Sequence of DPV Beet ringspot virus
Beet ringspot virus gene for polyprotein, complete cds.
ACC No: D00322
Dated: 2007-09-26 | Length: 7362 | CRC: 713889888
ID D00322; SV 1; linear; genomic RNA; STD; VRL; 7362 BP.
XX
AC D00322;
XX
DT 12-APR-1990 (Rel. 23, Created)
DT 26-SEP-2007 (Rel. 93, Last updated, Version 10)
XX
DE Beet ringspot virus gene for polyprotein, complete cds.
XX
KW .
XX
OS Beet ringspot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC Comoviridae; Nepovirus; Subgroup B.
XX
RN [1]
RP 1-7362
RA Fritsch C.;
RT "Beet ringspot virus gene";
RL Unpublished.
XX
RN [2]
RA Greif C., Hemmer O., Fritsch C.;
RT "Nucleotide sequence of tomato black ring virus RNA-1";
RL J. Gen. Virol. 69:1517-1529(1988).
XX
FH Key Location/Qualifiers
FH
FT source 1. .7362
FT /organism="Beet ringspot virus"
FT /segment="1"
FT /strain="S"
FT /mol_type="genomic RNA"
FT /clone="p1831, p1628, p103, p1792, p172, p160, psTP29"
FT /note="5' end of TBRV RNA-1"
FT /note="TBRV has a genome consisting of two ssRNA species of
FT RNA-1 and RNA-2. The sequence of the RNA-1 was determined
FT from overlapping cDNA clones."
FT /db_xref="taxon:191547"
FT CDS 261. .7061
FT /codon_start=1
FT /product="polyprotein"
FT /note="ORF"
FT /db_xref="GOA:P18522"
FT /db_xref="UniProtKB/Swiss-Prot:P18522"
FT /protein_id="BAA00234.1"
FT /translation="MSVTLSPSGDCFSFNHVKYNNSLNKYLFYNSNLDIVLDDFDFYFN
FT FYVKKYNVLLSFFSDRVLSALYTSMSVSEAASLAMEDFCELALDELKINPFHQLWEETL
FT ANWPVYPGTSLLDFCRTQYEIRREAAEASAEILRLKEVARQRAFDDEVEFLIKHGAKVH
FT FAPSFAAQLWRAGKDQKKCRGILLGKLNKAKALGEAHRSAVARAQAKAEVLREFEPSPQ
FT QIQRALEAQIFADRLSRKYAALTARVRAKRAAARELREKELFLETQDLLNAPLLPPMEK
FT VGIERKYRKVRPTGSNVTSTPKPNVLENLCPFMGLGAKTADVRCQATLMAGKIHPQYPR
FT LASAIYAWVLGPSMKFECIAPVKTFIKGLTFMVDYFPEEVLIDELNKINSEARCFEASL
FT VLEEERAKLEAHAENANCRANIFMKAMAGVKNMAKCAYSGFLTGCEEAGRSLSEGVCSV
FT MINSFRECIKMIHKELGCAMELIEVMIKKVKDWYNSMLEKLHCGLATLGTYAMYALAIL
FT LGCGLTTLLERCIGGAGILTKLFVTGVFAAIGLHAAGGFDGLQREMVQMCTALAAGIFD
FT VHHKGNGKYSPMADILAEQRLEDRRADNVRSIPIISGIISAMQQFGTGLCSMHSISLIE
FT IGKLGAACHSMRMGKEALKEFCATIMYYLGRISDKVTGRETVFFDELSTLVSVDVRGWI
FT LCAQSCIRESFHTEIGNQFFRDMVAQLVDDGQKLQVGVNGIPRKISTDYSQLIGQIMKD
FT LMELHKRTIRAGISEGRRCEPVWIYLFGQRHCGKSNFMATLDNALAKHFGLPNTTAYRN
FT CKDSFFSGYSGQTFFHVDDLSSVKLDPPMEAEMINLVSCQEVPLNMADLADKPIYFRSP
