Sequence of DPV Tomato spotted wilt virus
Tomato spotted wilt virus isolate M segment S, complete sequence.
ACC No: AY870391
Dated: 2008-03-01 | Length: 3047 | CRC: 1901552229
ID AY870391; SV 1; linear; genomic RNA; STD; VRL; 3047 BP.
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AC AY870391;
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DT 01-JAN-2006 (Rel. 86, Created)
DT 01-MAR-2008 (Rel. 95, Last updated, Version 2)
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DE Tomato spotted wilt virus isolate M segment S, complete sequence.
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KW .
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OS Tomato spotted wilt virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN [1]
RP 1-3047
RA Naidu R.A., Sherwood J.L., Deom C.M.;
RT "Characterization of a vector-non-transmissible isolate of Tomato spotted
RT wilt virus";
RL Plant Pathol. 57(1):190-200(2008).
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RN [2]
RP 1-3047
RA Naidu R.A., Sherwood J.L., Deom C.M.;
RT ;
RL Submitted (29-DEC-2004) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, University of Georgia, 3409 Miller Plant Science Building,
RL Athens, GA 30602, USA
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FH Key Location/Qualifiers
FH
FT source 1. .3047
FT /organism="Tomato spotted wilt virus"
FT /segment="S"
FT /lab_host="Emilia sonchifolia"
FT /isolate="M"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /db_xref="taxon:11613"
FT CDS 89. .1492
FT /codon_start=1
FT /product="NSs"
FT /note="non-structural protein"
FT /db_xref="InterPro:IPR004915"
FT /db_xref="UniProtKB/TrEMBL:Q2TI67"
FT /protein_id="AAX62147.1"
FT /translation="MSSSVYESIIQTRASVWGSTASGKAVVDSYWIHELGTGSQLVQTQ
FT LYSDSRSKSSFGYTAKVGDLPCEEEEILSQHVYIPIFDDIDFSINIDDSVLALSVCSNT
FT VNANGVKHQGHLKVLSPAQLHSIGSIMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLS
FT CVKEHTYKIEMCYNQALGKVNVLSPNRNVHEWLYSFKPNFNQVESNNRTVNSLAVKSLL
FT MLAENNIMPNSQAFVKASTDSNFKLSLWLRVPKVLKQISIRKLFKVAGDETNKTFYLSI
FT ACIPNHNSVETALNITVICKHQLPIRKCKTPFELSMMFSDLKEPYNIIHDPSYPQRIVH
FT ALLETHTSFAQVLCNNLQEDVIIYTLNNHELTPEKLDLGEITLNYKEDAYKRKYFLSKT
FT LECLPSNTQTMSYLDSIQIPSWKIDFARGEIKISPQSISVAKSLLNLDLSGIKKKESKI
FT KEAYASGSK"
FT CDS complement(2118. .2894)
FT /codon_start=1
FT /product="N"
FT /note="nucleocapsid protein"
FT /db_xref="GOA:Q9YIT0"
FT /db_xref="InterPro:IPR002517"
FT /db_xref="UniProtKB/TrEMBL:Q9YIT0"
FT /protein_id="AAX62148.1"
FT /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLGNLDQI
FT KKMSIISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL
FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS
FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMTEDQVKKGKEYAAILSSS
FT NPNAKGSVAMEHYSETLNKFYEMFGVKKQAKLTELA"
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SQ Sequence 3047 BP; 923 A; 551 C; 506 G; 1067 T; 0 other;
ay870391 Length: 3047 01-MAR-2008 Type: N Check: 5367 ..
