Sequence of DPV Tomato spotted wilt virus
Tomato spotted wilt virus isolate T segment M, complete sequence.
ACC No: AY870389
Dated: 2008-03-01 | Length: 4774 | CRC: 736121845
ID AY870389; SV 1; linear; genomic RNA; STD; VRL; 4774 BP.
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AC AY870389;
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DT 01-JAN-2006 (Rel. 86, Created)
DT 01-MAR-2008 (Rel. 95, Last updated, Version 2)
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DE Tomato spotted wilt virus isolate T segment M, complete sequence.
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KW .
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OS Tomato spotted wilt virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN [1]
RP 1-4774
RA Naidu R.A., Sherwood J.L., Deom C.M.;
RT "Characterization of a vector-non-transmissible isolate of Tomato spotted
RT wilt virus";
RL Plant Pathol. 57(1):190-200(2008).
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RN [2]
RP 1-4774
RA Naidu R.A., Sherwood J.L., Deom C.M.;
RT ;
RL Submitted (29-DEC-2004) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, University of Georgia, 3409 Miller Plant Science Building,
RL Athens, GA 30602, USA
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FH Key Location/Qualifiers
FH
FT source 1. .4774
FT /organism="Tomato spotted wilt virus"
FT /segment="M"
FT /lab_host="Emilia sonchifolia"
FT /isolate="T"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /db_xref="taxon:11613"
FT CDS 101. .1009
FT /codon_start=1
FT /product="NSm"
FT /note="non-structural protein"
FT /db_xref="InterPro:IPR006889"
FT /db_xref="UniProtKB/TrEMBL:Q2TI71"
FT /protein_id="AAX62143.1"
FT /translation="MLTLFGNKGSSKSARKDEGPLVSLAKHNGNVEVSKPWSSSDEKLA
FT LTKAMDTSKGKILLNTEGTSSFGTYESDSITESEGHDLSARMIVDTNHHISNWKNDLFV
FT GNGKQNANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKPVVALVDPNMPSEKQV
FT ILKGQGTIIDPICFVFYLNWSIPKMNNTPENCCQLHLMCSQEYKKGVSFGSIMYSWTKE
FT FCDSPRADKDKSCMVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSLNLER
FT SVEEEEEGISDSVAQLSFDEI"
FT CDS complement(1283. .4690)
FT /codon_start=1
FT /product="glycoprotein precursor"
FT /note="G1-G2"
FT /db_xref="InterPro:IPR014414"
FT /db_xref="UniProtKB/TrEMBL:Q2TI70"
FT /protein_id="AAX62144.1"
FT /translation="MRILKLLELVVKVSLFTIALSSVLLAFLTFRATDAKVEIIRGDHP
FT EVYDDSAENEVPTAASIQRKAILETLTNLMLESQTPGTRQIREEESTIPISAESTTQKT
FT ISVLDLPNNCLNASSLKCEIKGISTFNVYYQVENNGVIYSCVSDSAEGLEKCDNSLNLP
FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG
FT DCKITKSNFANPYTVSITSPEKIMGYLVKKPGENAEHKVISFSGSASITFTEEMLDGEH
FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN
FT KTTKPLFLWYDHIGLITYPILLLINCLWKYFPLKCSNCGNLCIITHECTKICICNKSKA
FT SKEHSSECPILSKEADHDYNKHKWTSMEWFHLIVNTKLSFSLLKFVTEILIGMIILSQM
FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPEKDQCYCNVKEDKIIESIFGTNIVIEG
FT PNDCIENQNCAADPSIDNLIKCRLGCEYLDLFRNKPLYNGFSDYTGSSLGLTSVGLYEA
FT KRLRNGIIDSYNRTDKISGMIAGDSLNKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ
FT SLLGGGGTIFMLNDKTSETAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN
FT CNTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL
FT KSTIVADVCISGILGGLCSRITEEVPYENALFQADIQADLHNDGITIGELIAHGPDSHI
FT YSGNIANLNDPVKMFGHPQLTHDGAPIFTKKTLEGDDMSRDCAAIGKKSITIKTCGYDT
FT YRFRSGLEQISDIPVSFKDFSSFFLEKAFSLGKLKIVVDLPSDLFKVAPKRPSITSTSL
FT NCNGCLLCGQGLSCVLEFFSDLTFSTAISVDACSLSTYQLAVKKGSNKYNITMFCSANP
FT DKKKMTLYPEGNPDISVEVLVNNVVVEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI
FT KSPFNFIASYFGSFFDTIRVILLIAFIFLVIYLCSILTTICKGYVKNGSYKSRPKVEDD
FT DDSEINAPMLMKDTMTRRRPPMDFSHLV"
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SQ Sequence 4774 BP; 1518 A; 857 C; 858 G; 1541 T; 0 other;
ay870389 Length: 4774 01-MAR-2008 Type: N Check: 3531 ..
