Sequence of DPV Tomato spotted wilt virus
Tomato spotted wilt virus isolate NC-5 segment M, complete sequence.
ACC No: AY744488
Dated: 2005-01-08 | Length: 4787 | CRC: -2102578870
!!NA_SEQUENCE 1.0
ID AY744488 standard; genomic RNA; VRL; 4787 BP.
XX
AC AY744488;
XX
SV AY744488.1
XX
DT 13-OCT-2004 (Rel. 81, Created)
DT 08-JAN-2005 (Rel. 82, Last updated, Version 2)
XX
DE Tomato spotted wilt virus isolate NC-5 segment M, complete sequence.
XX
KW .
XX
OS Tomato spotted wilt virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
XX
RN [1]
RP 1-4787
RA Tsompana M., Abad J., Purugganan M., Moyer J.W.;
RT "The molecular population genetics of the Tomato spotted wilt virus (TSWV)
RT genome";
RL Mol. Ecol. 14(1):53-66(2005).
XX
RN [2]
RP 1-4787
RA Tsompana M., Abad J., Purugganan M., Moyer J.W.;
RT ;
RL Submitted (08-SEP-2004) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, North Carolina State University, 2518 Gardner Hall,
RL Raleigh, NC 27695-7616, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .4787
FT /country="USA:North Carolina"
FT /db_xref="taxon:11613"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Tomato spotted wilt virus"
FT /isolate="NC-5"
FT /specific_host="tobbaco"
FT /segment="M"
FT gene 101. .1009
FT /gene="NSm"
FT CDS 101. .1009
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q5XP27"
FT /gene="NSm"
FT /product="non-structural protein"
FT /protein_id="AAV28059.1"
FT /translation="MLTLFGNKGSSKSARKDEGPLVSLAKHNGNVEVSKPWSSSDEKLA
FT LTKAMDTSKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV
FT GNGKQNANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMPSEKQV
FT ILKGQGTIIDPICFVFYLNWSIPKMNNTPENCCQLHLMCSQEYKKGVSFGSIMYSWTKE
FT FCDSPRADKDKSCMVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSLNLER
FT SVEEEEEGISDSVAQLSFDEI"
FT CDS complement(1282. .4689)
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q5XP26"
FT /note="G1, G2"
FT /product="glycoprotein precursor"
FT /protein_id="AAV28060.1"
FT /translation="MRILKLLELVVKVSLFTIALSSVLLAFLTFRATDAKVEIIRGDHP
FT EVYDDSAENEVPTAASIQRKAILETLTNLMLESQTPGTRQIREEESTIPIFAESTTQKT
FT ISVSDLPNNCLNASSLKCEIKGISTYNVYYQVENNGVIYSCVSDSAEGLGKCDNSLNLP
FT KSFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG
FT DCKITKSNFANPYTVSITSPEKIMGYLVKKPGENVEHKVISFSGSASITFTEEMLDGEH
FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN
FT KTTKPLFLWYDLIGLITYPILLLINCLWKYFPLKCSNCGNLCIITHECTKICICNKSKA
FT SKEHSSECPILSKEADHDYNKHKWTSMEWFHLIVNTKLSFSLLKFVTEILIGLIILSQM
FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPEKDQCYCNVKEDKIIESIFGTNIVIEG
FT PNDCIENQNCVADPSIDNLIKCRLGCEYLDLFRNKPLYNGFSDYTGSSLGLTSVGLYEA
FT KRLRNGIIDSYNRTDKISGMIAGDSLSKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ
FT SLLGGGGTIFMLNDKTSETAKKFVIYIKSVGIHYEVLEKYTTAPIQSTHTDFYSTCTGN
FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL
FT KSTIVADVCISGILGGLCSRITEEVPYENALFQADIQADLHNDGITIGELIAHGPDSHI
FT YSGNIANLNDPVKMFGHPQLTHDGVPIFTKKTLEGDDMSWDCAAIGKKSITIKTCGYDT
FT YRFRSGLEQISDIPVSFKDFSSFFLEKAFSLGKLKIVVDLPSDLFKVAPKRPSITSTSL
FT NCNGCLLCGQGLSCVLEFFSDLTFSTAISVDACSLSTYQLAVKKGSNKYNITMFCSANP
FT DKKKMTLYPEGNPDISVEVLVNNVVVEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI
FT KSPFNFIASYFGSFFDTIRVILLIAFIFLVIYFCSILTTICKGYVKNESYKSRSKIEDD
FT DDSEINAPMLMKDTMTRRRPPMDFSHLV"
XX
SQ Sequence 4787 BP; 1534 A; 873 C; 850 G; 1530 T; 0 other;
AY744488 Length: 4787 January 11, 2005 08:38 Type: N Check: 446 ..
