Sequence of DPV Leek yellow stripe virus
Leek yellow stripe virus isolate pLYSVg2 polyprotein gene, partial cds.
ACC No: AY842136
Dated: 2005-04-17 | Length: 2099 | CRC: -715640289
!!NA_SEQUENCE 1.0
ID AY842136 standard; genomic RNA; VRL; 2099 BP.
XX
AC AY842136;
XX
SV AY842136.1
XX
DT 27-DEC-2004 (Rel. 82, Created)
DT 17-APR-2005 (Rel. 83, Last updated, Version 3)
XX
DE Leek yellow stripe virus isolate pLYSVg2 polyprotein gene, partial cds.
XX
KW .
XX
OS Leek yellow stripe virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-2099
RA Wei T., Pearson M.;
RT "Molecular confirmation of Garlic yellow streak virus as Leek yellow stripe
RT virus";
RL Unpublished.
XX
RN [2]
RP 1-2099
RA Wei T., Pearson M.;
RT ;
RL Submitted (29-NOV-2004) to the EMBL/GenBank/DDBJ databases.
RL School of Biological Sciences, The University of Auckland, Private Bag
RL 92019, Auckland, New Zealand
XX
FH Key Location/Qualifiers
FH
FT source 1. .2099
FT /country="New Zealand"
FT /db_xref="taxon:42004"
FT /mol_type="genomic RNA"
FT /organism="Leek yellow stripe virus"
FT /isolate="pLYSVg2"
FT /specific_host="Garlic plant"
FT /strain="Garlic yellow streak virus"
FT CDS <1. .1488
FT /codon_start=1
FT /db_xref="GOA:Q5MAU4"
FT /db_xref="InterPro:IPR001592"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProt/TrEMBL:Q5MAU4"
FT /note="contains NIb and coat protein"
FT /product="polyprotein"
FT /protein_id="AAW29098.1"
FT /translation="NNSGQPSTVVDNSLMVVFSMYYAMEMSNVSSIHDKCVFFVNGDDL
FT IIAVEPGSETFLDSLQNLFHQLGLNYNFDNRTRNKEELCFMSHMGILQEDIYIPKLDKE
FT RIVSILEWDRAQQPEHRLEALCAAMIEAWGYPELLDRIRKFYYWVLEQAPYNELSALGK
FT APFISEAALRNLYTDCEATEAELARYLELYDSDTPVEDTFVFQANDELDAGMQTSKKQK
FT DGNDKSIEQRDPTSSQVSSLGKKDGEGSSGTSRNKDRDVNIGTTGTFSVPRIKQIPQKG
FT ISIPMDGGKSILNLDHLLQYKPNQLNISNTRATVAQFKTWMERVQEDYGVTKGEMGIIL
FT NGLMVWCIENGTSPNINGTWTMMDGDEQVAYPLRSIVEHAKPTLRQIMAHFSALAEAYI
FT EMRNSEQAYMPRYGLQRNLTDMGLARYAFDFYEVTSRTPVRAREAHARMKAAALRNSRP
FT RLFGLDGNVTTTDEDTERHTAHDVNARMHHLDGAHMQ"
FT mat_peptide <1. .618
FT /product="polymerase"
FT mat_peptide 619. .1485
FT /product="coat protein"
FT 3'UTR 1489. .2099
XX
SQ Sequence 2099 BP; 668 A; 400 C; 492 G; 539 T; 0 other;
AY842136 Length: 2099 April 26, 2005 08:32 Type: N Check: 847 ..
1 aataatagtg ggcagccatc cacagttgtt gacaattcat taatggtcgt
51 cttttcaatg tactatgcaa tggaaatgag caacgttagt agcatccacg
101 ataaatgtgt tttcttcgtg aacggtgatg atttaattat agcagttgaa
151 ccaggctctg aaacattcct tgatagcttg caaaatctct tccatcaact
201 tggcttaaat tacaactttg acaatcgaac gcgcaataag gaagagttgt
251 gtttcatgtc acacatgggt attttacaag aagacatata tataccaaaa
301 ctggataagg agcgcatagt gtcaatattg gagtgggatc gcgctcagca
351 gcctgagcat agattggaag ctctatgcgc agccatgatt gaagcttggg
401 gatatccgga attgctagat cgaatccgaa agttctatta ttgggttctt
451 gaacaagcac cgtataatga gttgagtgca ttaggtaaag cgccatttat
501 ctctgaagca gccctgcgga atttatacac cgattgtgag gcaacggaag
551 cggagttagc acgatatctc gaactgtacg acagcgatac acctgtagaa
601 gacacatttg tgttccaagc taatgatgaa ttagatgcag gcatgcaaac
651 aagtaagaaa cagaaggatg gtaatgataa atctattgaa caacgcgatc
701 caacatcatc acaagttagt tcactaggca agaaagacgg tgaaggcagt
751 tcaggaacga gtagaaacaa agacagggat gtgaacattg gcacaacagg
801 gacttttagt gttccacgaa tcaaacagat accacagaaa ggtatttcga
851 taccaatgga cggaggaaag tcaatactca acttagatca cttactacag
901 tataaaccaa atcaattgaa tatatcgaac acaagagcca cagtggcaca
951 atttaaaacc tggatggaga gagtgcaaga ggattacggt gtcactaaag
1001 gtgaaatggg cataattctg aatggtttga tggtgtggtg catcgaaaat
1051 ggaacctcac caaatataaa tgggacttgg actatgatgg atggcgatga
1101 gcaagtcgcg taccctttac ggtcgatcgt tgaacatgcg aaaccaacct
1151 tacggcaaat aatggcgcat ttttcagcac tcgcggaggc gtacattgaa
1201 atgagaaatt cagagcaggc ttatatgcca agatatgggc tacaaagaaa
1251 tcttacagac atgggcctcg cacgatatgc atttgatttt tatgaagtca
1301 catcaagaac accagttaga gcgcgcgagg ctcacgcacg aatgaaagca
1351 gcggccctac gtaattcaag gccaaggctg tttggactag acggtaacgt
1401 cacaaccacg gatgaggaca cggagaggca cacagcacat gacgtgaatg
1451 cacggatgca ccatcttgat ggtgcgcata tgcagtgatg tttcggttag
1501 taaccggtta tgggcttcca tttaaaaagt cccgagtgcc aaacttgtat
1551 tttggctagt gtagtgaaac tatgattcac tcgttcaagg cagtttctac
1601 tctaaggatg acttgggaat tagtagctcc caatgccggt cacggtggtg
1651 gccaccaaga gtcaacactt ggtttgaagt tgattgtctg aagatctatc
1701 cggagtacgg ttttgtaaag aaggtggatt caatttttaa ggatagtaag
1751 tctgaagcct tattggtgta taagcagcct gaattctgat accccacctt
1801 taccctacaa tggagtgcta ctttaaagac tagctaggat tgagaccgaa
1851 atctcacata ctggcatggc cagtagttga tcacttaatg atcaggtgac
1901 tactttacag tcaagttgga acccgtagta tcctatcctt acctaatatc
1951 gtaagtttta tttactggtg tagcgtggtt caaccacctt ataaacactt
2001 tgaatattag gatcgagctg ttcgtctgaa ggcactaaga gtggtttgac
2051 catgcgtgcg ttcttacgtt gcagtaaaaa aaaaaaaaaa aaaaaaaaa