Sequence of DPV Tomato spotted wilt virus
Tomato spotted wilt virus isolate T segment S, complete sequence.
ACC No: AY870392
Dated: 2006-01-01 | Length: 3016 | CRC: -506012154
ID AY870392 standard; genomic RNA; VRL; 3016 BP.
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AC AY870392;
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SV AY870392.1
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DT 01-JAN-2006 (Rel. 86, Created)
DT 01-JAN-2006 (Rel. 86, Last updated, Version 1)
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DE Tomato spotted wilt virus isolate T segment S, complete sequence.
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KW .
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OS Tomato spotted wilt virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN [1]
RP 1-3016
RA Naidu R.A., Sherwood J.L., Deom C.M.;
RT "Characterization of vector non-transmissible isolate of Tomato spotted
RT wilt virus";
RL Unpublished.
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RN [2]
RP 1-3016
RA Naidu R.A., Sherwood J.L., Deom C.M.;
RT ;
RL Submitted (29-DEC-2004) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, University of Georgia, 3409 Miller Plant Science Building,
RL Athens, GA 30602, USA
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FH Key Location/Qualifiers
FH
FT source 1. .3016
FT /country="USA"
FT /db_xref="taxon:11613"
FT /mol_type="genomic RNA"
FT /organism="Tomato spotted wilt virus"
FT /isolate="T"
FT /segment="S"
FT /lab_host="Emilia sonchifolia"
FT CDS 89. .1492
FT /codon_start=1
FT /note="non-structural protein"
FT /product="NSs"
FT /protein_id="AAX62149.1"
FT /translation="MSSSVYESIIQTRASVWGSTASGKAVVDSYWIHELGTGSQLVQTQ
FT LYSDSRSKSSFGYTAKVGDLPCEEEEILSQHVYIPIFDDIDFSINIDDSVLALSVCSNT
FT VNANGVKHQGHLKVLSPAQLHSIGSIMSRSDITDRFQLQEKDIIPNDRYIEAANKGSLS
FT CVKEHTYKIEMCYNQALGKVNVLSPNRNVHEWLYSFKPNFNQVESNNRTVNSLAVKSLL
FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRVPKVLKQISIQKLFKVAGDETNKTFYLSI
FT ACIPNHNSVETALNITVICKHQLPIRKCKAPFELSMMFSDLKEPYNIVHDPSYPQRIVH
FT ALLETHTSFAQVLSNNLQEDVIIYTLNNHELTPGKLDLGERTLNYSEDAYKRKYFLSKT
FT LECLPTNTQTMSYLDSIQIPSWKIDFARGEIKISPQSISVAKSLLKLDLSGIKKKESKV
FT KEAYASGSK"
FT CDS complement(2087. .2863)
FT /codon_start=1
FT /note="nucleocapsid protein"
FT /product="N"
FT /protein_id="AAX62150.1"
FT /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFFLENLDQI
FT KKMSIISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL
FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS
FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS
FT NPNAKGSVAMEHYSETLNKFYGMFGVKKQAKLTELA"
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SQ Sequence 3016 BP; 946 A; 565 C; 485 G; 1020 T; 0 other;
ay870392 Length: 3016 01-JAN-2006 Type: N Check: 1827 ..
