Sequence of DPV Grapevine rupestris stem pitting-associated virus

Rupestris stem pitting-associated virus isolate SL48-14 coat protein gene, complete cds.

ACC No: AY927688

Dated: 2005-12-24 | Length: 780 | CRC: 2031113866

                
ID   AY927688   standard; genomic RNA; VRL; 780 BP.
XX
AC   AY927688;
XX
SV   AY927688.1
XX
DT   24-DEC-2005 (Rel. 86, Created)
DT   24-DEC-2005 (Rel. 86, Last updated, Version 1)
XX
DE   Rupestris stem pitting-associated virus isolate SL48-14 coat protein gene,
DE   complete cds.
XX
KW   .
XX
OS   Rupestris stem pitting-associated virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC   Foveavirus.
XX
RN   [1]
RP   1-780
RA   Nolasco G., Santos C., Petrovic N., Santos M.T., Cortez I., Fonseca F.,
RA   Boben J., Pereira A.N., Sequeira O.;
RT   "Rupestris stem pitting associated virus isolates are composed by mixtures
RT   of genomic variants which share a highly conserved coat protein";
RL   Arch. Virol. 151(1):83-96(2006).
XX
RN   [2]
RP   1-780
RA   Nolasco G., Santos C., Boben J., Petrovic N., Fonseca F., Cortez I.,
RA   Pereira A., Santos M., Sequeira O.;
RT   ;
RL   Submitted (10-FEB-2005) to the EMBL/GenBank/DDBJ databases.
RL   CDCTPV, University of Algarve-FERN, Campus de Gambelas, Faro 8005-139,
RL   Portugal
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .780
FT                   /country="Slovenia"
FT                   /db_xref="taxon:196400"
FT                   /mol_type="genomic RNA"
FT                   /organism="Rupestris stem pitting-associated virus"
FT                   /isolate="SL48-14"
FT                   /specific_host="Vitis vinifera"
FT   CDS             1. .780
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="AAY16218.1"
FT                   /translation="MASQIGKLPGESNEAFEARLKSLELARAQKQPEGSNAPPTLSGIL
FT                   AKRKRVIENALSKTVDMREVLKHETVVISPNVMDEGAIDELIRAFGESGIAESVQFDVA
FT                   IDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLE
FT                   TGIPPANWAKKGFNENEKFVAFDFFLGVTDVSALEPKGGIKRAPTKAEMVANIASFGVQ
FT                   VLRQAMAEGKRSSNLGEISGGTAGALINNPFSNVTHE"
XX
SQ   Sequence 780 BP; 229 A; 148 C; 210 G; 193 T; 0 other;

ay927688 Length: 780  24-DEC-2005  Type: N  Check: 537  ..

       1  atggcaagtc aaattgggaa actccctggt gaatcaaatg aggcttttga
      51  agcccggcta aaatcgctgg agttggctag agctcaaaag cagccggaag
     101  gttctaatgc accacctact ctcagtggca ttcttgccaa acgcaagagg
     151  gttatagaga atgcactctc aaagacggtg gacatgaggg aggttttgaa
     201  acacgaaacg gtggtgattt ccccaaatgt catggatgaa ggtgcaatag
     251  acgagctgat tcgtgcattt ggtgaatctg gcatagctga aagcgtgcaa
     301  tttgatgtgg ctatagatat agcacgtcac tgctctgatg ttggtagctc
     351  ccagaggtca accctgatag gcaagagtcc attttgtgac ctaaacagat
     401  cagaaatagc tgggattata agggaggtga ccacattacg tagattttgc
     451  atgtattatg caaaaatcgt gtggaacatc catctggaga cggggatacc
     501  accagctaac tgggccaaga aaggatttaa tgagaacgaa aagtttgtag
     551  cctttgattt tttcttggga gtcacagatg tgagtgcgct tgagccaaag
     601  ggtggaatta aaagagctcc aacgaaagct gagatggttg ctaatatcgc
     651  ctcttttggg gttcaagtgc tcagacaagc tatggctgaa ggcaagcgga
     701  gttccaacct tggagagatt agtggtggaa cggctggtgc actcatcaac
     751  aacccctttt caaatgttac acatgaatga