Sequence of DPV East African cassava mosaic virus
East African cassava mosaic virus isolate TZM segment A, complete sequence.
ACC No: AY795986
Dated: 2005-04-22 | Length: 2804 | CRC: -1454864489
!!NA_SEQUENCE 1.0
ID AY795986 standard; genomic DNA; VRL; 2804 BP.
XX
AC AY795986;
XX
SV AY795986.1
XX
DT 24-MAR-2005 (Rel. 83, Created)
DT 22-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE East African cassava mosaic virus isolate TZM segment A, complete sequence.
XX
KW .
XX
OS East African cassava mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2804
RX PUBMED; 15784145.
RA Ndunguru J., Legg J., Aveling T., Thompson G., Fauquet C.;
RT "Molecular biodiversity of cassava begomoviruses in Tanzania: evolution of
RT cassava geminiviruses in Africa and evidence for East Africa being a center
RT of diversity of cassava geminiviruses";
RL (er) Virol. J. 2 (1), 21 (2005)
XX
RN [2]
RP 1-2804
RA Ndunguru J., Fauquet C.M.;
RT ;
RL Submitted (27-OCT-2004) to the EMBL/GenBank/DDBJ databases.
RL ILTAB, Donald Danforth Plant Science Center, 975 North Warson Road, St.
RL Louis, MO 63132, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .2804
FT /country="Tanzania"
FT /db_xref="taxon:62079"
FT /mol_type="genomic DNA"
FT /organism="East African cassava mosaic virus"
FT /strain="Kenya"
FT /isolate="TZM"
FT /segment="A"
FT gene 174. .533
FT /gene="AV2"
FT CDS 174. .533
FT /codon_start=1
FT /gene="AV2"
FT /product="AV2"
FT /protein_id="AAX39358.1"
FT /translation="MWDPLLNEFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL
FT IGVLRCKSYVEATRRYHNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQKYGANRPHV
FT SEAQDVQNVSKPKCP"
FT gene 334. .1110
FT /gene="AV1"
FT CDS 334. .1110
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AAX39359.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKNMG
FT PTGPMYRKPKMYRMYRSPNVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITH
FT RVGKRFCVKSIYILGKIWMDENVKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDN
FT EPTTATVKNDLRDRYQVLRKFYATVVGGPSGMKEQSLVKRFFRINNHVVYNHQEQAKYE
FT NHTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT gene complement(1107. .1511)
FT /gene="AC3"
FT CDS complement(1107. .1511)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer"
FT /protein_id="AAX39363.1"
FT /translation="MDSRTGELITAPQARNGVFTWEITNPLYFEITNHDKRPGNMNHDI
FT ITLQIRFNHNLRKALGIHKCFLNFKVWTTLRPQTGLFLRVFRYQVLKYLDMIGVISINT
FT VLHAVDHVLYDVLLNTLQVTEQHAIKFNLY"
FT gene complement(1252. .1659)
FT /gene="AC2"
FT CDS complement(1252. .1659)
FT /codon_start=1
FT /gene="AC2"
FT /product="transactivator protein"
FT /protein_id="AAX39362.1"
FT /translation="MPPSSPSTSHCSLVPIKVQHRTAKTRAVRRRRVDLGCGCSFYLHI
FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRNHQPRQEAREHEPRHHHTPDTVQPQ
FT PPEGIGDSQVFSQLQGLDDLTASDWSFLKSI"
FT gene complement(1568. .2647)
FT /gene="AC1"
FT CDS complement(1568. .2647)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication-associated protein"
FT /protein_id="AAX39360.1"
FT /translation="MPRAGRFQINAKNYFITYPRCSLTKEEALSQLQALSYPTNIKFIR
FT VCRELHQDGVPHIHVLIQFEGKFQCTNPRFFDLISPSRSSHFHPNIQGAKSSSDVKAYI
FT EKGGEFLDDGIFQVDARSARGEGQHLAQVYAEALNASSKSEALQIIKEKDPKSFFLQFH
FT NISANADRIFQAPPQTYVSPFLSSSFTQVPEDIEVWVSENICSPAARPWRPISIVLEGD
FT SRTGKTLWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPPLPQTLKEFMGAQKDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKAWALKNATFITIHEPL
FT FSSAHQSPTPHSEDQGRQT"
FT gene complement(2257. .2490)
FT /gene="AC4"
FT CDS complement(2257. .2490)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4"
FT /protein_id="AAX39361.1"
FT /translation="MGCLISMFSSNSKASSNVPTRDSSISFPHPDHHISIRTFRALNRR
FT PMSRLTLKREGNFLTMEFSKSMPEVQGERASI"
XX
SQ Sequence 2804 BP; 724 A; 554 C; 734 G; 792 T; 0 other;
AY795986 Length: 2804 April 26, 2005 08:32 Type: N Check: 8619 ..
