Sequence of DPV Cardamom mosaic virus

Cardamom mosaic virus isolate Anemahal polyprotein gene, partial cds.

ACC No: AY833735

Dated: 2005-04-01 | Length: 1819 | CRC: -2127655646

                !!NA_SEQUENCE 1.0
ID   AY833735   standard; genomic RNA; VRL; 1819 BP.
XX
AC   AY833735;
XX
SV   AY833735.1
XX
DT   01-APR-2005 (Rel. 83, Created)
DT   01-APR-2005 (Rel. 83, Last updated, Version 1)
XX
DE   Cardamom mosaic virus isolate Anemahal polyprotein gene, partial cds.
XX
KW   .
XX
OS   Cardamom mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Macluravirus.
XX
RN   [1]
RP   1-1819
RA   Smitha R., Krishna Reddy M.;
RT   "Genetic diversity of Cardamom mosaic virus infecting cardamom";
RL   Unpublished.
XX
RN   [2]
RP   1-1819
RA   Smitha R., Krishna Reddy M.;
RT   ;
RL   Submitted (19-NOV-2004) to the EMBL/GenBank/DDBJ databases.
RL   Division of Plant Pathology, Indian Institute of Horticultural Research,
RL   Hessaraghatta Lake PO, Bangalore, Karnataka 560089, India
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1819
FT                   /country="India:Anemahal, Sakaleshpur"
FT                   /db_xref="taxon:104637"
FT                   /mol_type="genomic RNA"
FT                   /note="biotype: severe mosaic"
FT                   /organism="Cardamom mosaic virus"
FT                   /isolate="Anemahal"
FT                   /isolation_source="infected cardamom leaves"
FT                   /specific_host="cardamom"
FT   CDS             <1. .1587
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="AAX31144.1"
FT                   /translation="GNNSGQPSTVVDSTLILMMSFYYAYIMKTQDFNCECLKDCMRFVC
FT                   NGDDNKFSLAPNFVKKYGGEFTTEIKQLGLTYEFDDLTEDITENPYMSLTMVRTCSGIG
FT                   FSLHPSRVVAIVQWIKKGDIIQATQAAFAAMVEAYNDPWLFSILHLYLVWLIIEYKDAL
FT                   NFARVNGIFGVVYMDPCQVHALHYGIPTANELKEDEDYDDDSDEDLEIVEFCSQQFQMD
FT                   LVGTPTAPRQGSTIASASTSGTTGVTPPGGSGTRAAPLAPMTGQQRAESSPQPVESFDA
FT                   QQQDFAPSGGDDDTDIQWRIPPTPRRLSHFNNPRVKGKRIWNRKIINSIAKEQFTQSSQ
FT                   LATTLQFERWAEDVRKSLGTPNEDDFQIYLTSWCLWCANNGTSSEVDVNQTMEIHSGGK
FT                   YSTVPIAIFVEPAVQNGGLRKIMRHLSDITSQILAKGGKMTAWGTKRGYTQLAMIPYAF
FT                   DFCVQTNGMPKTVREQLNQGKAAAIGSGYQRVMLLDGKVQRSKTSYERHVDTDVDEFEH
FT                   GSMGEPQATLY"
FT   mat_peptide     1. .660
FT                   /note="nuclear inclusion body protein"
FT                   /product="NIb"
FT   mat_peptide     661. .1584
FT                   /note="capsid protein"
FT                   /product="coat protein"
FT   3'UTR           1588. .1806
XX
SQ   Sequence 1819 BP; 572 A; 348 C; 418 G; 481 T; 0 other;

 AY833735  Length: 1819  April 11, 2005 10:46  Type: N  Check: 9354  ..

       1  ggcaataata gtggtcagcc aagcacagtc gttgacagca cgttgatctt
      51  gatgatgtca ttttattacg cttacattat gaagacacaa gattttaatt
     101  gtgagtgttt aaaagattgc atgcggtttg tttgtaatgg ggatgacaac
     151  aaattctcac tggctccaaa ttttgttaag aaatatggag gagaattcac
     201  aactgagatc aaacaacttg gtttaacata tgaatttgat gatctcacag
     251  aggatataac agagaaccct tacatgagtt tgacaatggt ccggacatgt
     301  agtggcatcg gtttttcttt acatccttct agagttgttg ccattgttca
     351  gtggataaag aaaggagaca taattcaagc aacacaagca gcatttgcag
     401  caatggtgga agcatataac gacccatggt tgtttagtat tctgcatctt
     451  tatttagttt ggttgattat tgaatataaa gatgctttaa attttgccag
     501  ggtcaatggc atttttggtg ttgtgtacat ggatccatgc caagttcacg
     551  cattgcacta tggtattcca acagcaaatg agcttaaaga ggacgaggat
     601  tacgacgatg acagtgatga agaccttgaa attgtagagt tttgttccca
     651  gcaatttcag atggatctgg ttggaacacc aacagctcca agacaaggta
     701  gcacaatagc atcagcaagt acatctggca cgactggtgt caccccacct
     751  ggtggtagtg gaacacgcgc agcaccgctt gcaccaatga caggccagca
     801  acgtgcggaa agctcgccgc aaccggttga gagctttgat gctcagcaac
     851  aagattttgc acccagcggc ggtgatgacg acacggacat tcagtggaga
     901  atacccccaa caccaaggag gttgagtcac ttcaacaacc cacgcgtgaa
     951  aggtaaaagg atttggaaca gaaagataat caacagcatt gcaaaggaac
    1001  agttcacaca atcatcacaa ttagcaacaa ctttgcagtt tgagagatgg
    1051  gctgaagatg ttaggaagag tcttggcaca ccaaatgaag atgactttca
    1101  gatctattta acatcatggt gtttgtggtg tgctaacaac ggaacctctt
    1151  cagaagttga cgtcaatcaa accatggaaa ttcactcagg tgggaagtac
    1201  tccacagtac caatcgccat ctttgttgaa ccagcagtgc aaaacggagg
    1251  gcttcggaaa attatgagac atctcagtga tattacatca caaatactag
    1301  ccaaaggagg aaaaatgacg gcatggggaa caaagagagg ttacacacag
    1351  cttgcaatga taccatacgc ttttgatttt tgcgttcaaa cgaatgggat
    1401  gcccaaaaca gtgcgcgagc aattaaatca aggaaaagct gctgcaattg
    1451  gttcaggtta ccagcgagtg atgctactag acgggaaagt tcagcgaagc
    1501  aagacgagtt atgagaggca tgtcgacact gatgtcgatg aatttgaaca
    1551  tggctcaatg ggtgagccac aagcaactct atattgaaca tatcagtatg
    1601  tcaatttagt gtgtttacta atatgcactt atcttatata attagatgtt
    1651  ttcttttctt gttcgctgtg tccataggtt caatgggagt ttttgtgggt
    1701  tttcttccaa cgcctagtaa ccctcaacac agcatcctaa ggttgttctg
    1751  gaggaacacc tggcaacgca cttgcgtagt ttatcctatt accatagaag
    1801  gttagaaaaa aaaaaaaaa