FT FIISSSNFEDVPAGCGVRDIEAYRSRKACLVEMRRKPGVLFDPDNPLLASQARFKDPMS
FT QMLLEGQTEENSWLEMEDVVTEIINISARHRAAQEKLQARYMREKSLLDPLALAAENFL
FT KGEVQNAYLDFSGLELEKAGIPKPQGGRGLYVDGSLYLLDPTFQFEEIPITDDGYKRLW
FT DERMRKSFLSKIQTGEYLNSKSMVVTGFLRSLVNGDCAVLSKDTLSSSASVAQQSIFKA
FT LGIDERIYLRTLQHQLDLYSADIPENPYSNSAWIKILKAIGMGRTYLAENGCGILMIAA
FT ALILILVSAWGFWKLFIGLFSGSMSLGAAIVGMSAVDIKAQQKSSSQEGGYRARNIPIH
FT HRYAYAKSQAGDGLLPAARLCVAIYQPGGGFVSAMQYKNKSVRMTRHQALRFQEGEQLT
FT VIFSSTGESQLIRWHKYHMREEPGSEIVTWLAPSLPSLSPDLKDLFLEDKEVDLPNHFK
FT TIGYVLRVDNTAFHYDLLDTYAAVDKTPLPLKGVVGNELYLHEIPEKITFHYESRNDDC
FT GMIILCQIKGKMRVVGMLVAGKDKTSWADIMPPNTLAELQSQIEYIPKFGEAYDGFFKA
FT GYVPMADAPTLPKKTNMVPVPQSLRVPCDVPIKEPAVLTNADKRCPAGVNPPVTALKKK
FT FEHPMKELEQEILDEVATDILETWYDCEDHVLNDIPLVVAINGIPADSEEAELENFVMK
FT TSPGYPYFKNNRAEKLKGKSAYFEEAEDGTLKLKEGGMAAKLHENLVEFTKNEVPELVV
FT IECTKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQHNRHVLPCQVGTNP
FT YSREWGHMLNRLMRPKTNEAINCDYSGFDGLLNAQVIECIAKMINRLYALSGESEVQQA
FT QRYNMLMALVGRYAFVGPEVYKVNCGLPSGFALTVVVNSVFNEILIRYAYKKLAPKPER
FT NRFNQVVCLLVYGDDNLISVSPSIASWFTGEAIRITLAEKKVKITDGSDKDAPTIEAKS
FT FWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKSKFHASQRASDFQGTVDVVE
FT ELILNVNVALMELYLHNDPREFSRVRDFYIKALPLATGQFRTWAFCEAFHSAQQTGMLK
FT YDPAKVLDHMSGLDFKKFMHVSEQGNKAHFYTEMLGVAGPHYKPQENDFIVSTEPLKMG
FT VCGEHVPIQYGSGVGGLPTKKWVLDFGRPSQLKNKLGYLIHPILRAQIEAGKRLVFMSP
FT APYVANNAALIAFGTGGKMLIQKDALVHYRNVIPESTSGLEQYFDAPLPTATIGTFYFA
FT NGETYAALCEYKEGKVLNYEGFPTLILNEAAKDRKVPCMVATQAKTKFKVSLACDSTMC
FT PHHTAVCETYEKAFRHCWLAKCKTSAVKVSPWHGTKLS"
FT misc_difference 894
FT /replace="c"
FT /citation=[2]
FT misc_difference 2498
FT /replace=""
FT /citation=[2]
FT misc_difference 2502
FT /replace=""
FT /citation=[2]
FT misc_difference 2510. .2511
FT /replace="ac"
FT /citation=[2]
FT misc_difference 2525
FT /replace=""
FT /citation=[2]
FT misc_difference 3241
FT /replace=""
FT /citation=[2]
FT misc_difference 3277
FT /replace=""
FT /citation=[2]
FT misc_difference 3293
FT /replace=""
FT /citation=[2]
FT misc_difference 3992
FT /replace="a"
FT /citation=[2]
FT misc_difference 4014
FT /replace=""
FT /citation=[2]
FT misc_difference 4112
FT /replace="c"
FT /citation=[2]
FT polyA_site 7362
FT /note="polyadenylation site"
XX
SQ Sequence 7362 BP; 1927 A; 1537 C; 1734 G; 2164 T; 0 other;
d00322 Length: 7362 26-SEP-2007 Type: N Check: 9228 ..