1 agagcaatca gtgcatcaga aatataccta ttatacactt tgctaagaat
51 caatcaatta cattacacaa gctcctctac cttaggctgt tgaactcaaa
101 atgttgactc ttttcggtaa caaggggtct tctaagtctg ccagaaagga
151 tgaaggtcct ttagtttcac ttgctaaaca taatggtaat gttgaagtct
201 ctaagccatg gtcttcttct gatgaaaagc ttgccttgac taaagctatg
251 gatacatcca aaggaaagat actgttgaac acagagggaa catcttcctt
301 tggaacctat gaatctgatt ctatcacaga atcagagggt cacgaccttt
351 ctgcaagaat gatagtagat acaaaccatc atatctcaaa ctggaaaaat
401 gatctttttg ttggcaacgg gaagcaaaac gcaaataagg tcatcaagat
451 ctgtccaact tgggacagca gaaaacaata catgatgatt tccaggattg
501 tgatatgggt ctgccccact ataccaaacc ctacaggaaa acctgtggtt
551 gccctggttg atcccaacat gccgtctgaa aagcaagtca ttctgaaggg
601 tcaggggaca ataattgatc ctatatgttt tgtcttttat ctgaactggt
651 ctattccgaa aatgaataac actccagaaa actgctgtca gctgcatttg
701 atgtgcagcc aagaatacaa gaagggggtt tcttttggta gtatcatgta
751 ttcttggaca aaggagtttt gtgattcacc cagagctgat aaagataaaa
801 gttgcatggt catacctcta aacagagcta ttagagctag atctcaagca
851 ttcattgagg cttgcaagct gataatccct aaaggaaaca gtgaaaagca
901 gattaaaaaa cagcttaaag aattgagctt aaatcttgag agatcagttg
951 aagaagaaga ggaagggatt tctgatagtg ttgctcagtt atcttttgat
1001 gaaatatagt acttttaatg tcacttattt aagcttaaat ttctgttaat
1051 tttgcattta aatcaaaaac caaaacaaaa aacaagaaga aaaaacaaaa
1101 aatcaaaaac aaaaaacaaa aacaaaataa ggctgaaaag ccaaactttg
1151 gtccgaagac tctttttgtt gttttttgtt tatttgtata tatatttttt
1201 tgtttgtttt ttatttattt tatacatgca taatctgact aatgtagaag
1251 attgaatcaa attcagcctg taacaagcag actcagacaa ggtgagagaa
1301 atccataggt ggccttcgtc ttgtcattgt atctttcatt aacatagggg
1351 cgttgatttc agaatcatca tcatcctcta ccttgggtct agatttataa
1401 gatccatttt tgacatatcc tttacaaatg gttgttagaa tagaacataa
1451 ataaatcaca aggaaaatga atgcaataag cagtatcact ctgatagtat
1501 caaaaaatga gccgaaataa cttgcaatga aattaaatgg gcttttaata
1551 taatcccaga agccccatgc tgaagaatca gaattatatt gttgttcttc
1601 atgagcatac tcatcatttt gatctattat gttctctggt tcttctacaa
1651 caacattatt gaccagaact tccacagaaa tgtccggatt gccttctgga
1701 tacaatgtca ttttcttctt gtccggatta gcagaacaaa acattgttat
1751 gttgtattta ttagatcctt ttttaacagc cagttgataa gtagatagag
1801 agcaagcatc tacagaaatt gcagtagaaa atgtcaaatc tgagaaaaat
1851 tccaaaacgc aagataaacc ttgaccgcat agaagacagc cgttgcaatt
1901 taagcttgtt gaagttatag aaggtctctt aggagcaact ttaaaaagat
1951 ctgatggaag atcaacgaca atcttgagtt tccctagact gaaagctttt
2001 tccaagaaaa aactagagaa atctttgaaa ctaacaggaa tatctgatat
2051 ttgctctaaa ccagatctaa atctgtatgt atcatatccg catgttttaa
2101 tagtgattga ttttttccct atcgctgcac aatcccgaga catatcatct
2151 ccttctagag ttttcttagt aaaaataggc gctccatcat gagtcaattg
2201 tgggtgacca aacattttca caggatcatt caagtttgca atattaccag
2251 aataaatatg gctgtcaggt ccatgggcta tcagttcgcc tatagtgata
2301 ccatcattgt gcaaatctgc ttgtatatca gcttgaaaca aggcattttc
2351 ataaggaacc tcttcagtaa tccttgagca cagacctcct aaaataccag
