Sequence of DPV Tomato spotted wilt virus

Tomato spotted wilt virus isolate 13601-potato nucleocapsid protein (NP) gene, complete cds.

ACC No: AY856342

Dated: 2009-11-02 | Length: 777 | CRC: -916445895

                
ID   AY856342; SV 1; linear; genomic RNA; STD; VRL; 777 BP.
XX
AC   AY856342;
XX
DT   18-JAN-2005 (Rel. 82, Created)
DT   02-NOV-2009 (Rel. 102, Last updated, Version 3)
XX
DE   Tomato spotted wilt virus isolate 13601-potato nucleocapsid protein (NP)
DE   gene, complete cds.
XX
KW   .
XX
OS   Tomato spotted wilt virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
XX
RN   [1]
RP   1-777
RX   AGRICOLA; IND43733402.
RX   DOI; 10.1007/BF02853592.
RA   Abad J.A., Moyer J.W., Kennedy G.G., Holmes G.A., Cubeta M.A.;
RT   "Tomato spotted wilt virus on potato in eastern North Carolina";
RL   Am. J. Potato Res. 82(3):255-261(2005).
XX
RN   [2]
RP   1-777
RA   Abad J.A., Moyer J.W.;
RT   ;
RL   Submitted (14-DEC-2004) to the EMBL/GenBank/DDBJ databases.
RL   Plant Pathology, North Carolina State University, 2610 Gardner Hall, NCSU
RL   Campus, Raleigh, NC 27695, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .777
FT                   /organism="Tomato spotted wilt virus"
FT                   /host="Solanum tuberosum L."
FT                   /isolate="13601-potato"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /db_xref="taxon:11613"
FT   gene            1. .777
FT                   /gene="NP"
FT   CDS             1. .777
FT                   /codon_start=1
FT                   /gene="NP"
FT                   /product="nucleocapsid protein"
FT                   /note="capsid protein; N-protein"
FT                   /db_xref="GOA:Q5I4D0"
FT                   /db_xref="InterPro:IPR002517"
FT                   /db_xref="UniProtKB/TrEMBL:Q5I4D0"
FT                   /protein_id="AAW52711.1"
FT                   /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLGNLDQI
FT                   KKMSIISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL
FT                   VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS
FT                   VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMTEDQVKKGKEYAAILSSS
FT                   NPNAKGSVAMEHYSETLNKFYEMFGVKKQAKLAELA"
XX
SQ   Sequence 777 BP; 254 A; 132 C; 174 G; 217 T; 0 other;

ay856342 Length: 777  02-NOV-2009  Type: N  Check: 1191  ..

       1  atgtctaagg ttaagctcac taaggaaagc attgttgctt tgttgacaca
      51  aggcaaagac cttgagtttg aggaagatca gaatctggta gcattcaact
     101  tcaagacttt ttgtctagga aaccttgacc agatcaaaaa gatgagcatt
     151  atttcatgtc tgacattcct gaagaatcgt cagagcataa tgaaggttat
     201  taagcaaagt gattttactt ttggtaaaat taccataaag aaaacttcag
     251  acaggattgg agccactgac atgaccttca gaaggcttga tagcttgatc
     301  agggtcaggc ttgttgagga aactgggaat tctgagaatc tcaatactat
     351  caaatctaag attgcttccc accctttgat tcaagcctat ggattacctc
     401  ttgatgatgc aaagtctgtg aggcttgcca taatgctagg aggtagctta
     451  cctcttattg cttcagttga tagctttgag atgatcagtg ttgtcttggc
     501  tatatatcag gatgcaaaat acaaagacct cgggattgac ccaaagaaat
     551  atgacaccag ggaagcctta gggaaagttt gcactgtgct gaaaagcaaa
     601  gcatttgaaa tgactgaaga tcaggtgaag aaggggaaag agtatgctgc
     651  tatacttagt tccagcaatc ctaatgctaa aggaagtgtt gctatggaac
     701  attacagtga aactcttaac aagttctatg aaatgtttgg ggttaaaaaa
     751  caggcaaaac tcgcagaact tgcttaa