1 ttgaaaataa attttcaagt ctttacattg tgtacaccca ctgctttcta
51 ttgaagtcaa ggtaacgccc tgcaccaact tgcttgcaac gttctcacaa
101 tcatattgtg aatttctttt ctcttgcatt gctgcggtaa tacagcactg
151 atttcttttg agatcagacc aagtcttaac ttggtgtgcg ttcttttcat
201 tgaagtgtag gatagcgcct accaatcgat tatcaggatc gcgcctgata
251 ttttgtgaac atgtccgtta ctctttcccc ttctggggat tgtttttctt
301 ttaaccatgt taaatataat aatagtttaa ataaatattt attttataat
351 agtaatttag atatcgtcct tgacgatttt gatttttatt ttaattttta
401 tgttaaaaag tataatgttt tactttcttt cttttctgac agagttttat
451 cggcactata tacgtcgatg tctgtcagcg aggctgcctc tctcgcaatg
501 gaggactttt gtgagcttgc tcttgacgag ctcaagataa atcctttcca
551 ccaactgtgg gaggagactt tggccaactg gcctgtttat ccggggactt
601 ctctcctgga tttctgccgg actcaatatg agatccgaag agaggctgct
651 gaggcctccg ctgaaatcct ccgtctgaag gaggttgcac gtcagcgtgc
701 atttgatgat gaggtggaat tccttatcaa acatggggct aaagttcatt
751 ttgcccccag cttcgccgct cagttgtggc gagctggaaa ggaccaaaag
801 aaatgccgag gcattcttct gggaaagctc aacaaggcta aggccttggg
851 cgaggcccat cgttcagcgg tggctcgagc ccaggctaag gctgaggttt
901 tgagggagtt tgagccctcg ccccaacaaa tccaaagagc tcttgaggct
951 caaatatttg cggacagatt gtctcgcaag tatgctgctc tcaccgctcg
1001 ggtgcgagcg aagcgggccg ctgcccgaga gctccgcgag aaggagcttt
1051 ttctggagac acaagatctc ctgaatgcac ccctgctgcc acccatggaa
1101 aaggtgggaa ttgaaaggaa gtaccgcaag gtacgaccta ctgggtccaa
1151 tgtgacctct actcccaagc caaatgtgct tgaaaatctt tgccctttta
1201 tgggcttggg agccaagacc gctgatgtgc ggtgtcaggc cactctgatg
1251 gccggcaaaa tacatcccca atacccccga ctggcttctg ctatatatgc
1301 ctgggtactt gggccttcca tgaaatttga gtgcattgca ccagttaaga
1351 cctttatcaa gggtctaact ttcatggttg attacttccc tgaggaggtc
1401 ctcattgatg agctcaacaa aattaattcc gaggctcgct gttttgaggc
1451 ttccctcgtt ctggaagaag aaagggccaa gcttgaggcc catgccgaaa
1501 atgcgaactg ccgcgcaaat attttcatga aagctatggc aggagttaag
1551 aatatggcta aatgtgccta ttccggattt ctgactggct gtgaagaagc
1601 aggtcgctca ctctctgaag gcgtgtgttc tgtaatgata aattcattca
1651 gggagtgcat taaaatgatt cacaaggagc ttggctgtgc aatggagctt
1701 attgaagtca tgattaagaa ggtcaaggat tggtacaatt ccatgttgga
1751 gaaactccat tgtggccttg ccactcttgg cacttatgcc atgtatgcac
1801 ttgccatcct tcttggatgt ggactcacca ctcttttgga gaggtgtatt
1851 gggggagctg gtattcttac caagctcttt gttactggag tcttcgctgc
1901 tatagggctc catgctgctg ggggttttga tggtcttcag cgtgaaatgg
1951 tgcaaatgtg tactgcactt gctgcaggga ttttcgatgt gcaccataag
2001 gggaatggaa aatactcccc aatggcagac atcttggctg aacagcgcct
2051 ggaagacaga cgagctgata atgttcggtc aattcctata atctcaggta
2101 tcatttctgc gatgcaacaa tttggtactg gcctgtgctc catgcattct
2151 atttcgctca ttgaaattgg aaagcttggt gctgcatgcc attctatgag
2201 aatgggaaaa gaggccttaa aggagttctg cgccaccata atgtattatc
2251 ttggtagaat ttccgacaag gttactggaa gggagacagt gttctttgat
2301 gagctatcta ctcttgtctc cgttgatgtt cgtggttgga tactctgcgc
2351 tcaaagctgt attcgtgaat ccttccacac tgagattggc aaccagttct
2401 tccgtgatat ggttgcccaa ctggttgatg atggccaaaa actccaggtt
