Sequence of DPV Papaya ringspot virus

Papaya ringspot virus P isolate IBP_SDo coat protein mRNA, partial cds.

ACC No: AY841757

Dated: 2005-06-09 | Length: 858 | CRC: -2093704825

                !!NA_SEQUENCE 1.0
ID   AY841757   standard; mRNA; VRL; 858 BP.
XX
AC   AY841757;
XX
SV   AY841757.3
XX
DT   26-DEC-2004 (Rel. 82, Created)
DT   09-JUN-2005 (Rel. 84, Last updated, Version 3)
XX
DE   Papaya ringspot virus P isolate IBP_SDo coat protein mRNA, partial cds.
XX
KW   .
XX
OS   Papaya ringspot virus P
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-858
RA   Portal O., Pichardo T., Gomez R., Jimenez E.;
RT   "Cloning and characterization of the coat protein of a Cuban isolate of the
RT   papaya ringspot virus";
RL   Unpublished.
XX
RN   [2]
RP   1-858
RA   Portal O., Pichardo T., Gomez R., Jimenez E.;
RT   ;
RL   Submitted (29-NOV-2004) to the EMBL/GenBank/DDBJ databases.
RL   Molecular Biology, Institute of Plants Biotechnology, Carrtera a Camajuani
RL   Km 5.5, Santa Clara, Villa Clara 50100, Cuba
XX
RN   [3]
RC   Sequence update by submitter
RP   1-858
RA   Portal O., Pichardo T., Gomez R., Jimenez E.;
RT   ;
RL   Submitted (08-JUN-2005) to the EMBL/GenBank/DDBJ databases.
RL   Molecular Biology, Institute of Plants Biotechnology, Carrtera a Camajuani
RL   Km 5.5, Santa Clara, Villa Clara 50100, Cuba
XX
CC   On Jun 8, 2005 this sequence version replaced gi:67043556.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .858
FT                   /country="Cuba:Santo Domingo"
FT                   /db_xref="taxon:12206"
FT                   /mol_type="mRNA"
FT                   /organism="Papaya ringspot virus P"
FT                   /strain="P"
FT                   /isolate="IBP_SDo"
FT   CDS             <1. .858
FT                   /codon_start=1
FT                   /db_xref="GOA:Q5MB25"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProt/TrEMBL:Q5MB25"
FT                   /product="coat protein"
FT                   /protein_id="AAW24440.3"
FT                   /translation="SKNEAVDAGLNEKLKEKEKQKEKEKQKEKEKDDVSDGNGESTSTK
FT                   IGERDRDVNIGTSGTFTVPRIKPFTDKMILPRIKGKTVLNLNHLLQYNPKQIDISNTRA
FT                   TQSQFEKWYEGVRNDYGLNDNEMHVMLNGLMVWCIENGTSPDISGVWVMMDGETQVDYP
FT                   IKPLIEHATPSFRQVMAHFSNAAEAYIAKRNATERYMPRYGMKRNLTDISLARYAFDFY
FT                   EVNSKTPDRAREAHMQMKAAALRNTSRRMFGIDGSVSNKEENTERHTVEDVNRDMHSLL
FT                   GMRN"
XX
SQ   Sequence 858 BP; 297 A; 142 C; 212 G; 207 T; 0 other;

  AY841757  Length: 858  June 21, 2005 08:54  Type: N  Check: 1391  ..

       1  tccaagaatg aagctgtgga cgctggtttg aatgagaagc tcaaagaaaa
      51  agaaaaacag aaagaaaaag aaaaacaaaa agagaaagaa aaagatgatg
     101  ttagtgacgg aaatggtgag tcaactagca caaaaattgg agagagagat
     151  agggatgtca atattgggac cagtggaact ttcactgttc cgaggattaa
     201  accatttact gataagatga ttttaccgag aattaaggga aagactgtcc
     251  ttaacttaaa tcatcttctt cagtataatc cgaaacaaat tgacatttct
     301  aacactcgtg ccactcagtc acaatttgag aagtggtatg agggagtgag
     351  gaatgattat ggccttaatg ataatgaaat gcacgtgatg ctaaatggct
     401  tgatggtttg gtgtatcgaa aatggtacat ctccagacat atctggtgtc
     451  tgggttatga tggatgggga aacccaagtt gattatccaa tcaagccttt
     501  aattgagcat gctactccgt catttaggca agttatggct cactttagta
     551  acgcggcaga agcatacatt gcaaagagaa atgctactga gaggtacatg
     601  ccgcggtatg gaatgaagag aaatttgact gacattagcc tcgctagata
     651  tgctttcgat ttctatgagg tgaattcaaa aacacctgat agggctcgcg
     701  aagctcacat gcagatgaaa gctgcggcgc tgcgaaacac tagtcgcaga
     751  atgtttggca tagacggcag tgttagtaac aaggaagaaa acacggagag
     801  acacacagtg gaagatgtca atagagacat gcactctctc ctgggtatgc
     851  gcaactga