Sequence of DPV Rice tungro bacilliform virus
Rice tungro bacilliform virus DNA, complete genome.
ACC No: D10774
Dated: 2001-11-13 | Length: 8002 | CRC: -1734058871
!!NA_SEQUENCE 1.0
ID RTBWG standard; circular DNA; VRL; 8002 BP.
XX
AC D10774; D01028; D01149; D10236;
XX
SV D10774.1
XX
DT 15-AUG-1992 (Rel. 33, Created)
DT 13-NOV-2001 (Rel. 69, Last updated, Version 7)
XX
DE Rice tungro bacilliform virus whole genome.
XX
KW .
XX
OS Rice tungro bacilliform virus
OC Viruses; Retroid viruses.
XX
RN [1]
RP 1-8002
RA Omura T.;
RT ;
RL Submitted (03-SEP-1991) to the EMBL/GenBank/DDBJ databases.
RL Toshihiro Omura, National Agriculture Research Center, Plant Protection;
RL Kannonndai 3-1-1, Tsukuba, Ibaraki 305, Japan
RL (E-mail:toomura@narc.affrc.go.jp, Tel:0298-38-8932, Fax:0298-38-8929)
XX
RN [2]
RA Kano H., Koizumi M., Noda H., Hibino H., Ishikawa K., Omura T.,
RA Cabauatan P.Q., Koganezawa H.;
RT "Nucleotide sequence of capsid protein gene of rice tungro bacilliform
RT virus";
RL Unpublished.
XX
RN [3]
RP 1-8002
RX MEDLINE; 92238849.
RA Kano H., Koizumi M., Noda H., Hibino H., Ishikawa K., Omura T.,
RA Cabauatan P.Q., Koganezawa H.;
RT "Nucleotide sequence of capsid protein gene of rice tungro bacilliform
RT virus";
RL Arch. Virol. 124:157-163(1992).
XX
DR SPTREMBL; Q86365; Q86365.
DR SPTREMBL; Q86366; Q86366.
DR SPTREMBL; Q86367; Q86367.
XX
CC Submitted (03-SEP-1991) to DDBJ by:
CC Toshihiro Omura
CC National Agriculture Research Center
CC Ttukuba, Ibaraki 305
CC Japan
CC Phone: 0298-38-8932
CC Fax: 0298-38-8929
XX
FH Key Location/Qualifiers
FH
FT source 1. .8002
FT /db_xref="taxon:10654"
FT /sequenced_mol="DNA"
FT /organism="Rice tungro bacilliform virus"
FT tRNA 1. .19
FT /product="tRNA-Met"
FT CDS <69. .668
FT /codon_start=1
FT /db_xref="SPTREMBL:Q86365"
FT /product="24K polypeptide"
FT /protein_id="BAA01605.1"
FT /translation="VPKRDLISQNIESRYEKLEFLDLAVWGKEKKQKYLLSTDNISFYC
FT YFDTSKTSESERKHTFHSDNKQLNSIVDLIIKHSEKTKNIKEELEKYSQFLDKILDLKP
FT TKKQVEKLLENQNLISKNFDYIKEQNTQLEKSLRKTVKLEDSINTLLVEIQQARPKEVE
FT LRTLKIAEQNSKAIEKFEQEIKDLRGILEYLKHQAT"
FT CDS 665. .997
FT /codon_start=1
FT /product="12K polypeptide"
FT /protein_id="BAA01606.1"
FT /translation="MSADYPTFKEALEKFKNLESDTAGKDKFNWVFTLENIKSAADVNL
FT ASKGLVQLYALQEIDKKINNLTTQVSKLPTTSGSSSAGAIVPAGSNTQGQYKAPPKKGI
FT KRKYPA"
FT CDS 994. .6021
FT /codon_start=1
FT /db_xref="SPTREMBL:Q86366"
FT /product="194K polypeptide"
FT /protein_id="BAA01607.1"