2451 ggagtcaatg gtataccacg gaagatttct accgattaca gccagctaat
2501 cggtcagatc atgaaggacc taatggaact ccacaaaaga accattaggg
2551 ctggcatctc tgaagggcgg cgctgtgaac ctgtatggat ctatttattt
2601 ggacagcgcc attgtgggaa gtcgaacttt atggctacgc ttgataatgc
2651 tcttgctaag cattttggac ttccaaatac tacagcttat agaaattgca
2701 aagacagttt cttctctggg tatagtggtc agactttttt ccacgttgac
2751 gatctttcgt ctgtaaagct tgacccacct atggaagctg aaatgataaa
2801 tttggtctct tgccaagaag taccgctgaa tatggctgat cttgctgata
2851 agccaattta tttcaggagt ccttttatca tttcctctag caatttcgag
2901 gatgttcctg caggctgtgg cgttcgtgat attgaagcat atagatcgcg
2951 aaaggcgtgt cttgtcgaaa tgcgccggaa gcctggtgtt ctttttgacc
3001 ctgacaatcc tttgttggca tctcaggccc gcttcaagga tcctatgtcc
3051 caaatgctat tggagggaca gactgaggaa aactcctggc ttgaaatgga
3101 agatgttgtt actgaaatta tcaacatctc tgcgcgtcat cgcgctgcac
3151 aggagaaatt gcaggccaga tatatgcgtg agaaatcatt gcttgacccc
3201 ctagcacttg ctgctgaaaa ttttcttaaa ggggaggtac aaaacgcata
3251 tcttgatttt tctggtcttg aacttgaaaa agctggaatc ccaaaaccgc
3301 aaggaggtag gggtttgtat gttgatggga gtttatatct ccttgatcca
3351 acattccagt tcgaggaaat acccattact gatgatgggt ataagcgttt
3401 gtgggacgag agaatgagga aaagtttcct cagcaagatc caaactggtg
3451 aatacctaaa ttcgaaatca atggttgtca ctggtttcct tcgttccctg
3501 gtgaacgggg attgtgctgt tctttcaaaa gacacactct cgtccagtgc
3551 ttcagtggcc cagcaatcta tttttaaagc actggggatt gacgagcgta
3601 tttatctgcg tacactccaa caccaattgg atctttattc tgcggatatc
3651 ccagaaaatc cctacagcaa ttctgcctgg attaaaattt taaaggctat
3701 aggcatgggt agaacatatc ttgcagaaaa tggctgtggg atcttaatga
3751 ttgcggcagc tctcatactc attcttgtga gtgcatgggg tttctggaaa
3801 ctctttatag ggcttttcag tggttctatg tctttggggg ctgctatcgt
3851 gggcatgtct gctgtggaca ttaaggctca acagaagtca agcagccagg
3901 aaggaggata tagggctcga aacatcccta tacatcaccg ttatgcatat
3951 gccaaatccc aggctggtga tggtttgctc cccgcggcac gtttgtgtgt
4001 tgctatctat caacccgggg ggggttttgt ttccgcaatg caatataaga
4051 ataaatcagt gcgaatgaca agacaccaag cattgcgttt tcaggaaggt
4101 gaacaattga cggttatctt ttccagtacg ggagagtcac aactcatccg
4151 ctggcataaa taccatatgc gtgaggaacc aggttctgag attgttacct
4201 ggttggctcc aagccttcct tccctttccc ccgatcttaa agatctgttt
4251 ttggaggata aggaggtgga tttgccaaac cactttaaaa caattggtta
4301 cgtcctgcgt gttgacaata cagcattcca ttatgatttg cttgatactt
4351 atgctgctgt cgacaagaca cccctaccgc taaaaggtgt ggtaggaaat
4401 gaactctacc tgcatgaaat accagagaag attacctttc actatgaatc
4451 acgaaatgat gattgtggaa tgataatctt gtgccaaatc aagggcaaga
4501 tgcgtgtagt agggatgcta gttgcaggga aagataagac tagctgggct
4551 gatataatgc caccaaatac cttagctgaa cttcagagcc aaattgaata
4601 tattccgaag tttggagagg catatgatgg cttttttaaa gccggctatg
4651 taccaatggc tgatgcgcct accctgccaa agaagactaa catggtacca
4701 gtcccccaat ctctgagggt gccatgtgat gtccctatca aggaacctgc
4751 agtgttaacc aatgctgaca aacgctgtcc tgcgggcgtc aacccaccag
4801 ttacagctct taaaaagaag tttgaacatc caatgaaaga gctagaacaa
4851 gaaatcctcg atgaggttgc cacggacatt ctggaaacgt ggtatgattg
