctggcac tatctgtttg ctcaaataca
401 gtcaatgcta atggagtgaa acatcaaggt catttgaagg ttttgtctcc
451 tgctcagctc cactctattg gatctatcat gaacagatct gatattacag
501 accgattcca gctccaagaa aaagacataa ttcccaatga cagatacatt
551 gaagccgcaa acaaaggctc tttgtcttgt gtcaaagagc atacctataa
601 gatcgagatg tgctataatc aagctttagg caaagtgaat gttctatctc
651 ctaacagaaa tgtccatgaa tggctgtaca gtttcaagcc aaatttcaat
701 caagttgaaa gcaacaacag aactgtgaat tctcttgcag tgaaatctct
751 gctcatgtca gcagaaaaca acatcatgcc taactctcaa gcttttgtca
801 aagcttccac tgattctcat ttcaagctga gcctctggct aagggttcca
851 aaggttttga agcagatttc cattcagaaa ttgttcaagg ttgcaggaga
901 tgaaacaaat aaaacatttt atttatctat tgcctgcatt ccaaaccata
951 acagtgttga gacagcttta aacattactg ttatttgcaa gcatcagctc
1001 ccaatccgta aatgtgaagc tccttttgaa ttatcaatga tgttttctga
1051 tttaaaggag ccttacaaca ttgttcatga tccttcatat cctcaaagga
1101 ttgtccatgc tctgcttgaa actcacacat cttttgcaca agttctttgc
1151 aacaacttgc aagaagatgt gatcatttac actttgaaca accatgagct
1201 aactcctaga aagttagatt taggtgaaat aaccttgaat tacggtgaag
1251 atgcctacaa aaggaaatat ttcctttcaa aaacacttga ctgtcttcca
1301 tctaacacac aaactatgtc ttatttagac agcatccaaa tcccctcctg
1351 gaagatagac tttgccaggg gagaaattaa aatttctccg caatctattt
1401 cagttgcaaa atctttgtta cagcttgatt taagcgggat caaaaagaaa
1451 gaatctaaga ttaaggaagc atatgcttca ggatcaaaat gatcttgctg
1501 tgtccatcat tttctaatta tgttatgttt atttctttct ctacttataa
1551 ttatttctct gtttgtcatt tctttcaaat tcctcctgtc tagtagaaac
1601 cataaaacaa aaataaaaaa taaaataaaa tcaaaataaa ataaaaatca
1651 aaaaatgaaa taaaaacaac aaaaaaatta aaaacaaaaa accaaaaaag
1701 atcccgaaag ggacaatttt ggccaaattt gggttttgtt tttgtttttt
1751 gttttttgtt ttttgttttt atttttattt tatttatttt tatttatttt
1801 atttattttt gtttttattt tatgtttttt gttgtttttg ttattttgtt
1851 atttattaag cacaacacac aaaaagcaaa ctttaattaa acacacttat
1901 taaaatttaa cacactaagc aagcacaagc aataaagata aagaaagctt
1951 tatatattta taggcttttt tataatttaa cttacagctg cttttaagca
2001 agttctgtga gttttgcctg ttttttaacc ccaaacattt catagaactt
2051 gttaagagtt tcgctgtaat gttccatagc aatacttcct ttagcattag
2101 gattgctgga gctaagtata gcagcatact cttttccctt cttcacctga
2151 tcttcattca tttcaaatgc tttgcttttc agcacagtgc aaacttttcc
2201 taaggcttcc ctggtgtcat acttctttgg gtcgatcccg aggtccttgt
2251 attttgcatc ctgatatata gccaagacaa cactgatcat ctcaaagcta
2301 tcaactgaag caataagagg taagctacct cctagcatta tggcaagcct
2351 cacagacttt gcatcatcaa gaggtaatcc ataggcttga atcaaagggt
2401 gggaagcaat cttagatttg atagtattga gattctcaga attcccagtt
2451 tcctcaacaa gcctgaccct gatcaagcta tcaagccttc tgaaggtcat
2501 gtcagtggct ccaatcctgt ctgaagtttt ctttatggta attctaccaa
2551 aagtaaaatc actttgctta ataaccttca ttatgctctg acgattcttc
2601 aggaatgtca gacatgaaat aatgctcatc tttttgatct ggtcaaggtt
2651 ttccagacaa aaagtcttga agttgaatgc taccagattc tgatcttcct
2701 caaactcaag gtctttgcct tgtgtcaaca aagcaacaat gctttcctta
2751 gtgagcttaa ccttagacat gatgatcgta gaagttgtta tatgctttga
2801 ccgtatgcaa ctcaaggtgc aaaagtgcaa ctctgtatcc cgcagtcgtt
2851 tcttagggtt ttaatgtgat gatttgtaag actgagtgtt aaggtttgaa
2901 taaaattgac acaattgctc t