FT /translation="MNIRPFTGTSRTITQDSTSESNIKKGKNSTKRELIEEVDVNQEVE
FT NFDWKKLSGIKPNKLYEKNWQEKVKLKQQSIVSAYKEEAISVTHNAYTTTLFPQEVIKN
FT VKNQGKLYYHIGMMAIGVKGLHRRKIGTKVMIMFYDDSFGKAREASIGSIEMDMNAGCG
FT VFYSCPDFAKYIKDLSHLKIGIQTLGYENYEGKNLSVAIKTIGRLTTNIQSKYKINVKD
FT IVEQISSQGIIMVAPMEIDSSHLDGNEWDLSKFLNHENTSRVPTKALIYQNLQGGESLR
FT FSNYKQTRMHDPTENNSDEDEDLKILGEQLNIKMARFYTMQTPEEELREVIQQLEREKQ
FT AMIAKLEAKMKESSKMAIVEDNFNPNNEYLEDTYSEYEDLEFEKLGLTGWEDLDQDSIE
FT TEEITEWENPNQVLHREIRAYKSVSEQIEDIFGELLKEHGNYDMALKNLEEKYDLDKIE
FT KAKSIEEIAKSSTSSEIRPTKRPKEEQTAYEDDMRDDWKRKELTVNPIEASKDRNFERI
FT GSTYKKNFYPSRSEILNLDNVPPQFYYDQLVTWEGIVKNEWEARKKDGMDMWSWMDGRI
FT TGLVLYLVQDWISKNQAAYNDIKSRGDRPENFVKMVKDRFLIEDPTDERRTALQRLAQR
FT ELEALNCEDPTKIQPFMAEYLKKASEAKKGFDVVYVERLFDRLPEAVGKVVKADFVKDG
FT NSYEAGIGIAVSYISTWMRAKCIKETEAKTQKKASLAFCRSIYTIGDYKKRKILKRVTN
FT YNKNRRKNYVRRPSIKKKCRCYICQDENHLANRCPRRYTNQARASLIDGLDEDIVSIAS
FT DDEDIENFLEIIELDEFIAHSSQEHEHTWEIGGKKDKVCEICSYFTDYNKTVSCKTCET
FT QYCKTCSDQLALEVTEVKKPTKEETMISDLKLNVKNLEFRVTILEHKVEMQNLQDKFET
FT MQIRNKSEITEIPTTSLAMRANESNYIKTSINKTAGCYVETKISFNNENRIITALIDSG
FT STHNIICPTLIPASWINTTHREIIMFAVDNSKYNLNQELIDDIKLQFQEVDETFGIKYK
FT LGQTYVAPQPTKTFIIGHRFLTNENGSVTIHKDYITIQKTTGIYPTARHELKSEFARKH
FT GGRPPLFSNIPEIYNKIPQLHSYQPQPILGYKNEIGNQSLLTMVKELEALGFIGDDITK
FT NRTTWVCDFKIINPDINITCATIPYTPADKEVFEKQIKELLDNKLIKKADPTCRHRTAA
FT FIVRNHSEEVAQKPRIVYNYKRLNDNMHTDPFNIPHKISMINLIQKANIFSKFDLKAGF
FT HHMKLKDDFKDWTTFTCSEGLYTWNVCPFGIANAPCAFQRFMQESFGDLKFALLYIDDI
FT LIASNNEKEHIEHLKIFFNRVKEVGCVLSKKKSKMFLKEVEYLGVEIKEGKISLQPHIV
FT NKIKKFDKNKLNTLKGLQAYLGLLNYARGYIKDLSKLVGPLYKKTGKNGQRIFNKEDWN
FT IIFKIEREVSKIKPLERPKETDYIIIETDASEEGWGAVLVCKPDKYSGKDTEKIAGYAS
FT GNFGEKKTWTSLDYEIEAINEALNKFQIYLDKDFTIRTDCEAIVKGIKTEDYKKRSKTR
FT WIKLRDNLLKDGYKPTFEHIKGNKNFLPNFLSREGDFILKYLQNPDSTESYSIDSSESI
FT PLYIDSKESHSIESDDSIPLYRDKLLPLVERLKEKSA"
FT CAAT_signal 1950. .1955
FT CAAT_signal 2612. .2617
FT TATA_signal 3859. .3865
FT TATA_signal 4237. .4243
FT CDS 6042. .7211
FT /codon_start=1
FT /db_xref="SPTREMBL:Q86367"
FT /product="46K polypeptide"
FT /protein_id="BAA01608.1"
FT /translation="MNIEYPYSIHIIDKNKVPIYDQGNLFHTEKSARLSHVSRGLLDHL
FT FTFSSDNTERVRKLHILADYLYLLESERESYKNEWISLNDQVSLLQKQNSELRARIATN
FT KEIIEGLREPVKKPIYTTQDKERLRVFFCEERSMEYIYYHIKRLAQQSYYSHLNKLQKD
FT CEPFRGVYMSFLTNVKFLVLCEAGYWTVPDIETNTTESLLSLSQKKGEDLLQKGVVIFN
FT ELEGGYQLSPRFIGDLYAHGFIKQINFTTKVPEGLPPIIAEKLQDYKFPGSNTVLIERE
FT IPRWNFNEMKRETQMRTNLYIFKNYRCFYGYSPLRPYEPITPEEFGFDYYSWDNMVDED
FT EGEIVYISKYTKIIKVTKEHAWAWPEHDGDTMSCTTSIEDEWIHRMDNA"
FT enhancer 6278. .6284
