Sequence of DPV Cardamom mosaic virus

Indian cardamom mosaic virus isolate SKP-3 polyprotein gene, partial cds.

ACC No: AY823986

Dated: 2005-12-08 | Length: 1827 | CRC: -1441875171

                
ID   AY823986   standard; genomic RNA; VRL; 1827 BP.
XX
AC   AY823986;
XX
SV   AY823986.1
XX
DT   05-DEC-2005 (Rel. 86, Created)
DT   08-DEC-2005 (Rel. 86, Last updated, Version 4)
XX
DE   Indian cardamom mosaic virus isolate SKP-3 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Indian cardamom mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Macluravirus.
XX
RN   [1]
RP   1-1827
RA   Smitha R., Krishna Reddy M.;
RT   "Genetic diversity of Cardamom mosaic virus infecting cardamom";
RL   Unpublished.
XX
RN   [2]
RP   1-1827
RA   Smitha R., Krishna Reddy M.;
RT   ;
RL   Submitted (12-NOV-2004) to the EMBL/GenBank/DDBJ databases.
RL   Division of Plant Pathology, Indian Institute of Horticultural Research,
RL   Hessaraghatta Lake PO, Bangalore, Karnataka 560089, India
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1827
FT                   /country="India:Lakshmipura, Sakaleshpur, Karnataka"
FT                   /db_xref="taxon:152006"
FT                   /mol_type="genomic RNA"
FT                   /note="biotype: chlorotic streaks"
FT                   /organism="Indian cardamom mosaic virus"
FT                   /isolate="SKP-3"
FT                   /specific_host="cardamom"
FT   CDS             <1. .1587
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="AAX31143.1"
FT                   /translation="GNNSGQPSTVVDNTLILMMSFYYAYIMKTQDFNCECLNDCMRFVC
FT                   NGDDNKFSLAPNFVERYGGEFTTEIKQLGLTYEFDDLTEDITENPYMSLTMVRTCSGIG
FT                   FSLHPSRVVAIVQWIKKGDIIQATQAAFAAMVEAYNDPWLFSILHLYLVWLIIEYKDAL
FT                   NFARVNGIFGVVYMDPCQVHALHYGIPTANELKEDEDYDDDSDEDLKIVESCSQQFQMD
FT                   LVGTPTAPRQGSTIAPASTSGTASTNLPGSGGARTAPLAPITGQQHVENPLQPVESFGA
FT                   QQQDFAPSGGDDDTDIQWRIPPTPRRLSHFNNPRVKGKRIWNRKIINSIAKEQFTQSSQ
FT                   LATTLQFEKWAEDVRKSLGTPNEDDFQIYLTSWCLWCANNGTSSEVDVNQNMEIHSGGK
FT                   YSTIPIAIFVEPAVQNGGLRKIMRHLSDITSQILAKGGKMTAWGTKRGYTQLAMIPYAF
FT                   DFCVQTNGMPKTVREQLNQGKAAAIGSGYQRVMLLDGKVQRSKTSYERHVDTDVDEFEH
FT                   GSMGEPRATLY"
FT   mat_peptide     1. .660
FT                   /note="nuclear inclusion body protein"
FT                   /product="NIb"
FT   mat_peptide     661. .1584
FT                   /note="capsid protein"
FT                   /product="coat protein"
FT   3'UTR           1588. .1812
XX
SQ   Sequence 1827 BP; 586 A; 353 C; 414 G; 474 T; 0 other;

ay823986 Length: 1827  08-DEC-2005  Type: N  Check: 3192  ..

       1  ggtaacaata gtgggcagcc aagcacagtc gttgacaaca cgttgatctt
      51  gatgatgtca ttttattacg cttacattat gaagacacaa gattttaatt
     101  gtgagtgttt aaatgattgc atgcggttcg tttgtaatgg ggatgacaac
     151  aaattctcac tggctccaaa ttttgttgag agatatggag gagaattcac
     201  aactgagatc aaacaacttg gtttaacata tgaatttgat gatctcacag
     251  aagatataac agagaaccct tacatgagtt tgacaatggt ccggacatgt
     301  agtggcatcg gtttttcttt acatccttct agagttgttg ccattgttca
     351  gtggataaag aaaggagaca taattcaagc aacacaagca gcatttgcag
     401  caatggtgga agcatataac gacccatggt tgtttagcat tctacatctt
     451  tatttagttt ggttaattat tgaatataaa gatgctttaa attttgccag
     501  ggtcaatggc atttttggtg ttgtgtatat ggatccgtgc caagttcacg
     551  cattgcacta tggcattcca acagcaaatg agcttaaaga ggacgaggat
     601  tacgacgatg acagtgatga agacctgaaa attgtagagt cttgttccca
     651  gcaatttcag atggatctgg ttggaacacc aacagcccca agacaaggta
     701  gcacaatagc accagcaagt acatctggca cagccagcac taatctacca
     751  ggcagtggcg gagccaggac agcaccactt gcaccaataa caggccagca
     801  acatgtggaa aacccgctgc aaccggttga gagctttggt gctcagcaac
     851  aagattttgc acctagcggc ggtgatgacg acacggacat tcagtggaga
     901  atacccccaa cgccaaggag gttgagtcac ttcaacaacc cacgcgtgaa
     951  aggtaaaagg atttggaaca gaaagataat caacagcatc gcaaaggaac
    1001  agttcacaca atcatcacaa ctagcaacaa ctttgcagtt tgagaaatgg
    1051  gctgaagatg ttaggaagag tcttggcaca ccaaatgaag atgactttca
    1101  aatctattta acatcatggt gtttgtggtg tgccaacaac ggaacctctt
    1151  cagaagtcga cgtcaaccaa aacatggaaa ttcactcagg tgggaagtac
    1201  tccacaatac caatcgccat ctttgttgaa ccagcagtgc aaaacggagg
    1251  gcttcggaaa attatgagac atctcagtga tattacatca caaatactag
    1301  ccaaaggagg aaagatgacg gcatggggaa caaagagagg ttacacacag
    1351  cttgcaatga taccatacgc ttttgatttt tgcgtccaaa cgaatgggat
    1401  gcccaaaaca gttcgcgagc aattgaatca aggaaaagct gctgcaattg
    1451  gttcgggtta ccagcgagtg atgctactag atgggaaagt ccagcgaagc
    1501  aagacgagtt atgagagaca tgtcgacact gatgtcgacg aatttgaaca
    1551  tggctcaatg ggtgagccac gagcaactct atattgaaca tatcagtatg
    1601  tcaatttagt gtgtttacta atatgcactt attttatata attagatgtt
    1651  ttcttttctt gttcgctgtg tctataggtt caatgggagt ttttgtgggt
    1701  tttcttccaa cgcctagtaa ccctcaacac agcattttaa ggttgttctg
    1751  gaggaacacc tggcaacgca cttgcgtagt ttatcctatt accgtagaag
    1801  gttataaaat aaaaaaaaaa aaaaaaa