Sequence of DPV Rice gall dwarf virus

Rice gall dwarf virus strain Conghua outer capsid protein gene, complete cds.

ACC No: AY999078

Dated: 2010-06-21 | Length: 1578 | CRC: 139721061

                
ID   AY999078; SV 1; linear; genomic RNA; STD; VRL; 1578 BP.
XX
AC   AY999078;
XX
DT   25-APR-2005 (Rel. 83, Created)
DT   21-JUN-2010 (Rel. 105, Last updated, Version 2)
XX
DE   Rice gall dwarf virus strain Conghua outer capsid protein gene, complete
DE   cds.
XX
KW   .
XX
OS   Rice gall dwarf virus
OC   Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Phytoreovirus.
XX
RN   [1]
RP   1-1578
RA   Deng M.-R., Ruan X.-L., Liu F.-X., Zhao Q., Li H.-P.;
RT   "Sequence Analysis of Segment 8 of Five Chinese Isolates of Rice Gall Dwarf
RT   Virus and Expression of a Main Outer Capsid Protein in Escherichia coli";
RL   Virol Sin 22(4):294-300(2007).
XX
RN   [2]
RP   1-1578
RA   Deng M., Li H.;
RT   "Phylogenetic analysis of rice gall dwarf phytoreovirus isolates from
RT   China";
RL   Unpublished.
XX
RN   [3]
RP   1-1578
RA   Deng M., Li H.;
RT   ;
RL   Submitted (04-APR-2005) to the EMBL/GenBank/DDBJ databases.
RL   Plant Virology Laboratory, South China Agricultural University, Wushan
RL   Street, Tianhe District, Guangzhou, Guangdong 510640, the People's Republic
RL   of China
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1578
FT                   /organism="Rice gall dwarf virus"
FT                   /segment="8"
FT                   /strain="Conghua"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Conghua"
FT                   /db_xref="taxon:10986"
FT   CDS             21. .1301
FT                   /codon_start=1
FT                   /product="outer capsid protein"
FT                   /note="P8"
FT                   /db_xref="GOA:Q52MQ1"
FT                   /db_xref="InterPro:IPR008935"
FT                   /db_xref="InterPro:IPR008980"
FT                   /db_xref="InterPro:IPR009807"
FT                   /db_xref="UniProtKB/TrEMBL:Q52MQ1"
FT                   /protein_id="AAY14577.1"
FT                   /translation="MSRQAWIETSALTECISEYGTKCSFDTFQGLTINDISTLSNLMNQ
FT                   ISVASVGFLNDPRTPPQAMSCEFVNFISAADRHAYMLQKNWFDSDVAPNVTTDNFIATY
FT                   IKPRFSRTVSDVLRQVNNFALQPMENPKLISRQLGVLKAYDIPYSTPINPMDVARSSAN
FT                   VVGNVSQRRALSTPLIQGAQNVTFIVSESDKIIFGTRSLNPIAPGNFQINVPPWYSDLN
FT                   VVDARIYFTNSFLGCTIQNVQVNAVNGNDPVATITVPTDNNPFIVDSDSVVSLSLSGGA
FT                   INVTTAVNLTGYAIAIEGKFNMQMNASPSYYTLSSLTIQTSVIDDFGLSAFLEQFRIRL
FT                   RASGQTEIFSQSMNTLTENLIRQYMPANQAVNIAFVSPWYRFSERARTILTFNQPLLPF
FT                   ASRKLFIRHLWVIMSFIAVFGRYYTVN"
XX
SQ   Sequence 1578 BP; 450 A; 342 C; 340 G; 446 T; 0 other;

ay999078 Length: 1578  21-JUN-2010  Type: N  Check: 5673  ..

       1  ggtatttttg taccaacacg atgtcgcgcc aagcttggat cgaaactagt
      51  gcactgactg aatgcatttc ggagtatggg accaaatgtt cctttgatac
     101  tttccaagga ctaacaatta atgacatttc tactttgtct aatttaatga
     151  accaaatttc cgtggcgtca gtgggattcc tgaatgaccc aagaaccccc
     201  cctcaggcta tgtcatgtga atttgttaat tttatttcag cggctgaccg
     251  gcatgcgtac atgctgcaaa agaattggtt tgactcagat gtagcgccaa
     301  acgttacaac agataatttc atagctacat acattaaacc tcggttttca
     351  agaacagtgt ctgatgtact gcgccaggtt aataattttg ccttgcagcc
     401  aatggaaaat ccaaaactga tctccagaca acttggagtt ctgaaggctt
     451  atgatatacc gtattcgaca ccaattaatc caatggatgt ggctagatcg
     501  tcagccaacg tagttggaaa cgtgtcacag agaagggctc tgtctacacc
     551  cttgatccaa ggggcacaga acgtaacttt catcgtttct gagtccgata
     601  aaatcatttt tggaactaga tcattaaatc ctattgctcc gggcaatttt
     651  cagattaacg taccaccatg gtactcagac ctgaacgtag ttgacgctag
     701  gatttatttc actaatagct tcttaggatg tacaattcaa aatgttcagg
     751  tgaacgcggt caacggtaac gacccagtcg caaccattac tgtgccgacc
     801  gacaacaacc cctttatcgt cgatagtgac tcagtcgtct cactgtcgct
     851  atcgggtgga gccattaacg taactaccgc agttaattta actgggtatg
     901  cgatcgctat tgagggtaag tttaacatgc aaatgaacgc tagcccatct
     951  tactatacct tgagttcact aacaattcag acaagcgtaa tcgatgactt
    1001  cggactatcc gcatttttgg aacaattccg aatcaggttg cgcgcttcag
    1051  gccagactga aatttttagt cagtcgatga acactttaac agagaatttg
    1101  attaggcaat atatgccagc taatcaggcg gtaaatatcg cttttgtatc
    1151  accctggtac aggttctcgg agcgcgccag aactattctg acgtttaacc
    1201  aacccctgct cccattcgca tcccgaaaat tgtttattag acatttgtgg
    1251  gtcataatgt cttttattgc tgtttttggt aggtattaca cagtgaacta
    1301  aatctggtaa tgagtgtgaa tgctgacgca ctaaccacca gcagtagacc
    1351  atctttatat gttagattaa tatagcaacg ggtgatgacg gcaatcaact
    1401  caagagttga ggagtatctc aacgtgctga ctcgcatgcc atatactttg
    1451  cgataatttc atcagtggac tgtcgaaatt cgaacgaggt acgcttcgcg
    1501  ctggattgaa gggagtagga ggaaatgctg aaaccggagt gccagtaaca
    1551  ggcgggtcgt gtggtcacaa aaaatgat