FT CAAT_signal 7151. .7156
FT TATA_signal 7373. .7379
FT polyA_signal 7598. .7603
FT enhancer 7881. .7887
XX
SQ Sequence 8002 BP; 3271 A; 1244 C; 1440 G; 2047 T; 0 other;
D10774 Length: 8002 December 21, 2001 15:43 Type: N Check: 7836 ..
1 tggtatcaga gcgatgttcg aactttaagg gaaaaataga atacaatcta
51 gtcaaactaa ttacataagt tccgaagagg gatcttattt ctcaaaatat
101 tgagtcacgt tacgaaaaac ttgaattctt agacttagca gtctggggaa
151 aagagaaaaa acaaaaatat ttactatcta ccgataatat tagcttttat
201 tgttactttg atactagtaa aactagtgaa tcagaaagaa agcatacctt
251 tcattctgat aataagcaac tcaatagtat tgtagacctt attattaagc
301 attctgaaaa aaccaaaaat attaaggaag aattagaaaa atatagtcag
351 ttcctagata agattttaga tctaaagcct actaaaaaac aagtcgaaaa
401 actattagaa aatcaaaact taattagcaa gaactttgat tatatcaaag
451 aacaaaacac tcaactagaa aaatccctaa gaaaaacagt taagttagaa
501 gactccatta atactctatt agtagaaata caacaagcta gacctaagga
551 agtagaatta agaactctta agatagcaga acaaaactct aaagcaatag
601 aaaaatttga gcaagaaatt aaggatctaa gaggaatctt agaatacctt
651 aagcatcaag ctacatgagc gctgattatc caactttcaa ggaagccctt
701 gaaaagttta aaaacctaga atcagataca gccggaaaag ataagtttaa
751 ttgggtattt actctagaaa atataaagtc agctgcggac gtaaatttag
801 catctaaggg tttagtacaa ctttatgctt tacaagaaat tgataaaaag
851 attaataatc ttacaaccca agttagtaag ttacctacaa ctagtggaag
901 tagttcagca ggagctatag tacctgcagg tagtaacacc caaggtcagt
951 acaaagcacc acctaagaaa ggaattaaga gaaaatatcc agcatgaata
1001 ttagaccatt tactggtact tctagaacta taacccaaga ttcaacctct
1051 gaatctaata taaaaaaggg aaaaaactca acaaaaagag aattaataga
1101 agaagtagat gttaatcaag aagtagaaaa ctttgattgg aaaaaactat
1151 caggaattaa acctaataaa ctatatgaga aaaattggca agaaaaagtt
1201 aagttaaaac aacaatctat agtttcagca tataaagaag aagctattag
1251 tgtaactcat aatgcatata ctactacttt atttccacaa gaagtaatta
1301 aaaatgttaa gaatcaggga aaactttatt atcatatagg catgatggcc
1351 ataggagtta aaggacttca tagaagaaaa ataggaacta aagtcatgat
1401 aatgttttat gatgatagtt tcggtaaagc tagggaagct agcattggat
1451 cgatagaaat ggatatgaac gccggttgtg gagtgttcta ctcctgccct
1501 gactttgcaa aatatattaa agatttatca caccttaaga tagggataca
1551 aaccctagga tatgaaaatt atgaaggaaa aaacctttcg gtagcaatca
1601 aaactatagg aagattgacc accaatatac agtcaaaata taagataaat
1651 gtgaaagata ttgtagaaca gatatcatca caaggaatca ttatggtagc
1701 acccatggaa atagattcat cacacctaga tgggaatgaa tgggatctta
1751 gtaaattctt aaaccatgaa aacacaagta gagtcccaac caaagcccta
1801 atatatcaga atctacaagg aggagaatcc ttaagatttt caaattataa
