Sequence of DPV Tomato spotted wilt virus
Tomato spotted wilt virus isolate NC-2 segment S, complete sequence.
ACC No: AY744477
Dated: 2005-01-08 | Length: 3021 | CRC: 422856483
!!NA_SEQUENCE 1.0
ID AY744477 standard; genomic RNA; VRL; 3021 BP.
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AC AY744477;
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SV AY744477.1
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DT 11-OCT-2004 (Rel. 81, Created)
DT 08-JAN-2005 (Rel. 82, Last updated, Version 2)
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DE Tomato spotted wilt virus isolate NC-2 segment S, complete sequence.
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KW .
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OS Tomato spotted wilt virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN [1]
RP 1-3021
RA Tsompana M., Abad J., Purugganan M., Moyer J.W.;
RT "The molecular population genetics of the Tomato spotted wilt virus (TSWV)
RT genome";
RL Mol. Ecol. 14(1):53-66(2005).
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RN [2]
RP 1-3021
RA Tsompana M., Abad J., Purugganan M., Moyer J.W.;
RT ;
RL Submitted (08-SEP-2004) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, North Carolina State University, 2518 Gardner Hall,
RL Raleigh, NC 27695-7616, USA
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FH Key Location/Qualifiers
FH
FT source 1. .3021
FT /country="USA:North Carolina"
FT /db_xref="taxon:11613"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Tomato spotted wilt virus"
FT /isolate="NC-2"
FT /specific_host="peanut"
FT /segment="S"
FT gene 89. .1492
FT /gene="NSs"
FT CDS 89. .1492
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q5XP49"
FT /gene="NSs"
FT /product="non-structural protein"
FT /protein_id="AAU95402.1"
FT /translation="MSSSVYESIIQTRASVWGSTASGKAVVDSYWIHELGTGSQLVQTQ
FT LYSDSRSKSSFGYTAKVGDLPCEEEEILSQHVYIPIFDDIDFSINIDDSVLALSVCSNT
FT VNANGVKHQGHLKVLSPAQLHSIGSIMSRSDITDRFQLQEKDIIPNDRYIEAANKGSLS
FT CVKEHTYKIEMCYNQALGKVNVLSPNRNVHEWLYSFKPNFNQVESNNRTVNSLAVKSLL
FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRVPKVLKQISIQKLFKVAGDETNKTFYLSI
FT ACIPNHNSVETALNITVICKHQLPIRKCKAPFELSMMFSDLKEPYNIVHDPSYPQRIVH
FT ALLETHTSFAQVLSNNLQEDVIIYTLNNHELTPGKLDLGERTLNYSEDAYKRKYFLSKT
FT LECLPTNTQTMSYLDSIQIPSWKIDFARGEIKISPQSISVAKSLLKLDLSGIKKKESKV
FT KEAYASGSK"
FT gene complement(2094. .2870)
FT /gene="Nc"
FT CDS complement(2094. .2870)
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q9YIT0"
FT /gene="Nc"
FT /product="nucleocapsid protein"
FT /protein_id="AAU95403.1"
FT /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLGNLDQI
FT KKMSIISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL
FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS
FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMTEDQVKKGKEYAAILSSS
FT NPNAKGSVAMEHYSETLNKFYEMFGVKKQAKLTELA"
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SQ Sequence 3021 BP; 945 A; 559 C; 485 G; 1032 T; 0 other;
AY744477 Length: 3021 January 11, 2005 08:38 Type: N Check: 6482 ..