1 agagcaattg tgtcagaatt ttgttcttaa tcaaacctca cttagaaaat
51 cacaatactg taataagaac acagtaccaa taaccataat gtcttcaagt
101 gtttatgagt cgatcattca gacaagagct tcagtctggg gatcaactgc
151 atctggtaaa gctgttgtag attcttactg gattcatgaa cttggtactg
201 gttctcaact agttcagacc cagctgtatt ctgattcaag aagcaaaagt
251 agctttggct atactgcaaa agtaggggat cttccttgtg aagaagaaga
301 gattctttct cagcatgtgt atatccctat ttttgatgat attgatttta
351 gcatcaatat tgatgactct gttctggcac tatctgtttg ctcaaataca
401 gtcaatgcta acggagtgaa acatcaaggt catttgaagg ttttgtctcc
451 tgctcagctc cactctattg gatctatcat gaacagatct gatattacag
501 accgattcca gctccaagaa aaagacataa ttcccaatga cagatacatt
551 gaagctgcaa acaaaggctc tttgtcttgt gtcaaagagc atacctataa
601 gatcgagatg tgctataatc aagctttagg caaagtgaat gttctatctc
651 ctaacagaaa tgtccatgaa tggctgtaca gtttcaagcc aaatttcaat
701 caagttgaaa gcaacaacag aactgtgaat tctcttgcag tgaaatccct
751 gctcatgtta gcagaaaaca acatcatgcc taactctcaa gcttttgtca
801 aagcttctac tgattctaat ttcaagctga gcctctggct aagggttcca
851 aaggttttga agcagatttc cattcggaaa ttgttcaagg ttgcagggga
901 tgagacaaat aaaacatttt atttatctat tgcctgcata ccaaaccata
951 acagtgttga gacagctttg aacattactg ttatttgcaa gcatcagctc
1001 ccaattcgta aatgtaaaac tccttttgaa ttatcaatga tgttttctga
1051 tttaaaggag ccttacaaca ttattcatga tccttcatat cctcaaagga
1101 ttgttcatgc tctgcttgaa actcacacat cttttgcgca agttctttgc
1151 aacaacttgc aagaagatgt gatcatctac accttgaaca accatgagct
1201 aactcctgaa aagttagatt taggtgaaat aaccttgaat tacaaagaag
1251 acgcctacaa aaggaaatat ttcctttcaa aaacacttga atgtcttcca
1301 tctaacacac aaactatgtc ttacttagac agcatccaaa tcccttcctg
1351 gaagatagac tttgccaggg gagaaattaa aatttctcca caatctattt
1401 cagttgcaaa atctttgtta aatcttgatt taagcgggat taaaaagaaa
1451 gaatctaaga ttaaggaagc atatgcttca ggatcaaaat gatcttgctg
1501 tatcctgctt tttctaatta tgttatgttt gtttctttct ttacttataa
1551 ttatttctct gtttgtcatt tccttcaaac tcctcctgtc tagtagaaac
1601 cataaaaaca agaataaaaa taaaataaaa tcaaaataaa ataaaaatca
1651 aaaaatgaaa taaaaacaac aaaaaattaa aaaacaaaaa accaaaaaag
1701 atcccgaaag ggacaatttt ggccaaattt gaggtttgtt tttgtttgtt
1751 tgtttgtttg tttgtttgtt tgtttgtttg tttgtttgtt tgtttgtttg
1801 tttgtttgtt tgtttgtttg tttgtttgtt tgttttgttt gttttgtttg
1851 tttttttgtt ttttgttttt gtttttgttt ttatttttat tttttatttt
1901 atttttattt ttgttttatt ttattttatt tttgttttta ttttatgttt
1951 ttttgttgtt tttgttattt tgttatttat taagcacaac acacagaaag
2001 caaactttaa ttaaacacac ttatttaaaa tttaacacac taagcaagca
2051 caagcaataa agataaagaa agctttatac atttacaggc tttttataat
2101 ttaacttaca gctgctttca agcaagttct gtgagttttg cctgtttttt
2151 aaccccaaac atttcataga acttgttaag agtttcactg taatgttcca
2201 tagcaacact tcctttagca ttaggattgc tggaactgag tatagcagca
2251 tactctttcc ccttcttcac ctgatcttca gtcatttcaa atgctttgct
2301 tttcagcaca gtgcaaactt tccctaaggc ttctctggtg tcatacttct
2351 ttgggtcgat cccgaggtcc ttgtattttg catcctgata tatagccaag
2401 acaacactga tcatctcaaa gctatcaact gaagcaataa gaggtaagct
2451 acctcctagc attatggcaa gcctcacaga ctttgcatca tcaagaggta
2501 atccataggc ttgaatcaaa gggtgggaag caatcttaga tttgatagta
2551 ttgagattct cagaattccc agtttcctca acaagcctga ccctaatcaa
2601 gctatcaagc cttctgaagg tcatgtcagt ggctccaatc ctgtctgaag
2651 ttttctttat ggtaatttta ccaaaagtaa aatcactttg cttgataacc
2701 ttcattatgc tctgacgatt cttcaggaat gtcagacatg aaataatgct
2751 catctttttg atctggtcaa ggtttcccag acaaaaagtc ttgaagttga
2801 atgctaccag attctgatct tcctcaaact cgaggtcttt gccttgtgtc
2851 aacaaagcga caatgctttc cttagtgagc ttaaccttag acatgatgat
2901 cgtagaagtt gttatatgct ttgaccgtat gtaattcaag gtgcaaaagt
2951 gcaactctgt atgccgcagt cgtttcttag ggttttaatg tgatgatttg
3001 taagactgag tgttaaggtt tgaacacaaa attgacacga ttgctct