Sequence of DPV Turnip mosaic virus

Turnip mosaic virus isolate TALB polyprotein gene, partial cds.

ACC No: AY912093

Dated: 2007-06-01 | Length: 1126 | CRC: 1067416030

                
ID   AY912093; SV 1; linear; genomic RNA; STD; VRL; 1126 BP.
XX
AC   AY912093;
XX
DT   20-FEB-2005 (Rel. 82, Created)
DT   01-JUN-2007 (Rel. 92, Last updated, Version 5)
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DE   Turnip mosaic virus isolate TALB polyprotein gene, partial cds.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1126
RA   Tian Y.P., Zhu X.P., Liu J.L., Yu X.Q., Du J., Kreuze J., Li X.D.;
RT   "Molecular characterization of the 3'-terminal region of Turnip mosaic
RT   virus isolates from Eastern China";
RL   J. Phytopathol. 155:333-341(2007).
XX
RN   [2]
RP   1-1126
RA   Tian Y., Zhu X., Liu J., Yu X., Xi L., Li X.;
RT   ;
RL   Submitted (29-JAN-2005) to the EMBL/GenBank/DDBJ databases.
RL   Department of Plant Protection, Shandong Agricultural University, No. 61,
RL   Daizong Street, Tai'an, Shandong 271018, China
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1126
FT                   /organism="Turnip mosaic virus"
FT                   /specific_host="radish"
FT                   /isolate="TALB"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Tai'an"
FT                   /db_xref="taxon:12230"
FT   CDS             <1. .915
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q5EC45"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q5EC45"
FT                   /protein_id="AAW88766.1"
FT                   /translation="IFEDYEDGAEACVYHQAGETLDAGLTDEQKQVEKEKKEREKAEKE
FT                   RERQKQLALKKGKNAAQEEGERDKEVNAGTSGTFSVPRLKSLTSKMRVPRYEQRVALNL
FT                   DHLILYTPEQTDLSNTRSTRKQFDTWFEGVMADYELTEDKMQIILNGLMVWCSENGTSP
FT                   NINGMWVMMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYG
FT                   LQRNLTDMSLARYAFDFYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTTVE
FT                   NTERHTTEDVNRNMHNLLGVKGL"
FT   mat_peptide     <1. .48
FT                   /product="NIb"
FT                   /note="replicase"
FT   mat_peptide     49. .912
FT                   /product="coat protein"
FT                   /note="CP"
FT   3'UTR           916. .1126
XX
SQ   Sequence 1126 BP; 348 A; 220 C; 300 G; 258 T; 0 other;

ay912093 Length: 1126  01-JUN-2007  Type: N  Check: 6643  ..

       1  atcttcgaag attacgaaga tggtgctgag gcttgtgttt atcaccaggc
      51  aggtgaaacg cttgatgcag gtttgacaga cgagcaaaag caggtggaga
     101  aggagaagaa ggagagagag aaggcagaaa aggaacgaga gaggcagaag
     151  cagttggcac tcaagaaagg caagaatgct gcacaagaag agggagaacg
     201  cgacaaggaa gtaaacgctg gaacctctgg aactttcagt gtacccagac
     251  ttaagagtct gacaagcaag atgcgcgtgc caagatacga gcaaagagtg
     301  gctctaaacc tcgatcatct aatcctatac acgccggagc agacggatct
     351  atccaacaca cgttcaacgc gaaagcagtt tgacacatgg tttgaaggtg
     401  taatggctga ttacgaactg acggaggaca aaatgcaaat cattctcaat
     451  ggtttaatgg tctggtgcag tgagaacgga acctccccga acataaacgg
     501  aatgtgggtg atgatggacg gcgatgatca ggtggaattc ccgatcaaac
     551  cgctcattga ccacgccaaa cccacattta ggcagataat ggcccatttc
     601  agtgacgtag ctgaagcgta cattgaaaag cgtaaccaag accgaccata
     651  catgccacga tatggtcttc agcgcaattt aaccgacatg agcttagctc
     701  gatacgcgtt tgatttctat gaaatgactt ctagaactcc aatacgtgcg
     751  agagaagcac acatccagat gaaagcagca gcactgcgtg gcgcaaataa
     801  caatttgttc ggcttggatg gaaacgttgg tacaacggta gagaacacgg
     851  agaggcatac gaccgaggac gttaatcgga acatgcataa cttacttggc
     901  gttaaggggt tatgaagttg tatgctggta gactataagt atttaagttt
     951  actcgttagt attctcgctt atgggaaata tgtaagtttg ttaaagcagc
    1001  cagtgtgact tcgtcacgtg tgttgttgtt actttctata ttttcgccga
    1051  acattttatt ggtgttagcg catgcggtga ggatcgtcct cgattgcctt
    1101  aacatttgat aggatgcaag ggacga