1 agagcaattg tgtcataatt ttattcttaa tcaaacctca cttagaaaat
51 cacaaaactg taataagaac acagtaccaa taaccataat gtcttcaagt
101 gtttatgagt caatcattca gacaagagct tcagtctggg gatcaactgc
151 atctggtaaa gctgttgtag attcttactg gattcatgaa cttggtactg
201 gttctcaact agttcagacc cagctgtatt ctgactcaag aagcaaaagt
251 agctttggct atactgcaaa agtaggggat cttccttgtg aagaagaaga
301 gattctttct cagcatgtgt atatccctat ttttgatgat attgatttta
351 gcatcaatat tgatgactct gttctggcac tatctgtttg ctcaaataca
401 gtcaatgcta acggagtgaa acatcaaggt catttgaagg ttttgtctcc
451 tgctcagctc cattctattg gatctatcat gagcagatct gatattacag
501 accgattcca gctccaagaa aaagacataa ttcccaatga cagatacatt
551 gaagctgcaa acaaaggctc tttgtcttgt gttaaagagc atacctataa
601 gatcgagatg tgctataatc aagctttagg caaagtgaat gttctatctc
651 ctaacagaaa tgtccatgaa tggctgtaca gtttcaagcc aaatttcaat
701 caagttgaaa gcaacaacag aactgtgaat tctcttgcag tgaaatctct
751 gctcatgtca gcagaaaaca acatcatgcc taactctcaa gcttttgtca
801 aagcttccac tgattctcat ttcaagctga gcctctggct aagggttcca
851 aaggttttga agcagatttc cattcagaaa ttgttcaagg ttgcaggaga
901 tgagacaaat aaaacatttt atttatctat tgcctgcatt ccaaaccata
951 acagtgttga gacagcttta aacattactg ttatttgcaa gcatcagctc
1001 ccaattcgta aatgcaaagc tcctttcgaa ttatcaatga tgttttctga
1051 tttaaaggag ccttacaaca ttgttcatga cccttcatat ccccaaagga
1101 ttgttcatgc tctgcttgaa actcacacat cttttgcaca agttcttagc
1151 aacaatttgc aagaagatgt gatcatttac accttgaaca accatgagct
1201 aacccctgga aagttagatt taggtgaaag aaccttgaat tacagtgaag
1251 atgcctacaa aaggaaatat ttcctttcaa aaacacttga atgtcttcca
1301 actaacacac aaactatgtc ttatttagac agcatccaaa tcccttcctg
1351 gaagatagac tttgccaggg gagaaattaa aatttctccg cagtctattt
1401 cagttgcaaa atctttgtta aagcttgatt taagcgggat caaaaagaaa
1451 gaatctaagg ttaaggaagc atatgcttca ggatcaaaat gatcttgctg
1501 tgtccagcct tttctaatta tgttatgttt attttctttc tttacttata
1551 attatttctc tatttgtcat ttctttcaaa ttcctcctgt ctagtagaaa
1601 ccataaaaac aaaaataaaa ataaaataaa atcaaaataa aataaaatca
1651 aaaaatgaaa taaaaaacaa aaaatattaa caaaaaaacc caaaaagatc
1701 ccgaaaggga caattttggc caaatttggg tttgtttttg ttgttttttg
1751 ttttttgttt tttgttttta ttttatttta ttttatttat ttttatttta
1801 tttttgtttt tatcttatgt ttttttgttg tttttgttat tttgttattt
1851 attaagcaca acacacagaa agcaaacttt attttatttt atttatttta
1901 ttttattttt gttcttatct tatgtttttt gttgtttttg ttattttgtt
1951 atttattaag cataacacac agaaagcaaa ctttaattaa acacacttat
2001 ttaaaattta acacactaag caagcataag caataaagat aaagaaagct
2051 ttatatattt ataggctttg tataatttaa cttacagctg cttttaggca
2101 agttctgtga gttttgcctg ttttttaacc ccaaacattt catagaactt
2151 gttaagagtt tcactgtaat gttccatagc aacacttcct ttagcattag
2201 gattgctgga actaagtata gcagcatact ctttcccctt cttcacctga
2251 tcttcagtca tttcaaatgc tttgcttttc agcacagtgc aaactttccc
2301 taaggcttcc ctggtgtcat acttcttcgg gtcaatcccg aggtccttgt
2351 attttgcatc ctgatatata gccaagacaa cactgatcat ctcaaagcta
2401 tcaactgaag caataagagg taagctacct cctagcatta tggcaagcct
2451 cacagacttt gcatcatcaa gaggtaatcc ataggcttga atcaaagggt
2501 gggaagcaat cttagatttg atagtattga gattctcaga attcccagtt
2551 tcctcaacaa gcctgaccct gatcaagcta tcaagccttc tgaaggtcat
2601 gtcagtggct ccaatcctgt ctgaagtttt ctttatggta attttaccaa
2651 aagtaaaatc actttgctta ataaccttca ttatgctctg acgattcttc
2701 aggaatgtca gacatgaaat aatgctcatc tttttgatct ggtcaaggtt
2751 tcctagacaa aaagtcttga agttgaatgc taccagattc tgatcctcct
2801 caaactcaag gtctttgcct tgtgtcaaca aagcaacaat gctttcctta
2851 gtgagcttaa ccttagacat gatgatcgta gaagttgtta tatgctttga
2901 ccgtatgtaa ttcaaggtgc aaaagtgcaa ctctgtatcc cgcagtcgtt
2951 tcttagggtt ttaatgtgat gatttgtaag actgagtgtt aaggtttgaa
3001 taaaattgac acaattgctc t