Sequence of DPV Barley mild mosaic virus
Barley mild mosaic virus gene for polyprotein precursor, partial cds.
ACC No: D10949
Dated: 2003-07-07 | Length: 3945 | CRC: -2058800667
!!NA_SEQUENCE 1.0
ID BMMKA1 standard; RNA; VRL; 3945 BP.
XX
AC D10949;
XX
SV D10949.1
XX
DT 05-NOV-1992 (Rel. 33, Created)
DT 07-JUL-2003 (Rel. 76, Last updated, Version 8)
XX
DE Barley mild mosaic virus gene for polyprotein precursor, partial cds.
XX
KW .
XX
OS Barley mild mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Bymovirus.
XX
RN [1]
RP 1-3945
RA Kashiwazaki S.;
RT ;
RL Submitted (15-APR-1992) to the EMBL/GenBank/DDBJ databases.
RL Satoshi Kashiwazaki, Scottish Crop Research Institute, Virology Department;
RL Invergowrie, Dundee DD2 5DA, United Kingdom (E-mail:mail@scri.sari.ac.uk,
RL Tel:44-382-562731(ex.2125), Fax:44-382-562426)
XX
RN [2]
RX MEDLINE; 93019037.
RX PUBMED; 1402809.
RA Kashiwazaki S., Nomura K., Kuroda H., Ito K., Hibino H.;
RT "Sequence analysis of the 3'-terminal halves of RNA 1 of two strains of
RT barley mild mosaic virus";
RL J. Gen. Virol. 73:2173-2181(1992).
XX
DR GOA; O39510.
DR SPTREMBL; O39510; O39510.
XX
CC Sequence updated (08-Jan-1996) by: Satoshi Kashiwazaki
XX
FH Key Location/Qualifiers
FH
FT source 1. .3945
FT /db_xref="taxon:12466"
FT /mol_type="genomic RNA"
FT /note="clones Ka1SK11 and Ka1SK46"
FT /organism="Barley mild mosaic virus"
FT /strain="Ka1"
FT CDS <1. .3608
FT /citation=[2]
FT /codon_start=3
FT /db_xref="GOA:O39510"
FT /db_xref="SPTREMBL:O39510"
FT /note="capsid protein, possible polymerase and proteinase"
FT /product="polyprotein precursor"
FT /protein_id="BAA01742.1"
FT /translation="MVAALLMYLVFWVSPRKQDDITIEGKGRAYNRDKRMGYDSYEEDE
FT VRNKINKKFKERSTRFSNNSKPETSSKYRNLKQEFVNFYNLKTDANVLQAVFTAMDGAV
FT LLQTENPMADIGHVNRLLQDHFEDSESQAVHEGLNTMVKCHLTMKDGRQFELDMEQHDP
FT ETVAKLGGEVGFRMNRDDLRQVGATRYINPRAQTSAATLEGMTMKPMSSFTIDSAKMVG
FT FIKTAKDTLNCILYGDWIIAPAHTQQGEGDITFIFQHVQFTTTTERLASYGIRQFKGLD
FT LVVIRRPQQIRAVKKDMRASILDTPTEIQMLYLSTKGGKYQVSTSAVCFPHYNNRWGHV
FT ISTAEGMCGCIVFNPTTNHIVGIHVSYNDTRRRNEFQAFTSDVLTTINAPGHEIPFSPW
FT IFDWKFCGYTTKPRNMQSAPSTLERLNINATGFGFKLDAQEIKPAMLRSTESFSREFPD
FT TQFKLIGEVKKGLIDKHTITGENPYFLEFLNTFKPYQWVQAFMDEYAPSILAYDAYFKD
FT LKKYDRPPHANVFCQDTLTKAKHKMISILEEAGMGRTLVRTTEQVLLDMAWTTSGGPLY
FT HGKKIDIVQHLSDDELVQFSEACQQALITGTLDGVWNGSLKAELRSSQKILERKTRVFT
FT AAPITSLIAMKYYVDDFNKQFYKTHLKAPHTVGINKFNRGWQNLYEKLNKPGWTHGSGD
FT GSRFDSSIDGFLFDVIKDIRKHFMDTEHHKELDTIYEEIVNTKICLANGLVIQKNCGNN
FT SGQPSTVVDNTLALMTAFLYAYARLTGDHAFELMDENFVFVCNGDDNKFSMSPSFMAKF
FT GCDFSPFLSELGLTYEFDEATEDICENPYMSLTMVRTSFGIGFSLSIERIVAILQWSRA
FT GGVLHAYLSGIAALFESFNTPKLFNLVHTYLLWLVTEHEEELFSMMELKDMFMPLPTRE
FT QIALLHYVGTEPIVEETFLQAGHEEPDPIVPPVPDTDLTNMAAAPPDNRKSRAVIPRGT
FT SDWSLPEPKMRTLGFKSKINIETLANVPDGYMNTFASVATESQRRKWEEAARGDFGITD
FT DEKWEKLLIAACIYFADNGTSPNFDEELTMEVNGGLNSIKEYPVRPFVVRAKKISTLRR
FT IFRCYSIETKLMFVKLRRVPHWAIKHGCLDEIVFDFMIPDQFTSRTALETLKQTKLAAI
FT GVGTSNSLLTSEQTNMRTTETRRRNDYDGHEALLR"
FT 3'UTR 3606. .3945
FT polyA_signal 3860. .3864
XX
SQ Sequence 3945 BP; 1110 A; 1060 C; 891 G; 884 T; 0 other;
D10949 Length: 3945 July 15, 2003 09:15 Type: N Check: 5521 ..