4901 tgaggaccat gtccttaatg atattccatt ggtggttgcc atcaatggaa
4951 tacctgctga tagtgaggag gctgaactag aaaattttgt catgaaaacc
5001 tcacctggat acccctactt caagaataac cgtgcagaga aactgaaagg
5051 caaatctgct tattttgaag aggcagagga tgggaccctc aaactgaaag
5101 aagggggaat ggcagctaaa ctccatgaaa acttggtgga gtttacaaag
5151 aatgaagttc cggagctggt cgtgattgaa tgtacgaagg atgagttgct
5201 accggagcgc aaaatcaagg ttggtgcttg tagactcttt gagataatgc
5251 ctttgcatta caatctcttt ttgcgccaaa agacatgtgc tttcacccag
5301 ttcttacagc acaatagaca tgtcttgcct tgtcaagttg ggacgaaccc
5351 ctattcccgc gaatggggtc atatgttgaa tcgtctcatg cgaccaaaaa
5401 ccaatgaagc cataaattgt gactatagtg gttttgatgg actcctgaat
5451 gcccaggtta ttgaatgcat agctaaaatg attaatcgtc tctatgctct
5501 ctctggggaa tctgaagtcc aacaagccca acgctacaat atgctgatgg
5551 cattggttgg aagatacgct tttgtagggc cagaagtgta taaggttaac
5601 tgtggtttgc cctctggatt tgccttgacg gttgtggtga attctgtttt
5651 caatgagatt ttgatccgct atgcctacaa gaaactagca ccaaaacctg
5701 agcgaaatcg cttcaatcag gtagtatgct tgttggtata tggagatgac
5751 aatctcattt ccgtgtctcc gtccattgcc tcctggttta caggtgaggc
5801 catccgtatc actcttgctg agaagaaggt aaaaattact gatggcagtg
5851 ataaggatgc cccaacaatt gaggcaaaat ctttctggga gctggacttt
5901 cttaaaagaa aattcctgaa gcttgataat ggcattgtcc aggctcccct
5951 tgatcggtca gcaatattct cttcgttata ttggctgacc cccgataaat
6001 ccaaattcca tgcgtctcaa agagcctcag attttcaggg gaccgtggat
6051 gttgtagaag agttgatttt aaacgttaat gttgccctta tggaactcta
6101 tctacataat gatcccagag aattttcgcg tgtgcgtgat ttctatataa
6151 aggctttacc attagccaca ggccagtttc gtacctgggc tttttgtgag
6201 gcttttcatt cagcacagca gactgggatg ctgaaatatg atcctgcaaa
6251 agttttagat cacatgtctg gcttagattt taaaaaattt atgcatgtgt
6301 ctgaacaggg gaataaagcc catttttaca ctgaaatgtt gggcgttgca
6351 ggacctcact acaaacctca ggagaatgat tttattgtct ctactgagcc
6401 tcttaagatg ggggtttgtg gtgaacacgt acccattcaa tatgggtctg
6451 gtgttggggg acttcccaca aagaaatggg ttctggattt tggcaggcct
6501 tcacaactga agaataaact gggctacctt atccatccta tcttgagggc
6551 gcaaattgag gcagggaaga gacttgtatt tatgagtcct gctccctacg
6601 ttgcaaataa tgctgccttg attgcttttg gcactggtgg aaaaatgctc
6651 atccaaaagg atgccttggt acactacaga aatgtaattc ccgagtcaac
6701 ttctggattg gaacaatatt ttgatgcccc tctcccaacc gccactatcg
6751 gtaccttcta ttttgccaat ggtgaaacct atgctgccct ctgtgaatat
6801 aaggaaggaa aagttctcaa ttatgagggt tttcccactc taattttgaa
6851 tgaggcagca aaagatagaa aggtgccctg tatggtggca acacaagcca
6901 aaaccaaatt caaagtttct ttggcttgtg atagtacaat gtgtccccat
6951 cacactgctg tgtgtgagac ctatgagaaa gcctttcggc actgttggtt
7001 ggccaagtgc aaaaccagtg ccgtgaaggt ttctccttgg catgggacta
7051 aactttctta ggtatttctt atagagaata tccctccctg gtgatctgga
7101 gtaaaaagaa ccatttggtg ttgagataac caaattgaaa taactcaact
7151 ttgagcaatg cttagacctt cgtggttgct ctcatattta aggtcattgt
7201 gaaattttct tttgttttcc taatttaggt ttaatttctg ttgtgtgttt
7251 aattactgtt ttcagtggcg atgcataggg tttgtccttt tccctgtggt
7301 gctatgttgg acacaaaaag attttctctt ttgtaaatga taaaatgttt
7351 tcttcaaaaa gc