Sequence of DPV Grapevine fanleaf virus

Grapevine fanleaf virus isolate SH3-3 coat protein (CP) mRNA, partial cds.

ACC No: AY997699

Dated: 2007-10-16 | Length: 1628 | CRC: 1724240568

                
ID   AY997699; SV 1; linear; mRNA; STD; VRL; 1628 BP.
XX
AC   AY997699;
XX
DT   01-MAY-2006 (Rel. 87, Created)
DT   16-OCT-2007 (Rel. 93, Last updated, Version 3)
XX
DE   Grapevine fanleaf virus isolate SH3-3 coat protein (CP) mRNA, partial cds.
XX
KW   .
XX
OS   Grapevine fanleaf virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC   Comoviridae; Nepovirus; Subgroup A.
XX
RN   [1]
RP   1-1628
RX   DOI; 10.1016/j.virusres.2007.04.013.
RX   PUBMED; 17521761.
RA   Sokhandan Bashir N., Nourinejad Zarghani S., Saeid Hejazi M.;
RT   "Diversity of Grapevine fanleaf virus isolates from Iran";
RL   Virus Res. 128(1-2):144-148(2007).
XX
RN   [2]
RP   1-1628
RA   Sokhandan Bashir N., Nourinejad S.;
RT   ;
RL   Submitted (04-APR-2005) to the EMBL/GenBank/DDBJ databases.
RL   Plant Protection, University of Tabriz, 29 Bahman Blvd., Tabriz, E. Az.
RL   51664, Iran
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1628
FT                   /organism="Grapevine fanleaf virus"
FT                   /isolate="SH3-3"
FT                   /ecotype="Shiramin"
FT                   /mol_type="mRNA"
FT                   /country="Iran"
FT                   /isolation_source="sharply toothed leaf margin"
FT                   /clone="2"
FT                   /db_xref="taxon:12274"
FT   gene            <1. .1628
FT                   /gene="CP"
FT   CDS             <1. .1481
FT                   /codon_start=3
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /note="capsid protein"
FT                   /db_xref="GOA:Q1LZV6"
FT                   /db_xref="InterPro:IPR005054"
FT                   /db_xref="InterPro:IPR005305"
FT                   /db_xref="InterPro:IPR005306"
FT                   /db_xref="UniProtKB/TrEMBL:Q1LZV6"
FT                   /protein_id="AAY44379.1"
FT                   /translation="DCQANRYLGTLNIRDMITDFKGVQYEKWITAGLVMPIFKIVIRLP
FT                   ANAFTGLTWVMSFDAYNRITSRITTSADPVYTLSVPHWLIHHKLGTFSCEVDYGELCGH
FT                   AMWFKSTTFESPRLHFTCLTGNNKELAADWQAVVELYAELEEATSFLGKPTLVFDPGVF
FT                   DGKFKFLTCPPIFFDLTAVTALKSAGLTLGQVPMVGTTKVYNLNSTLVSCVLGMGGTIK
FT                   GKVHICAPIFYSIVLWVVSEWNGTTMDWNELFKYPGVYVEADGSFEVKIRSPYHRTPAR
FT                   LLAGQSQRDMSSLNFYAIAGPIAPSGEIARLPIVVQIEEIVRPDLSLPSFEDDYFVWVD
FT                   FSEFTLDKEEIEIGSRFFDFTSNTCRVSMGENPFAAMIACHGLHSGVLDLKFQWSLNTE
FT                   FGKSNGSVTITRLVGDKALGLDGPSQVFALQRLEGTAELLIGNFAGANPNSHFSLYSRW
FT                   MAIKLDQARSMKVLRVLCKPRPGFSFYGRTSFPV"
XX
SQ   Sequence 1628 BP; 417 A; 293 C; 393 G; 525 T; 0 other;

ay997699 Length: 1628  16-OCT-2007  Type: N  Check: 3857  ..

       1  aggattgcca ggcaaatagg tatttgggca ccctaaacat acgtgatatg
      51  attacagatt tcaagggtgt tcagtacgag aagtggataa ctgcaggttt
     101  agtcatgccc attttcaaaa ttgttatcag gctacctgca aacgctttta
     151  ctgggttgac atgggtaatg agtttcgatg cttacaaccg gataactagt
     201  aggattacta ctagcgctga tcctgtgtat accctgtctg tcccacattg
     251  gcttatccac cataaattgg gcacgttttc atgtgaagtt gactatggag
     301  aattgtgtgg acatgctatg tggtttaaat ccacaacatt cgaatctcca
     351  aggttgcatt tcacctgttt aacgggcaat aataaagagt tagcggcaga
     401  ctggcaagct gtcgttgaac tttatgctga gcttgaagag gccacatctt
     451  ttcttgggaa acctacgctg gtatttgatc caggggtttt cgatggtaaa
     501  ttcaagtttt taacttgccc tcccattttc tttgatttaa cggccgtcac
     551  agctctgaag agtgctgggc tgacattggg acaagttcca atggttggta
     601  ccacgaaggt ctacaatttg aacagcactc ttgtgagttg tgttttggga
     651  atgggaggta ctattaaggg aaaggtacac atatgtgcac cgatctttta
     701  tagtattgta ttatgggtcg ttagtgagtg gaacgggacc actatggact
     751  ggaatgaatt gtttaaatat cccggggtgt atgtggaagc tgatgggagt
     801  tttgaagtta aaatccgctc tccatatcac cgaacacctg ctagattgct
     851  cgctggacag agccagagag atatgagttc tcttaacttt tatgcaatag
     901  caggacccat agctccgtcg ggtgaaatcg cacgacttcc aatcgttgta
     951  caaatagagg aaattgtgcg ccctgattta tccttgccaa gttttgaaga
    1001  tgactatttt gtgtgggtag atttttctga atttactctt gataaggagg
    1051  aaattgagat tggatctcgt ttcttcgatt tcacttcaaa cacttgtagg
    1101  gtatcgatgg gagaaaaccc ctttgctgca atgattgctt gtcatggact
    1151  gcatagtggt gtattggacc tcaaatttca atggagtcta aataccgaat
    1201  ttggtaagag caatgggagc gttactatca caaggctagt tggcgacaaa
    1251  gccttgggct tggatggacc atcacaagtt tttgctctcc aaaggttaga
    1301  gggaactgca gagttgctga ttgggaattt tgcaggtgca aatccgaatt
    1351  cacatttctc tctttatagc cgatggatgg caattaaact ggaccaagca
    1401  aggagtatga aggtgctccg agttctgtgt aaaccacgtc caggctttag
    1451  tttttatggt agaactagct ttccagtcta gggtatctga ctttaaaaga
    1501  cccatttata cttagcattt tgtatgtgct agtttacttg ttttgtgtta
    1551  ttgtttgttt taactagtct atttaccgct tttgtgtgtt taatttcatg
    1601  ctttcagtgg cgacagtgtg ttgtttgt