1851 gcaaactaga atgcatgatc ctactgaaaa caattcagat gaagatgaag
1901 atttaaaaat cttaggagaa caactaaata ttaaaatggc aagattttac
1951 acaatgcaaa ccccagaaga agaattacga gaagtaattc aacaattaga
2001 aagagaaaaa caagccatga tagcaaaact agaagctaaa atgaaagagt
2051 catctaaaat ggcaatagta gaagataatt tcaatccaaa taacgaatat
2101 ctagaagata catattctga atatgaagat ctagaattcg agaaattagg
2151 attaactgga tgggaagact tagatcagga ttccatagaa accgaagaaa
2201 taactgaatg ggaaaatcct aatcaagtac ttcatagaga aattagagca
2251 tataaatcag tatctgaaca aatagaagat atatttggag aactattaaa
2301 agaacacgga aactatgata tggcccttaa aaacctagaa gaaaaatacg
2351 acttagataa aatagaaaag gccaaatcta tagaagaaat agctaaatca
2401 tctacatcat cagaaattag gccaaccaaa agacctaaag aagaacaaac
2451 agcctatgaa gatgatatga gagatgattg gaaaagaaaa gaattaacag
2501 taaatcctat agaagcctca aaagatagaa attttgaaag aataggaagt
2551 acatataaga aaaactttta ccctagtaga agtgaaatat taaacttaga
2601 taacgttccc ccacaatttt actatgacca gctagtaacc tgggaaggaa
2651 tagttaaaaa tgaatgggaa gcacgtaaga aagatgggat ggatatgtgg
2701 tcttggatgg atggtagaat aacaggatta gtgttatatt tagtccaaga
2751 ttggatatct aaaaatcagg cagcctataa tgatataaaa tctagaggtg
2801 atagacctga aaacttcgta aaaatggtaa aagataggtt cttaatagaa
2851 gatcctacag atgaaagaag aacagcatta caaaggttag cacaaagaga
2901 attagaagcc ttaaactgcg aagatcctac taaaattcaa ccatttatgg
2951 ctgaatatct taagaaagca tcagaagcca aaaaaggatt tgatgtagtt
3001 tatgtagaaa gactctttga tagactacca gaagcagtag gaaaggtagt
3051 aaaagcggac tttgtcaaag acggtaattc ctatgaagca ggaataggaa
3101 tagcagtttc atatatatct acatggatga gagcaaaatg cattaaggaa
3151 acagaagcta aaactcaaaa gaaagcatcc ttagcattct gtagatccat
3201 atatactata ggagattata agaaacgaaa aatcctaaaa agagttacaa
3251 actataataa aaataggaga aaaaactatg tcagaagacc tagcattaag
3301 aaaaaatgca gatgttatat ctgtcaagat gaaaaccacc tagctaatag
3351 atgtcctaga agatatacta atcaggctag agcaagtcta atagatggat
3401 tagacgaaga tatagtatct atagcatcag atgacgagga tattgaaaat
3451 ttccttgaaa taatagaact tgatgaattt atagcacatt ctagtcaaga
3501 acatgaacat acatgggaaa tcggaggaaa gaaagataag gtatgtgaaa
3551 tttgcagtta ttttacggat tataataaaa ctgttagctg caaaacctgt
3601 gaaacccaat actgcaaaac atgttctgat caactagcac tagaagtaac
3651 agaagtcaaa aaacctacaa aagaagaaac aatgataagc gacctaaaat
3701 taaatgttaa aaatctagaa tttagagtca ccattctaga acataaggta
3751 gaaatgcaga atcttcaaga taaattcgaa actatgcaaa ttagaaataa
3801 atcagaaata acagaaatac caacaacctc attagctatg agagcaaatg
3851 aatcaaatta tataaaaaca tcaattaata aaactgcagg atgttatgta
