Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate PRSV-AP Ra polyprotein gene, partial cds.

ACC No: AY839863

Dated: 2005-04-17 | Length: 1691 | CRC: -353806356

                !!NA_SEQUENCE 1.0
ID   AY839863   standard; genomic RNA; VRL; 1691 BP.
XX
AC   AY839863;
XX
SV   AY839863.1
XX
DT   01-MAR-2005 (Rel. 83, Created)
DT   17-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Papaya ringspot virus isolate PRSV-AP Ra polyprotein gene, partial cds.
XX
KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1691
RA   Sreenivasulu M., Sai Gopal D.V.R.;
RT   "Sequence diversity in 3' terminal region of Papaya ringspot virus isolates
RT   from south India";
RL   Unpublished.
XX
RN   [2]
RP   1-1691
RA   Sreenivasulu M., Sai Gopal D.V.R.;
RT   ;
RL   Submitted (26-NOV-2004) to the EMBL/GenBank/DDBJ databases.
RL   Department of Virology, S.V. University, Tirupati, Andhra Pradesh 517502,
RL   India
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1691
FT                   /country="India"
FT                   /db_xref="taxon:12205"
FT                   /mol_type="genomic RNA"
FT                   /organism="Papaya ringspot virus"
FT                   /isolate="PRSV-AP Ra"
FT                   /specific_host="Carica papaya"
FT   CDS             <1. .1485
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q5D7Q7"
FT                   /product="polyprotein"
FT                   /protein_id="AAX07287.1"
FT                   /translation="ITMYYALREGGYDTKAQEDMCVFYINGDDLCIAIHPDHEHILDSF
FT                   SSSFAELGLKYDFTQRHRNKQDLWFMSHRGILIDNIYIPKLEPERIVAILEWDKSKQPE
FT                   HRLEAITAAMIESWGYGELTHQIRRFYQWVLEQAPFNELARQGRAPYVSEVGLRRLYTS
FT                   ERGSMEELEAYIDKSFDRERGDAPELLVFHESKSLDDHQFICHVNEHVYHQSKTEAVDA
FT                   GLNDKLKEKEKEKEKKDKKDASDGGYVSTSTKTGERDRDVNAGTSGTFTVPRIKSFTDK
FT                   MILPRIKGKAVLNLNHLLQYNPQQIDISNTRATQSQFEKWYEGVRNDYGLSDDEMQVML
FT                   NGLMVWCIENGTSPDISGVWVMMDGETQVDYPIKPLVEHATPSFRQIMAHFSNAAEAYI
FT                   AKRNATERYMPRYGIKRNLTDISLARYAFDFYEVNSKTPDRAREAHMQMKAAALRNTNR
FT                   RMFGMDGNVSNKEENTERHTVEDVNRDMHSLLGMRN"
FT   mat_peptide     <1. .582
FT                   /product="nuclear inclusion protein b"
FT   mat_peptide     583. .1482
FT                   /product="capsid protein"
FT   3'UTR           1486. .1691
XX
SQ   Sequence 1691 BP; 525 A; 314 C; 403 G; 449 T; 0 other;

 AY839863  Length: 1691  April 26, 2005 08:32  Type: N  Check: 6156  ..

       1  atcacaatgt attacgcact gcgggagggt ggttacgata caaaggctca
      51  agaagacatg tgtgtgtttt atatcaatgg tgatgatctc tgtatcgcca
     101  ttcacccaga tcacgagcat attcttgatt cattctctag ttcatttgct
     151  gagcttgggc ttaagtatga tttcacacaa agacatagga ataaacagga
     201  tctgtggttc atgtcgcatc gaggtattct gatcgacaat atttacattc
     251  cgaaactcga acctgagcga attgttgcaa ttcttgagtg ggacaaatcc
     301  aagcaaccag aacatcgctt ggaggcgatc acagcagcaa tgatagaatc
     351  atggggttat ggtgagctaa cacaccagat ccgcagattc taccaatggg
     401  tccttgagca agctccattc aatgagttag ctagacaagg gagagcccct
     451  tatgtctcag aagttgggtt gagaaggctt tatactagtg agcgtgggtc
     501  gatggaagaa ttggaagcat atattgataa atccttcgat cgggagcgtg
     551  gagatgctcc tgagctattg gttttccatg aatcaaaaag tttagatgat
     601  catcaattta tctgtcacgt gaatgaacat gtttatcatc aatccaagac
     651  tgaagcggtg gatgcaggtc tcaatgataa gctgaaggag aaggaaaaag
     701  aaaaagaaaa gaaagacaag aaagatgcta gtgacggagg ttatgtgtca
     751  actagcacaa aaactggaga gagagataga gatgtcaatg ctggaactag
     801  tggtacattc acagttccaa gaatcaaatc atttactgat aaaatgattc
     851  tacccagaat taaggggaaa gctgtcctta atttgaatca tcttcttcag
     901  tataacccac agcaaattga catctcaaac acccgtgcca cacaatcaca
     951  gtttgaaaag tggtatgagg gagtgaggaa tgattatggc cttagtgatg
    1001  atgaaatgca agtgatgtta aatggcttaa tggtttggtg tatcgaaaat
    1051  ggtacatccc cagacatatc tggtgtctgg gtcatgatgg atggtgagac
    1101  tcaggtcgat tacccaatta aaccattagt tgaacatgca actccttcat
    1151  ttaggcaaat catggctcac ttcagtaacg cggcggaagc atatatcgcg
    1201  aagcgaaatg caactgagag atacatgccg cggtatggaa tcaagagaaa
    1251  tttgactgac attagcctcg ctagatatgc tttcgatttc tatgaggtga
    1301  attcaaaaac acctgataga gctcgagagg ctcatatgca gatgaaggca
    1351  gctgcactgc ggaacacaaa tcgcagaatg tttggaatgg acggcaatgt
    1401  cagtaacaag gaagaaaaca cggagagaca cacagtagaa gatgtcaata
    1451  gagacatgca ctctctcctg ggtatgcgca actaaatatc cgtacttgtg
    1501  tgtttgtcgg gcctggctcg accctgtttc accttataat actatataag
    1551  caatagaata tagtgtggtt ttatcaccgt ttctatttta tagtgagggt
    1601  agccctccat gcttttagta ttattcgagt tctctgagtc tccatacagt
    1651  gtgggtggcc cacgtgctat tcgagcctct tagaatgaga g