Sequence of DPV Cardamom mosaic virus

Indian cardamom mosaic virus isolate SKP1 polyprotein gene, partial cds.

ACC No: AY823985

Dated: 2005-12-08 | Length: 1828 | CRC: -1354095013

                
ID   AY823985   standard; genomic RNA; VRL; 1828 BP.
XX
AC   AY823985;
XX
SV   AY823985.1
XX
DT   05-DEC-2005 (Rel. 86, Created)
DT   08-DEC-2005 (Rel. 86, Last updated, Version 4)
XX
DE   Indian cardamom mosaic virus isolate SKP1 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Indian cardamom mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Macluravirus.
XX
RN   [1]
RP   1-1828
RA   Smitha R., Krishna Reddy M.;
RT   "Genetic diversity of Cardamom mosaic virus infecting cardamom";
RL   Unpublished.
XX
RN   [2]
RP   1-1828
RA   Smitha R., Krishna Reddy M.;
RT   ;
RL   Submitted (12-NOV-2004) to the EMBL/GenBank/DDBJ databases.
RL   Division of Plant Pathology, Indian Institute of Horticultural Research,
RL   Hessaraghatta Lake PO, Bangalore, Karnataka 560089, India
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1828
FT                   /country="India:Lalshmipura, Sakaleshpur, Hassan district"
FT                   /db_xref="taxon:152006"
FT                   /mol_type="genomic RNA"
FT                   /note="biotype: mosaic"
FT                   /organism="Indian cardamom mosaic virus"
FT                   /isolate="SKP1"
FT                   /isolation_source="infected cardamom leaves"
FT                   /specific_host="cardamom"
FT   CDS             <1. .1593
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="AAX31142.1"
FT                   /translation="GNNSGQPSTVVDNTLILMMSFYYAYIMKTQDFNCECLNDCMRFVC
FT                   NGDDNKFSLAPDFVERYGGEFTTEIKQLGLTYEFDDLTEDITENPYMSLTMVRTCSGIG
FT                   FSLHPSRVVAIVQWIKKGDIIQATQAAFAAMVEAYNDPWLFSILHLYLVWLIIEYKDAL
FT                   NFARVNGIFGVVYMDPCQVHALHYGIPTANELKEDEDYDDDSDEDLEIVEFCSQQFQMD
FT                   LVGTPTAPRQGSTIAPASTSGTASTNLPGSGGTRTAPLAPITGQQHAENPPQPIESFDA
FT                   QQQDFAPSGGDDDTDIQWRIPPTPRRLSHFNNPRVKGKRIWNRKIINSIAKEQFTQSSQ
FT                   LATTLQFEKWAEDVRKSLGTPNEDDFQNLFNIMVFVVCQQPEPLQKSDVNPKHWKIHSG
FT                   GKYSTIPIAIFVEPAVPNGGLRKIMRHLSDITSQILAKGGKMTAWGTKRGYTQLAMIPY
FT                   AFDFCVQTNGMPKTVREQLNQGKAAAIGSGYQRVMLLDGKVQRSKTSYERHVDTDVDEF
FT                   EHGSMGEPQATLY"
FT   mat_peptide     1. .660
FT                   /note="nuclear inclusion body protein"
FT                   /product="NIb"
FT   mat_peptide     661. .1590
FT                   /note="capsid protein"
FT                   /product="coat protein"
FT   3'UTR           1594. .1812
XX
SQ   Sequence 1828 BP; 587 A; 357 C; 408 G; 476 T; 0 other;

ay823985 Length: 1828  08-DEC-2005  Type: N  Check: 5532  ..

       1  ggtaataaca gtgggcaacc aagcacagtc gttgacaaca cgttgatctt
      51  gatgatgtca ttttattacg cttacattat gaagacacaa gattttaatt
     101  gtgagtgttt aaatgattgc atgcggtttg tttgtaatgg ggatgacaac
     151  aaattctcac tggctccaga ttttgttgag agatatggag gagaattcac
     201  aactgagatc aaacaacttg gtttaacata tgaatttgat gatctcacgg
     251  aagatataac agagaaccct tacatgagtt tgacaatggt ccggacatgt
     301  agtggcatcg gtttttcttt acatccttct agagttgttg ccattgttca
     351  gtggataaag aaaggagaca taattcaagc aacacaagca gcatttgcag
     401  caatggtgga agcatataac gacccatggt tgttcagtat tctacatctt
     451  tatttagttt ggttaattat tgaatataaa gatgctttaa attttgccag
     501  ggtcaatggc atttttggtg ttgtgtatat ggatccgtgc caagttcacg
     551  cattgcacta tggcattcca acagcaaatg agcttaaaga ggacgaggat
     601  tacgacgatg acagtgatga agaccttgaa attgtagagt tttgttccca
     651  gcaatttcag atggatctgg ttggaacacc aacagcccca agacaaggta
     701  gtacaatagc accagcaagt acatctggca cagccagcac taacctacca
     751  ggcagtggcg gaaccaggac agcaccactt gcaccaataa caggccagca
     801  acatgcggaa aacccgcctc aaccgattga aagctttgat gctcagcaac
     851  aagattttgc acctagcggc ggtgatgacg acacggacat tcagtggaga
     901  atacccccaa caccaaggag gttaagtcac ttcaacaacc cacgcgtgaa
     951  aggtaaaagg atttggaaca gaaagataat caacagcatc gcaaaggaac
    1001  agttcacaca atcatcacaa ttagcaacaa ctttgcagtt tgagaaatgg
    1051  gctgaagatg ttaggaagag tcttggcaca ccaaatgaag atgactttca
    1101  aaatctattt aacatcatgg tgtttgtggt gtgccaacaa ccggaacctc
    1151  ttcagaagtc cgacgtcaac ccaaaacatt ggaaaattca ctcaggtggg
    1201  aagtactcca caatacccat cgccattttt gttgaaccag cagtgccaaa
    1251  cggagggctt cggaaaatta tgagacatct cagtgatatt acatcacaaa
    1301  tactagccaa aggaggaaaa atgacggcat ggggaacaaa gagaggttac
    1351  acacagcttg caatgatacc atacgctttt gatttttgcg tccaaacgaa
    1401  tgggatgccc aaaacagtgc gcgagcaatt gaatcaagga aaagctgctg
    1451  caattggttc aggttaccag cgagtgatgc tactagatgg gaaggttcag
    1501  cgaagcaaga cgagttatga gaggcatgtc gacactgatg tcgacgaatt
    1551  tgaacatggc tcaatgggtg agccacaagc aactctatat tgaacatatc
    1601  agtatgtcaa tttagtgtgt ttactaatat gcacttatct tatataatta
    1651  gatgttttct tttcttgttc gctgtgtcta taggttcaat gggagttttt
    1701  gtgggttttc ttccaacgcc tagtaaccct caacacagca ttctaaggtt
    1751  gttctggagg aacacctggc aacgcacttg cgtagtttat cctattaccg
    1801  tagaaggtta taaaaaaaaa aaaaaaaa