3901 gaaacaaaaa tttcatttaa caatgaaaac agaatcataa cagccctaat
3951 agactcagga tcaacacata atataatatg tccaacattg ataccagcat
4001 catggattaa tactacacat agagaaatta taatgtttgc tgtagataat
4051 agcaaatata atctgaatca agaattaata gatgatatca aattacaatt
4101 ccaagaagtt gatgaaactt ttggaataaa atataaatta ggacaaacct
4151 atgtagcacc tcagccaaca aaaacattta taataggaca cagattcctt
4201 acaaatgaaa atggtagtgt tacaatccat aaagattata taactataca
4251 aaaaactaca ggaatatacc caacagccag acacgaactt aaatcagagt
4301 ttgcgcgaaa gcatggtgga cgcccgccat tattttcaaa cattcctgaa
4351 atctataaca aaattcctca gttgcattca tatcagcctc aaccaatatt
4401 aggatataag aatgaaatag gaaatcaaag tttactcact atggtgaaag
4451 aattagaagc acttggattc ataggagatg acattactaa aaacagaaca
4501 acgtgggtat gtgacttcaa aatcataaac ccagatatta atataacttg
4551 tgcaacaatt ccatacacac cagcagataa agaagtattt gaaaaacaaa
4601 ttaaagaact actagataat aagttaatca agaaagctga tccaacatgc
4651 aggcatagaa cagcagcatt tatagtaaga aaccattctg aagaagtagc
4701 tcagaaacct cgaatagtct ataactataa acgtttgaat gataatatgc
4751 atacagatcc ttttaatatt cctcataaga tttcaatgat taatctaata
4801 cagaaagcta atatattttc taagtttgat ttaaaagcag gatttcatca
4851 tatgaaatta aaagatgatt tcaaagattg gactactttt acatgctcag
4901 aaggattata tacttggaac gtctgtccat ttggtatagc taacgcccct
4951 tgtgcatttc aaagatttat gcaggaatcc tttggagatt taaagtttgc
5001 attattatat atagatgaca tacttattgc atctaataac gaaaaagagc
5051 atatagaaca tcttaagatt ttctttaata gagtaaaaga agtaggatgt
5101 gttcttagta agaaaaaatc aaaaatgttt cttaaagaag tagaatatct
5151 tggagtagaa attaaagaag gaaagattag tcttcagccg catatagtta
5201 ataagatcaa aaaatttgat aaaaataaac tcaacaccct aaagggacta
5251 caagcatatc tagggttact caattatgcc agaggataca tcaaagacct
5301 atcaaagcta gtaggaccac tttataaaaa gacaggaaaa aatgggcaaa
5351 gaatctttaa caaagaagat tggaatatca tctttaagat agaaagagag
5401 gtatcaaaga taaagccttt agaaagacct aaagaaaccg actacatcat
5451 tatagagaca gatgcgtcag aagaaggctg gggagcagtc ttagtctgta
5501 agccagataa atatagtggc aaggacactg agaaaatagc agggtatgca
5551 tcaggaaact ttggagagaa gaaaacctgg actagtttag attatgaaat
5601 agaagctata aatgaagccc taaacaagtt ccagatatac ttagacaaag
5651 attttacaat cagaactgat tgtgaagcaa tagtgaaagg gataaaaaca
5701 gaagattata aaaagagatc aaaaaccaga tggattaagt taagagataa
5751 cctcttaaaa gatggataca agcctacctt tgagcatatc aagggaaaca
5801 aaaacttttt accaaacttc ttatcccgtg agggagattt tattttaaaa
5851 tatcttcaaa accccgattc tacggaatca tattctatag attcgtcaga
5901 atcaattcca ctatatatcg attcaaaaga atcacattct atagagtctg
