Sequence of DPV Zucchini yellow mosaic virus

Zucchini yellow mosaic virus gene for polyprotein precursor, partial cds.

ACC No: D00692

Dated: 2007-12-07 | Length: 1546 | CRC: 1020970784

                
ID   D00692; SV 1; linear; genomic RNA; STD; VRL; 1546 BP.
XX
AC   D00692;
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DT   01-JUN-1991 (Rel. 28, Created)
DT   07-DEC-2007 (Rel. 94, Last updated, Version 6)
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DE   Zucchini yellow mosaic virus gene for polyprotein precursor, partial cds.
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KW   .
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OS   Zucchini yellow mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1546
RX   PUBMED; 2374012.
RA   Grumet R., Fang G.;
RT   "cDNA cloning and sequence analysis of the 3'-terminal region of zucchini
RT   yellow mosaic virus RNA";
RL   J. Gen. Virol. 71:1619-1622(1990).
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CC   These data kindly submitted in computer readable form by:
CC   Rebecca Grumet
CC   Horticulture Department Michigan State University
CC   East Lansing
CC   MI 48824
CC   USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1546
FT                   /organism="Zucchini yellow mosaic virus"
FT                   /strain="Conneticut"
FT                   /mol_type="genomic RNA"
FT                   /clone="#157"
FT                   /note="15 genome % units"
FT                   /db_xref="taxon:12232"
FT   CDS             <1. .1335
FT                   /codon_start=1
FT                   /product="polyprotein precursor"
FT                   /db_xref="GOA:Q89335"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q89335"
FT                   /protein_id="BAA00596.1"
FT                   /translation="DLILAVKDEDSGLLDNMSSSFCELGLNYDFSERTHKREDLWFMSH
FT                   QAMLVDGMYIPKLEKERIVSILEWDRSKEIMHRTEAICAAMIEAWGHTELLQEIRKFYL
FT                   WFVEKEEVRELAALGKAPYIAETALRKLYTDKGAHKSELARYLQALHQDIFFEQGDTVM
FT                   LQSGTQPTVSDAGATKKDKEDDKGKNKDVTGSGSGEKTVAAVTKDKDVNAGSHGKIVPR
FT                   LSKITKKMSLPRVKGNVILDIDHLLEYKPDQIELYNTRASHQQFASWFNQVKTEYDLNE
FT                   QQMGVVMNGFMVWCIENGTSPDINGVWVMMDGNEQVEYPLKPIVENAKPTLRQIMHHFS
FT                   DAAEAYIEMRNAEAPYMPRYGLLRNLRDRSLARYAFDFYEVNSKTPERAREAVAQMKAA
FT                   ALSNVSSRLFGLDGNVATTSEDTERHTARDVNRNMHTLLGVNTMQ"
FT   mat_peptide     <1. .495
FT                   /note="put. RNA polymerase"
FT   mat_peptide     496. .1332
FT                   /product="coat protein"
FT   misc_feature    619. .621
FT                   /note="conserved trypsin-resistant core protein start site"
FT   polyA_signal    1453. .1457
FT                   /note="putative"
FT   polyA_signal    1513. .1517
FT                   /note="putative"
XX
SQ   Sequence 1546 BP; 478 A; 300 C; 374 G; 394 T; 0 other;

d00692 Length: 1546  07-DEC-2007  Type: N  Check: 3296  ..

       1  gatctgatac ttgcagtcaa agatgaggat agcggcttac ttgataacat
      51  gtcatcctct ttttgcgaac ttggactgaa ttatgatttt tcagaacgta
     101  cgcataaaag agaagatctt tggtttatgt cccaccaagc aatgctagtt
     151  gatggaatgt acattccaaa actcgagaaa gagagaattg tttcaattct
     201  agagtgggat agaagcaaag aaattatgca ccgaacagag gctatttgcg
     251  ctgcgatgat tgaggcatgg gggcacaccg agctcttgca agaaatcaga
     301  aagttttacc tatggttcgt tgaaaaagaa gaagtgcgag aattggcagc
     351  cctcggaaaa gctccataca tagctgagac agcacttcgt aagttatata
     401  ctgacaaggg agcacataaa agtgaactgg cacgctacct acaagccctc
     451  catcaagaca tcttctttga acaaggagac actgtgatgc tccaatcagg
     501  cactcagcca actgtgtcag atgctggagc tacaaagaaa gacaaagaag
     551  atgacaaagg gaaaaacaag gacgttacag gctccggctc aggtgagaaa
     601  acagtagcag ctgtcacgaa ggacaaggat gtgaatgctg gttctcatgg
     651  gaaaattgtg ccgcgtcttt cgaagatcac aaagaaaatg tcattgccac
     701  gcgtgaaagg aaatgtgata ctcgatattg atcatttgct ggaatataaa
     751  ccggatcaaa ttgagttata taacacacga gcgtctcatc agcagttcgc
     801  ctcttggttc aaccaggtta agacggaata tgatttgaac gagcaacaga
     851  tgggagttgt aatgaatggt ttcatggttt ggtgcattga aaatggcact
     901  tcacccgaca ttaatggagt gtgggttatg atggacggaa atgagcaagt
     951  tgagtatccc ttgaaaccaa tagttgaaaa tgcaaagcca acgctgcggc
    1001  aaataatgca tcatttttca gatgcagcgg aggcatatat agagatgaga
    1051  aatgcagagg caccatacat gccgaggtat ggtttgcttc gaaacctacg
    1101  ggataggagt ttagcacgat atgctttcga tttctatgaa gtcaattcta
    1151  aaactcctga aagagcccgc gaagctgttg cgcagatgaa agcagcagct
    1201  cttagcaatg tttcttcaag gttgtttggc cttgatggaa atgttgccac
    1251  cactagcgaa gacactgaac ggcacactgc acgtgatgtt aatagaaaca
    1301  tgcacacctt actaggtgtg aatacaatgc agtaaagggt aggccgccta
    1351  cctaggttat tgtttcgctg ccgacgtaat tctaatattt accgctttat
    1401  ttgatatctt tagatttcca gagtgggcct cccaccttta aagcgtaaag
    1451  tttatgttag ttgtccagga gtgccgtagt cctttcggaa gctttagtgt
    1501  gagcctctca cgaataagct cgagattaga ctccgtttgc aagcct