1 agagcaatca gtgcgtcaga aatataccta ttatacactt tgctaagaat
51 caatcaatta cattacacaa gctcctctac cttaggctgt tgaactcaaa
101 atgttgactc ttttcggtaa taaggggtct tctaagtctg ccagaaagga
151 cgaaggtcct ttagtttcac ttgctaaaca taatggtaat gttgaagtct
201 ctaagccatg gtcttcttct gatgaaaagc ttgctttgac taaagctatg
251 gatacatcca aaggaaagat actgttgaac acagaaggaa catcttcctt
301 tggaacctat gaatctgatt ctatcacaga atcagagggt tacgatcttt
351 ctgcaagaat gatagtagat acaaaccatc atatctcaaa ctggaaaaat
401 gatctttttg ttggcaacgg gaaacaaaac gcaaataagg tcatcaagat
451 ctgtccaact tgggacagca gaaaacaata catgatgatt tccaggattg
501 tgatatgggt ctgccccact ataccaaacc ctacaggaaa acttgtggtt
551 gccctggttg atcccaacat gccatctgag aagcaagtca ttctgaaggg
601 tcaggggaca ataattgatc ctatatgttt tgtcttttat ctgaactggt
651 ctattccgaa aatgaataac actccagaaa actgctgtca gctgcatttg
701 atgtgcagcc aagaatacaa gaagggggtt tcttttggta gtatcatgta
751 ttcttggaca aaggagtttt gtgattcacc cagagctgat aaagataaaa
801 gttgcatggt tatacctcta aacagagcta ttagagctag atctcaagca
851 ttcattgagg cttgcaagct gataatccct aaaggaaaca gtgaaaagca
901 gattaaaaaa cagcttaaag aattgagctt aaatcttgag agatcagttg
951 aagaagaaga ggaagggatt tctgatagtg ttgctcagtt atcttttgat
1001 gaaatatagt acttttaatg tcacttattt aagcttaaat ttctgttaat
1051 tgtgcattta aatcgaaaac caaaacaaaa aacaagaaga aaaaacaaaa
1101 aatcaaaaac aaaaaacaaa aacaaaataa ggctgaaaag ccaaactttg
1151 gtccgaagac tctttttgtt gttttttgtt tatttgtata tatatttttt
1201 gtttgttttt tatttatttt atacatacat aatctgacta atgtagaaga
1251 ttggatcaaa ttcagcctgt gacaagcaga ctcagacaag gtgagagaaa
1301 tccataggtg gccttcgtct tgtcattgta tctttcatta acataggggc
1351 gttgatttca gaatcatcat catcctctat cttggatcta gatttataag
1401 attcattttt gacatatccc ttacaaatgg ttgttagaat agaacagaaa
1451 taaatcacaa ggaaaatgaa tgcaataagc aatatcactc tgatagtatc
1501 aaaaaatgag ccaaaataac ttgcaatgaa attgaatggg cttttaatat
1551 aatcccagaa gccccatgct gaagaatcag aattatattg ttgttcttca
1601 tgagcatact catcattttg atctattatg ttctctggtt cttctacaac
1651 aacattattg accagaactt ccacagaaat atccggattg ccttctggat
1701 acaacgtcat tttcttcttg tccggattag cagaacaaaa cattgttatg
1751 ttgtatttat tagatccttt tttaacagcc agctgataag tagatagaga
1801 gcaagcatct acagaaattg cagtagaaaa tgtcaaatct gagaaaaatt
1851 ccaaaacgca agataaacct tgaccgcata gaagacagcc gttgcaattt
1901 aagcttgttg aagttatgga aggtctctta ggagcaactt taaaaagatc
1951 tgatggaaga tcaacgacaa tcttgagttt ccctagactg aaagcttttt
2001 ccaagaaaaa actagagaaa tctttgaaac taacgggaat atctgatatt
2051 tgctctaaac cagatctaaa tctgtatgta tcatatccgc atgttttaat
2101 agtgattgat tttttcccta tcgctgcaca atcccaagac atatcatctc
2151 cttctagagt tttcttagta aaaataggca ctccatcatg agtcaattgt
2201 gggtgaccaa acattttcac aggatcattc aagtttgcaa tatttccaga
2251 ataaatatgg ctgtcaggcc catgggctat cagttcacct atagtaatac
2301 catcattgtg caaatctgct tgtatatcag cttgaaacaa agcattttca
2351 taaggaacct cttcagtaat ccttgagcac agacctccta aaataccaga