5951 atgactcaat tccactatac agggacaagc ttcttcctct agtcgaaagg
6001 ctaaaggaaa agagtgccta actaaggtcg gaggcatcac catgaatata
6051 gagtacccgt actcaatcca cataatagac aagaacaagg ttccgatcta
6101 cgatcaagga aatctcttcc acactgagaa gtctgcaaga ctttcacatg
6151 tgtccagagg tttgctggat catctcttta ctttttcgtc tgataatact
6201 gagcgagtta ggaagctcca catattagcc gattatcttt acctattaga
6251 aagtgagaga gagtcatata aaaatgagtg gattagcttg aatgatcaag
6301 ttagtcttct acaaaaacaa aatagtgagt tgagagctag gatagccacc
6351 aacaaagaaa taatagaggg actgagagag ccagttaaaa agccaatata
6401 cacaacccag gataaagaga ggctccgtgt tttcttttgc gaagaaagaa
6451 gcatggaata tatatattat catataaaaa ggctagctca gcagagctat
6501 tattcccacc taaataaatt acagaaggat tgtgaaccct ttcgaggggt
6551 ctacatgtct ttcttaacta atgttaaatt cctagtatta tgtgaagctg
6601 gatactggac tgtaccagat atagaaacta atactacaga gtctttatta
6651 agtctatccc agaagaaagg agaagatctt ctacaaaagg gagtagtaat
6701 atttaatgag cttgaaggag gatatcagct ttctccaaga ttcattggag
6751 acctttatgc tcatggtttt attaaacaaa taaacttcac aaccaaggtt
6801 cctgaagggc taccgccaat catagcggaa aaacttcaag actataagtt
6851 tcccggatca aataccgtct taatagaacg agagattcct cgctggaact
6901 tcaatgaaat gaaaagagaa acacagatga ggaccaactt atatatcttc
6951 aagaattatc gctgtttcta tggctattca ccattaaggc catacgaacc
7001 tataactcct gaagaatttg ggtttgatta ctacagttgg gataatatgg
7051 ttgatgaaga cgaaggagaa attgtataca tctccaagta tactaagatt
7101 atcaaagtca ctaaagagca tgcatgggct tggccagaac atgatggaga
7151 cacaatgtcc tgcaccacat caatagaaga tgaatggatc catcgtatgg
7201 acaatgctta aagaagcttt atctaaagca actttaagta cgaatcaata
7251 aagaaggacc agaagatata aagcgggaac atcttcacat gctaccacat
7301 ggctagcatc tttactttag catctctatt attgtaagag tgtgtaatga
7351 ccagtgtgcc cctggactcc agtatataag gagcaccaga gtattgtaat
7401 agatcatcga tcaagcaagc gagagctcaa acttctaaga gagcaagaga
7451 ggagcttatc ctctcaaccc ctcttcaaga agcaaaggcg atcaatggct
7501 caggtcagtg agtagtcgtc tttaaggttc ctctaggaac ctctgtgtaa
7551 tatgtttgta cttatgattg tatttctcaa aacctatccg ctgcatgaat
7601 aaagctctta tatttatcct acacccttgt gataaaacat gaagtcatac
7651 tcgttctaag attaagtgtt ctaaaaaata cttcgaagca ttgaaaaggg
7701 ggctaaaggg ggaaaaagta ccgtcaggcc gtgttatggc aagggaagaa
7751 gtaccatgaa taccctatag atgttagaag gaagataaga actaagtatc
7801 ttatgaacaa tgggtagctg atttctgatt atcattaaca agtaccgtta
7851 taatccataa gctttgaaag atctgctagt gtggatacca aaaggctgtc
7901 gtggttcgcc cagtcgacgg atgaggtcat aaacgaagca ctagtaggta
7951 actaagaggc ttagggatga gcaacgagaa aagttagggg ggtgcctaga
8001 aa