2401 aaatacaaac atctgccact atagttgatt ttagtactga ataaattctg
2451 tatgatttat ccatgtcata gatattccga cagaatccgc atgtagcacc
2501 ttcattgatt gcaaaacacc aagcttcttc acatccccaa taagaagttg
2551 gtgttataca aaaatcttgg aaaccagtta aagcttgatt ttttctgcag
2601 gtgttacagt ttcctgtaca agtggaataa aaatctgtgt gggtgctttg
2651 gataggagct gttgtgtatt tttctgacac ttcataatga attcccacac
2701 ttttgatata aatcacaaat ttttttgctg tttctgaggt tttatcattt
2751 aacatgaata tagtccctcc tcctcctaaa agagattgtt ctatcatgta
2801 tctatatttc ccgtccacaa cagaatcaaa gatcaatgat tgtctaggca
2851 gaatgttctc tggtatgctt gtttcgtttt tgttcagaga atctcctgca
2901 atcattccag aaattttgtc tgtacgatta taagaatcta ttataccatt
2951 cctcaatctc ttagcctcat acagaccaac cgatgttaac cctaaagagc
3001 ttcctgtata atctgaaaac ccattataca aaggtttgtt ccgaaataaa
3051 tctaggtact cgcaacccag tctgcatttt ataagattat caatagacgg
3101 gtctgcagca caattctggt tctctatgca atcatttgga ccttctataa
3151 caatgttagt gccaaagata ctttctataa tcttatcttc tttcacatta
3201 cagtaacatt gatctttttc tgggcatttt tcaaatttgc tagtaaccaa
3251 aaatggacag cctggaacat aaaagcatcc actcaaacat tgggttgttt
3301 gagccataga catgggcatt tgagacaaaa tgatcatacc tattaagatt
3351 tcagttacaa atttcagcaa actaaagctc agcttagtgt tcactattag
3401 gtggaaccac tccatgctag tccacttgtg tttgttgtag tcatgatctg
3451 cttctttgga caatatggga cactctgaag aatgttcttt tgaagctttg
3501 cttttgttgc agatgcaaat tttagtacat tcatgtgtga ttatgcacaa
3551 attgccacag ttagaacatt taagtggaaa atatttccat aagcagttta
3601 tgagcaacaa aatagggtat gtgatcaagc ctatgtgatc ataccagaga
3651 aagagaggtt tggttgtctt gtttactaac caccggatag ggaaatagat
3701 caacaaagct attaatatta atcttatcca agaaaaattg atgcaggctg
3751 tttgtttata aatgcttttt gaatatttga ttatgcaatc tctaactctt
3801 ttgtttgttt ttggtatttt agctgatttg tcaccgcaca agagattgtg
3851 ctcaccatcc aacatttctt cagtaaaagt gatgcttgct gatccagaaa
3901 aggatatgac cttgtgttcc gcattttcac caggcttttt tactaaataa
3951 cccatgatct tttcggggct agtgatgctt acagtatagg gattggcaaa
4001 gttcgattta gttattttgc agtcaccaga taactttaca gtttgtaatg
4051 atactgttcc attagtaggg tacgagttat aggttatagg ataattatct
4101 tgtgtcaggc tttctgaaat gaagaatttt gttccaactg aaaaatgtct
4151 tttgttgtca agtttggtaa tgggaataac cgggactttg gagaatctct
4201 ttggcagatt taaagaattg tcacattttt ctaaaccttc cgctgaatca
4251 gaaacacagg aatatatgac accattattt tccacttgat aataaacatt
4301 aaaagtggat atccctttta tctcacattt taatgaagaa gcattcaagc
4351 agttgttagg aagatccaag acagagattg ttttttgcgt agttgactca
4401 gcagaaatag ggatggttga ttcttcttct cgtatttgac gggttccagg
4451 agtctgagat tctagcatca gattagtcaa agtctccaag atagccttgc
4501 gttgaatcga tgcagcagtg ggtacttcat tctcagcaga atcatcataa
4551 acctcaggat ggtctccacg gattatttct actttggcat ctgtggctct
4601 gaaggtcaag aatgccaaca agacagaact cagggcaatt gtgaaaagac
4651 tcacttttac cactagttct agtagtttta aaattctcat cttagacgtc
4701 tgctcagatt ataatggtta tatgattaat ttcaagatgt ctggattaag
4751 gtttttgttt gcactgattg ctct