1 agagcaattg tgtcagaatt ttgttcttaa tcaaacctca cttagaaaat
51 cacaaaactg taataagaac acagtaccaa taaccataat gtcttcaagt
101 gtttatgagt caatcattca gacaagagct tcagtctggg gatcaactgc
151 atctggtaaa gctgttgtag attcttactg gattcatgaa cttggtactg
201 gttctcaact agttcagacc cagctgtatt ctgattcaag aagcaaaagt
251 agctttggct atactgcaaa agtaggggat cttccctgtg aagaagaaga
301 gattctttct cagcatgtgt atatccctat ttttgatgat attgatttta
351 gcatcaatat tgatgactct gttctggcac tatctgtttg ctcaaataca
401 gtcaatgcta acggagtgaa acatcaaggt catttgaagg ttttgtctcc
451 tgctcaactc cattctattg gatctatcat gagcagatct gatattacag
501 accgattcca gctccaagaa aaagacataa ttcccaatga cagatacatt
551 gaagctgcaa acaaaggctc tttgtcttgt gtcaaagagc atacctataa
601 gatcgaaatg tgctataatc aagctttagg caaagtgaat gttctatctc
651 ctaacagaaa tgtccatgaa tggctgtaca gtttcaagcc aaatttcaat
701 caagttgaaa gcaacaacag aactgtgaat tctcttgcag tgaaatctct
751 gctcatgtca gcagaaaaca acatcatgcc taactctcaa gcgtttgtca
801 aagcttccac tgattctcat ttcaagctga gcctctggct aagggttcca
851 aaggttttga agcagatttc cattcagaaa ttgttcaagg ttgcgggaga
901 tgagacaaat aaaacatttt atttatctat tgcctgcatt ccaaaccata
951 acagtgttga gacagcttta aacattactg ttatttgcaa gcatcagctc
1001 ccaattcgta aatgcaaagc tcctttcgaa ttatcaatga tgttttctga
1051 tttaaaggag ccttacaaca ttgttcatga tccttcatat ccccaaagga
1101 ttgttcatgc tctgcttgaa actcacacat cttttgcaca agttcttagc
1151 aacaatttgc aagaagatgt gatcatctac accttgaaca accatgagct
1201 aactcctgga aagttagatt taggtgaaag aaccttgaat tacagtgaag
1251 atgcctacaa aaggaaatat ttcctttcaa aaacacttga atgtcttcca
1301 actaacacac aaactatgtc ttacttagac agcatccaaa tcccttcttg
1351 gaagatagac tttgccaggg gagaaattaa aatttctccg cagtctattt
1401 cagttgcaaa atctttgtta aagctcgatt taagcgggat caaaaagaaa
1451 gaatctaagg ttaaggaagc atatgcttca ggatcaaaat gatcttgctg
1501 tgtccagcct tttctaatta tgttatgttt attttctttc tttacttata
1551 attatttctc tatttgtcat ttctttcaaa ttcctcctgt ctagtagaaa
1601 ccataaaaac aaaaataaaa taaaataaaa tcaaaataaa ataaaatcaa
1651 aaaatgaaat aaaaaacaaa aaataaaaca aaaaaccaaa aaagatcccg
1701 aaagggacaa ttttggccaa atttgggttt gtttttgttg tttttgtttt
1751 ttgttttttg tttttatttt attttatttt atttattttt attttatttt
1801 tgttttatct tatgtttttt tgttgttttt gttattttgt tatttattaa
1851 gcacaacaca cagaaagcaa actttatttt atcttattta tttttatttt
1901 atttttgttc ttatcttatt ttttgttgtt ttgttatttt gttatttatt
1951 aagcacaaca cacagaaagc aaactttaat taaacacact tatttaaaat
2001 ttaacacact aagcaagcac aagcaataaa gataaagaaa gctttatata
2051 tttgtaggct ttttataatt taacttacag ctgctttcaa gcaagttctg
2101 tgagttttgc ctgtttttta accccaaaca ttccatagaa cttgttaaga
2151 gtttcactgt aatgttccat agcaacactt cctttagcat taggattgct
2201 ggagctaagt atagcagcat actccttccc cttcttcacc tgatcttcat
2251 tcatttcaaa tgctttgctt ttcagcacag tgcaaacttt ccctaaggct
2301 tccctggtgt catacttctt tgggtcgatc ccgaggtcct tatattttgc
2351 atcctgatat atagccaaga caacactgat catctcaaag ctatcaactg
2401 aagcaataag aggtaagcta cctcccagca ttatggcaag cctcacagac
2451 tttgcatcat caagaggtaa tccataagct tgaatcaaag ggtgggaagc
2501 aatcttagat ttgatagtat tgagattctc agaattccca gtttcttcaa
2551 caagcctgac cctgatcaag ctatcaagcc ttctgaaggt catgtcagtg
2601 gctccgatcc tgtctgaagt tttctttatg gtaattttac caaaagtaaa
2651 atcactttgc ttaataacct tcattatgct ctgacgattc ttcaggaatg
2701 tcagacatga aataatgctc atctttttga tctggtcaag gttttccaga
2751 aaaaaagtct tgaagttgaa tgctaccaga ttctgatctt cctcaaactc
2801 aaggtctttg ccttgtgtca acaaagcaac aatgctttcc ttagtgagct
2851 taaccttaga catgatgatc gtagaagttg ttatatgctt tgaccgtatg
2901 taactcaagg tgcaaaagtg caactctgta tcccgcagtc gtttcttagg
2951 gttttaatgt gatgatttgt aagactgagt attaaggttt gaacacaaaa
3001 ttgacacgat tgctct