Sequence of DPV Rotavirus A

Rotavirus subgroup 1 gene for VP6, complete cds.

ACC No: D00325

Dated: 2003-07-07 | Length: 1356 | CRC: -2113626610

                !!NA_SEQUENCE 1.0
ID   HROVVP6    standard; genomic RNA; VRL; 1356 BP.
XX
AC   D00325;
XX
SV   D00325.1
XX
DT   11-APR-1990 (Rel. 23, Created)
DT   07-JUL-2003 (Rel. 76, Last updated, Version 6)
XX
DE   Rotavirus subgroup 1 gene for VP6, complete cds.
XX
KW   capsid protein; gene 6; genomic segment 6; major inner capsid protein.
XX
OS   Rotavirus subgroup 1
OC   Viruses; dsRNA viruses; Reoviridae; Rotavirus; Rotavirus A.
XX
RN   [1]
RP   1-1356
RX   MEDLINE; 88274335.
RX   PUBMED; 2455770.
RA   Gorziglia M., Hoshi Y., Nishikawa K., Maloy W.L., Jones R.W.,
RA   Kapikian A.Z., Chanock R.M.;
RT   "Comparative sequence analysis of the genomic segment 6 of four rotaviruses
RT   each with a different subgroup specificity";
RL   J. Gen. Virol. 69:1659-1669(1988).
XX
DR   GOA; P16487.
DR   SWISS-PROT; P16487; VS06_ROTH1.
XX
CC   98.75% of gene 6 of rotavirus strains 1076, Gottfried, H-2 and
CC   FI-14 was sequenced directly by the dideoxynucleotide method using
CC   synthetic oligonucleotides to prime cDNA synthesis from mRNA. The
CC   remaining 1.25% represents the 17 nucleotide long primer used to
CC   initiate the primer extension.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1356
FT                   /db_xref="taxon:10978"
FT                   /mol_type="genomic RNA"
FT                   /note="5' end of genomic segment 6 (plus strand)."
FT                   /organism="Rotavirus subgroup 1"
FT                   /serotype="2"
FT                   /strain="1076"
FT   CDS             24. .1217
FT                   /codon_start=1
FT                   /db_xref="GOA:P16487"
FT                   /db_xref="SWISS-PROT:P16487"
FT                   /product="VP6"
FT                   /protein_id="BAA00237.1"
FT                   /translation="MDVLYSLSKTLKDARDKIVEGTLYSNVSDLIQQFNQMIITMNGNE
FT                   FQTGGIGNLPIRNWNFDFGLLGTTLLNLDANYVETARNTIDYFVDFVDNVCMDEMVRES
FT                   QRNGIAPQSDSLRKLSGIKFKRINFDNSSEYIENWNLQNRRQRTGFTFHKPNIFPYSAS
FT                   FTLNRSQPAHDNLMGTMWLNAGSEIQVAGFDYSCAINAPANTQQFEHIVQLRRVLTTAT
FT                   ITLLPDAERFSFPRVINSADGATTWYFNPVILRPNNVEVEFLLNGQIINTYQARFGTII
FT                   ARNFDTIRLSFQLMRPPNMTPTVAALFPNAQPFEHHATVGLTLRIESAVCESVLADASE
FT                   TMLANVTSVRQEYAIPVGPVFPPGMNWTDLITNYSPSREDNLQRVFTVASIRSMLIK"
XX
SQ   Sequence 1356 BP; 458 A; 241 C; 250 G; 390 T; 17 other;

 D00325  Length: 1356  January 8, 2004 16:02  Type: N  Check: 5121  ..

       1  ggcttttaaa cgaagtcttc aacatggatg tcctgtactc attgtcaaaa
      51  actcttaaag acgccagaga caagatcgtt gaaggcacat tatactccaa
     101  tgtaagtgat ctaattcaac agtttaatca aatgataatt actatgaatg
     151  gaaatgaatt tcaaactgga ggaattggca acttacccat tagaaattgg
     201  aattttgatt ttggcctact tggaactact ctactaaact tagatgctaa
     251  ttacgttgaa actgcacgta atacaattga ttattttgtc gattttgtgg
     301  ataatgtatg catggatgag atggttaggg aatcacaaag aaatggaatc
     351  gcaccgcaat cagactcact cagaaaactg tcaggcatta aatttaaaag
     401  aataaatttt gacaattcat cagagtatat tgaaaattgg aatctgcaga
     451  atagaagaca gagaacaggt ttcacattcc acaagccgaa catctttcct
     501  tattcagcat catttacact aaaccgatcg caaccagctc atgataattt
     551  aatgggtaca atgtggttaa atgcaggatc agaaattcag gttgctggat
     601  ttgattattc atgtgctatt aacgctccag ctaatacaca acaatttgaa
     651  catattgtac agctccggag agtactaact actgctacga taactctttt
     701  accagacgca gaaagattta gttttccaag agtgattaat tcagctgacg
     751  gagcaactac atggtatttt aatccagtga ttcttaggcc aaataacgtt
     801  gaagtagagt ttctgttgaa tgggcaaata ataaacactt atcaagcaag
     851  atttggaaca ataatagcta gaaattttga tactattaga ttgtcattcc
     901  agctaatgag accaccaaat atgacaccaa cagtagctgc actatttcca
     951  aatgcacaac catttgaaca tcatgctacg gtaggcctaa cactaagaat
    1001  tgagtctgca gtgtgtgaat cagtactagc tgatgcgagc gaaacaatgc
    1051  tagctaatgt aacgtctgtt aggcaggaat acgcaatacc agttggacca
    1101  gtatttccac caggcatgaa ttggactgat ctaatcacta attactcacc
    1151  atctagggag gataatttgc agcgtgtgtt tacagtggct tccattagaa
    1201  gcatgctaat taaatgagga ccaagctaac tacttggtat ccgaacttta
    1251  taagcatgta gctatgtcaa gctatttgaa ctttgtaagt aaggatgtat
    1301  ttatacattc gctacacaaa gtaatcactt caatgatgtn nnnnnnnnnn
    1351  nnnnnn