Sequence of DPV Turnip mosaic virus

Turnip mosaic virus isolate WFLB3 polyprotein gene, partial cds.

ACC No: AY912100

Dated: 2007-06-01 | Length: 1125 | CRC: -19984070

                
ID   AY912100; SV 1; linear; genomic RNA; STD; VRL; 1125 BP.
XX
AC   AY912100;
XX
DT   20-FEB-2005 (Rel. 82, Created)
DT   01-JUN-2007 (Rel. 92, Last updated, Version 5)
XX
DE   Turnip mosaic virus isolate WFLB3 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1125
RA   Tian Y.P., Zhu X.P., Liu J.L., Yu X.Q., Du J., Kreuze J., Li X.D.;
RT   "Molecular characterization of the 3'-terminal region of Turnip mosaic
RT   virus isolates from Eastern China";
RL   J. Phytopathol. 155:333-341(2007).
XX
RN   [2]
RP   1-1125
RA   Tian Y., Zhu X., Liu J., Yu X., Li X., Xi L.;
RT   ;
RL   Submitted (29-JAN-2005) to the EMBL/GenBank/DDBJ databases.
RL   Department of Plant Protection, Shandong Agricultural University, No. 61,
RL   Daizong Street, Tai'an, Shandong 271018, China
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1125
FT                   /organism="Turnip mosaic virus"
FT                   /specific_host="radish"
FT                   /isolate="WFLB3"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Wei'fang"
FT                   /db_xref="taxon:12230"
FT   CDS             <1. .915
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q5EC38"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q5EC38"
FT                   /protein_id="AAW88773.1"
FT                   /translation="IFEDYEDGAEVCVYHQAGETLDAGLTEEQKQAEKERKERERSEKE
FT                   RERQRQLALKKGKNAAQEEGERDNEVNAGTSGTFSVPRLKSLTSKMRVPKFEKRVALNL
FT                   DHLILYTPEQTDLSNTRSTRKQFDTWFEGVMADYELTEDKMQIILNGLMVWCIENGTSP
FT                   NINGMWVMMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYG
FT                   LQRNLTDMSLARYAFDFYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTTVE
FT                   NTERHTTEDVNRNMHNLLGVKGL"
FT   mat_peptide     <1. .48
FT                   /product="NIb"
FT                   /note="replicase"
FT   mat_peptide     49. .912
FT                   /product="coat protein"
FT                   /note="CP"
XX
SQ   Sequence 1125 BP; 349 A; 218 C; 291 G; 267 T; 0 other;

ay912100 Length: 1125  01-JUN-2007  Type: N  Check: 7669  ..

       1  atcttcgaag attacgaaga tggtgctgaa gtgtgtgttt atcaccaggc
      51  aggtgagacg cttgatgccg gtctaacaga agagcagaag caggctgaaa
     101  aggagagaaa ggagagagag agatcagaga aagagcgaga aaggcaaaga
     151  cagctagcgc ttaagaaagg caaaaacgca gcacaagaag agggcgaacg
     201  tgacaatgaa gtaaacgccg gaacttccgg aacttttagc gtgcctagac
     251  tcaaaagtct tacaagcaaa atgcgtgtgc cgaagtttga gaaaagagtt
     301  gccctcaacc tcgatcattt gatcttatat acgccggagc agacggattt
     351  atccaacacg cgttcaacgc ggaagcagtt tgacacttgg tttgaaggtg
     401  tcatggctga ctatgagcta acggaggaca aaatgcaaat cattctcaat
     451  ggtttaatgg tctggtgcat tgagaacgga acctccccga acataaacgg
     501  aatgtgggtg atgatggacg gcgatgatca ggtggaattc ccgatcaaac
     551  cgctcattga ccacgccaaa cccacattta ggcagataat ggcccatttc
     601  agtgacgtag ctgaagcgta cattgaaaag cgtaaccaag accgaccata
     651  catgccacga tatggtcttc agcgcaattt aaccgacatg agcttagctc
     701  gatacgcgtt tgatttctac gaaatgactt ctagaactcc aatacgtgcg
     751  agagaggcac acatccagat gaaagcagca gcactgcgtg gcgcaaataa
     801  taatttgttc ggcttggatg gtaacgtcgg cacaacggta gagaacacgg
     851  aaaggcatac gaccgaagac gttaatcgga acatgcataa cttacttggc
     901  gttaaggggt tatgaagttg tatgctagta gactataagt agttaagttt
     951  actcgttagt attctcgctt atgggaaata tgtaagtttg ttaaagcagc
    1001  cagagtgact tcgtcatgtg tgttgttgtt actttctata ttttcgccga
    1051  actttttatt ggtgttagcg catgtggtga gatactatct cgattgcctt
    1101  aacatttgat aggaagcaag ggaca