2401 aatacaaaca tctgccacta tagttgattt taacactgaa taaattctgt
2451 atgatttatc catgtcatag atattccgac agaatccaca tgtagcgcct
2501 tcattaattg caaaacacca agcttcttca catccccaat aagaagttgg
2551 tgttatgcaa aaatcttgga aaccagttaa agcttgattt tttctgcaag
2601 tgtcacagtt tcctgtacaa gtggaataaa aatctgtgtg ggtgctttgg
2651 ataggagctg ttgtgtattt ttctaacact tcataatgaa ttcccacact
2701 tttgatataa atcacaaatt tttttgctgt ttctgaggtt ttatcattta
2751 acatgaatat agtccctcct cctcctaaaa gagattgttc tatcatgtat
2801 ctatatttcc cgtccacaac agaatcaaag atcaatgatt gtctaggcag
2851 aatgttctct ggtatgcttg tttcattttt gctcagagaa tctcctgcaa
2901 tcattccaga aattttgtct gtacgattat aagaatctat tataccattc
2951 ctcaatctct tagcctcata cagaccaacc gatgttaacc ctaaagagct
3001 tcctgtataa tctgaaaacc cattatacaa aggtttgttc cgaaacaaat
3051 ctaggtactc gcaacccagt ctgcatttta taagattatc aatagacggg
3101 tctgcaacac aattctggtt ctctatgcaa tcatttggac cttctataac
3151 aatgttagtg ccaaagatac tttctataat cttatcttct ttcacattac
3201 agtaacattg atctttttct gggcatttct caaatttact tgtaaccaaa
3251 aatggacagc ctggaacata aaaacatcca ctcaaacatt gggtagtttg
3301 agccatagac atgggcattt gagacaaaat gatcaaacct attaagattt
3351 cagttacaaa tttcagcaaa ctaaagctca gcttagtgtt cactattaga
3401 tggaaccact ccatgctagt ccacttgtgt ttgttgtagt catgatctgc
3451 ttctttggac aatatgggac actctgaaga atgttctttt gaagctttgc
3501 ttttgttgca gatgcaaatt ttagtacatt catgtgtgat tatgcacaaa
3551 ttgccacagt tagaacattt aagtggaaaa tatttccata agcagtttat
3601 gagcaacaaa atagggtatg tgatcaagcc tatgagatca taccagagaa
3651 agaggggttt ggttgtcttg tttactaacc accggatagg gaaatagatc
3701 aacaaagcta tcaatattaa tcttatccaa gaaaaattga tgcaggctgt
3751 ttgtttataa atgctttttg aatatttgat tatgcaatct ctaactcttt
3801 tgtttgtttt tggtatttta gctgatttgt caccgcacag gagattgtgc
3851 tcaccatcca acatttcctc agtaaaagtg atgcttgctg atccggaaaa
3901 ggatatgacc ttgtgttcca cattttcacc aggctttttt accaaataac
3951 ccatgatctt ctcggggcta gtgatgctaa cagtataagg attggcaaag
4001 ttcgatttag ttattttgca gtcaccagat aactttacag tttgtaatga
4051 cactgttcca ttagtagggt acgagttata ggttatagga taattatctt
4101 gtgtcaggct ttctgaaatg aagaattttg ttccaactga aaaatgcctt
4151 ttgttgtcaa gtttggtaat gggaataacc gggactttgg agaaactctt
4201 tggcagattt aaagaattgt cacattttcc taaaccttcc gctgaatcag
4251 aaacacagga atatatgaca ccattatttt ccacttgata ataaacatta
4301 taagtggata tcccttttat ctcacatttt aatgaagaag cattcaagca
4351 gttgttagga agatccgaga cagagattgt tttttgcgta gttgactcag
4401 caaaaatagg gatggttgat tcttcttctc gtatctgacg ggttccagga
4451 gtctgagatt ctagcatcag attagtcaaa gtctccaaga tagccttgcg
4501 ttgaatcgat gcagcagtgg gtacttcatt ctcagcagaa tcatcataaa
4551 cctcaggatg gtctccacga attatttcta ctttggcatc tgtggctctg
4601 aaggtcaaga atgccaacaa gacagaactc agggcaattg tgaaaagact
4651 cacttttacc actagttcta gtagttttaa aattctcatc ttagacgtct
4701 gttcagatta taatggttat atgattaatt tcaagatgtc tggattaagg
4751 tttttgtttg cactgattgc tctgctctgg ctacccc