Sequence of DPV Tomato spotted wilt virus

Tomato spotted wilt virus isolate TSWV-873 nucleoprotein (N) gene, complete cds.

ACC No: AY879108

Dated: 2005-10-06 | Length: 991 | CRC: 1326175359

                !!NA_SEQUENCE 1.0
ID   AY879108   standard; genomic RNA; VRL; 991 BP.
XX
AC   AY879108;
XX
SV   AY879108.1
XX
DT   06-OCT-2005 (Rel. 85, Created)
DT   06-OCT-2005 (Rel. 85, Last updated, Version 1)
XX
DE   Tomato spotted wilt virus isolate TSWV-873 nucleoprotein (N) gene, complete
DE   cds.
XX
KW   .
XX
OS   Tomato spotted wilt virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
XX
RN   [1]
RP   1-991
RA   Thomas J.E., Persley D.M., Sharman M.;
RT   "A Review of Tospoviruses in Australia";
RL   Unpublished.
XX
RN   [2]
RP   1-991
RA   Sharman M.;
RT   ;
RL   Submitted (07-JAN-2005) to the EMBL/GenBank/DDBJ databases.
RL   Department of Primary Industries and Fisheries, 80 Meiers Road,
RL   Indooroopilly, Brisbane, QLD 4068, Australia
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .991
FT                   /country="Australia:Bowen, Queensland"
FT                   /db_xref="taxon:11613"
FT                   /mol_type="genomic RNA"
FT                   /note="collection_date: 1998"
FT                   /organism="Tomato spotted wilt virus"
FT                   /serotype="I"
FT                   /isolate="TSWV-873"
FT                   /specific_host="Capsicum annuum"
FT   gene            complement(99. .875)
FT                   /gene="N"
FT   CDS             complement(99. .875)
FT                   /codon_start=1
FT                   /gene="N"
FT                   /product="nucleoprotein"
FT                   /protein_id="AAX69059.1"
FT                   /translation="MSKVKLTKENIVALLTQGKDLEFEEDQNLIAFNFKTFCQENLDQI
FT                   KKMSVISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGAKDMTFRRLDSLIRVRL
FT                   VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS
FT                   VVLAIYQDAKYKDLGIDPKKYDTKEALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS
FT                   NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLTELA"
XX
SQ   Sequence 991 BP; 279 A; 202 C; 171 G; 339 T; 0 other;

AY879108  Length: 991  October 11, 2005 08:39  Type: N  Check: 6334  ..

       1  ttattttaaa tttagcacac taagcaagca caagcaataa aattaaagaa
      51  agctttatat atttgtagac ttttccataa tttaacttac agctgctttt
     101  aagcaagttc tgtgagtttt gcctgttttt taaccccgaa catttcatag
     151  aacttgttaa gagtttcact gtagtgttcc atagcaatac ttcctttagc
     201  attaggattg ctggagctga gtatagcagc atactctttc cctttcttca
     251  cctgatcttc attcatttca aatgctttgc ttttcagcac agtgcaaact
     301  ttccctaagg cttccttggt gtcatacttc tttgggtcaa tcccgaggtc
     351  tttgtatttt gcatcctgat atatagccaa gacaacactg atcatctcaa
     401  agctatcaac tgaagcaata agaggtaagc tacctcccag cattatggca
     451  agcctcacag actttgcatc atcaagaggt aatccatagg cttgaatcaa
     501  agggtgggaa gcaatcttag atttgatagt gttaagattc tcagaattcc
     551  cagtttcctc tacaagcctg accctgatca agctatcaag ccttctgaag
     601  gtcatgtctt tggctccaat cctgtctgaa gttttcttta tggtaatttt
     651  accaaaagta aaatcacttt gtttaataac tttcattata ctctgacgat
     701  tcttcaggaa tgtcagacac gaaataacac tcatcttctt gatctggtct
     751  aggttttcct gacaaaaagt cttgaagttg aatgctatca gattctgatc
     801  ttcctcaaac tcaaggtctt tgccttgtgt caacaaagca acaatgtttt
     851  ccttagtgag cttaacctta gacatgatga ttgtagaagc tgttatatgc
     901  tttgaccgta tataattcaa ggtgcgaaag tgcaactctg tattccgcag
     951  tcgtttctta gggttttaat gtgatgattt gcaagactga g