1 accggatggc cgcgcctgaa aaagtaggtg gaccccagag gatggccgcg
51 cccgtgaaag aaagtggtcc ctgcgcactt gttttggtcg gccagtcata
101 tgcacgcgtg aaagtctaga tatttgttgt tcgtctttat agacttcgtc
151 gcgaagtagt ggagcgcgtc aacatgtggg atccattgtt gaacgagttt
201 cccgaaaccg ttcacggttt ccgttctatg cttgctgtta aatacctgtt
251 acatcttgaa caggaatacg atcgcggtac tgtcggggct gagtatatac
301 gggatctaat aggggttcta cggtgtaaga gttatgtcga agcgaccagg
351 agatatcata atctcaacac ccgtatccaa ggtgcggagg aggctgaact
401 tcgacagccc atacacgaac cgtgttgttg cccccactgt ccgcgtcacc
451 agaagcaaaa atatggggcc aacaggcccc atgtatcgga agcccaagat
501 gtacagaatg tatcgaagcc caaatgtccc taagggctgt gaaggcccat
551 gtaaggttca gtcctatgaa cagagggatg atgttaagca cactggtatg
601 gtccgatgtg tcagtgatgt tactcgtggg tcaggcatta cccatagagt
651 cgggaagagg ttttgtgtga agtccatata tatattgggc aagatctgga
701 tggatgagaa tgtcaagaag caaaatcata cgaaccatgt tatgttcttc
751 cttgttcgag atagaaggcc ttatgggccg agtccgcaag attttggaca
801 agtgttcaac atgtttgata atgaacctac tactgcaact gtgaagaatg
851 atcttaggga ccggtatcag gtgttacgta aattctatgc gactgttgtt
901 ggtggaccct ctgggatgaa ggaacaatcg ttggttaaga ggttttttag
951 gatcaataat catgtagtgt ataatcatca ggaacaggcc aagtatgaga
1001 atcatactga gaatgcgttg ttattgtata tggcatgtac acatgcctcg
1051 aatcctgtgt acgctacgct gaaaatacgc atttatttct atgatgcagt
1101 gacaaattaa taaaggttga attttattgc atgttgctcc gtaacttgga
1151 gtgtgtttag taatacatcg tacagaacat gatcaacagc gtgaagtaca
1201 gtgttaatgg aaataacgcc tatcatatct aaatacttga gcacttgata
1251 tctaaatact cttaagaaaa gaccagtctg aggccgtaag gtcgtccaga
1301 ccttgaagtt gagaaaacac ttgtgaatcc ccaatgcctt ccggaggttg
1351 tggttgaacc gtatctggag tgtgatgatg tcgtggttca tgttccctgg
1401 cctcttgtcg tggttggtga tttcgaaata gaggggattt gttatttccc
1451 aggtaaaaac gccattcctt gcttgaggcg cagtgatgag ttcccctgtg
1501 cgagaatcca tggttgatgc agtcgatatg gagatagaac gagcagccgc
1551 atccgaggtc tacgcgccta cgtctgacgg ccctggtctt cgctgtgcgg
1601 tgttggactt tgatgggcac tagagaacaa tggctcgtgg atggtgatga
1651 aggtggcatt ctttaaagcc caggctttaa gggactggtt cttttcctcg
1701 tccagaaact ctttatatga tgatgttggt cctggattgc agaggaagat
1751 cgtgggaatg ccgcctttaa tttgaattgg cttcccgtac tttgtattgc
1801 tttgccagtc cttttgggcc cccatgaatt ccttaagtgt ttgaggtagt
1851 ggggggtcga cgtcatcaat gacgttgtac caggcgtcgt tgctgtagac
1901 ctttggacta agatccaggt gtccacacaa gtagttgtgt ggtcccagag
1951 agcgggccca cagtgttttc ccggttcggc tatcaccttc tagaacaata
2001 ctgatcggtc tccatggccg cgcagcggga ctgcatatat tttcggagac
2051 ccatacttca atatcttctg ggacttgtgt aaaagaggag gataagaacg
2101 gactaacgta agtttgtggc ggagcctgga agattctatc tgcgttagca
2151 gatatgttat ggaactgtaa aaaaaaggat tttggatctt tttctttaat
2201 aatttgaaga gcttctgatt tagaagaagc attcaacgct tctgcatata
2251 cctgggctaa atgctggccc tctccccttg cacttctggc atcgacttgg
2301 aaaattccat cgtcaagaaa ttcccctccc ttttcaatgt aagccttgac
2351 atcggacgac gatttagcgc cctgaatgtt cggatggaaa tgtgatgatc
2401 gggatgggga aatgagatcg aagaatctcg ggttggtaca ttggaacttg
2451 ccttcgaatt ggatgagaac atggatatga ggcaccccat cttgatgtag
2501 ttctctgcaa accctaatga atttgatatt cgtcgggtac gaaagggctt
2551 gtaattggga aagggcctct tcctttgtta atgagcatcg gggataggtt
2601 atgaaataat ttttggcatt gatttgaaaa cgaccggctc tcggcatatt
2651 tgctgtcgtt ttggaacggg ggacactcaa aactccaggg gaacggtgga
2701 atggggggca ttatatagga tgtcccccaa tggcatatgt gtaaataggt
2751 aaacatccat tcaaaatttg aatgtcgaat attggcggcc atccgattaa
2801 tatt