1 ttatggttgc cgccttactc atgtatctcg ttttctgggt ttctcccagg
51 aaacaggacg acatcaccat tgaggggaaa ggcagggcat acaaccgtga
101 caagcgcatg gggtacgact cctacgagga agacgaagtt cgcaacaaga
151 tcaacaaaaa gttcaaagag cgcagcacaa ggttctccaa taactccaag
201 ccggaaacaa gctcgaaata ccgcaatctg aagcaagaat ttgttaactt
251 ctataatctc aaaaccgatg cgaacgtgct acaagccgtg ttcactgcaa
301 tggacggggc cgtccttctt caaaccgaaa atccaatggc agacattggc
351 catgtcaata gactgctgca ggaccacttt gaagacagtg agagccaagc
401 tgtgcatgag ggcctcaaca ccatggtcaa gtgccaccta actatgaaag
451 atggaagaca gtttgagctc gacatggaac aacacgatcc cgaaactgtc
501 gccaaacttg ggggcgaggt tggtttcaga atgaacagag acgacttacg
551 tcaagttgga gccacacgat acatcaaccc aagagcacaa acatctgcag
601 cgacgctcga aggcatgacc atgaaaccca tgagttcttt caccattgac
651 agcgcaaaga tggttggctt catcaagacc gcaaaagaca cactcaactg
701 catcctttac ggcgactgga ttatagctcc tgcgcacaca cagcagggcg
751 agggggacat aacattcatc ttccagcacg tacaattcac gaccacaact
801 gagcgtttag ctagctatgg cattcgacaa ttcaaaggtc ttgaccttgt
851 tgtcatccgg cgccctcagc agatacgcgc agtcaagaag gacatgcgtg
901 ctagcattct cgacacaccc actgaaatac aaatgctcta cttgtccact
951 aaaggtggta agtaccaagt gtccacgtcc gctgtgtgct ttccacacta
1001 caataaccga tggggacacg tcatttcaac agcagaaggc atgtgcggct
1051 gtattgtatt caaccccacc acgaaccaca tcgttggaat ccacgtctcc
1101 tacaacgaca cgcgcagaag aaatgagttt caagctttca caagtgacgt
1151 tctgacaacg attaatgcac ccggacacga gatacctttc agcccatgga
1201 tcttcgactg gaagttttgt gggtacacaa caaaaccacg aaacatgcaa
1251 agcgcaccga gcacactcga gcgactcaac atcaatgcca caggatttgg
1301 tttcaagctc gatgcacagg agattaagcc agccatgctt cgttccacag
1351 agtcgttctc cagggagttt ccagacacac agtttaaact cattggggaa
1401 gtgaagaaag gactcatcga caaacacaca atcacaggag agaacccata
1451 cttccttgaa ttcctgaaca cattcaaacc ataccaatgg gtgcaggcct
1501 tcatggacga gtacgcaccc tccatccttg cctatgacgc gtatttcaaa
1551 gatctgaaga aatatgatag gccaccacac gcaaatgttt tctgtcagga
1601 cacactaacc aaagctaaac ataagatgat cagcatcctc gaggaagcag
1651 gcatgggaag gaccctagta cgaaccaccg agcaggtctt gcttgacatg
1701 gcgtggacca cctccggtgg acccttgtac catggtaaga agatcgacat
1751 tgtgcaacac ttgtctgacg acgagcttgt acagttcagt gaggcctgcc
1801 aacaggctct tatcactgga acgctggatg gagtctggaa cggatcactc
1851 aaagccgagc tgcgctcttc gcagaaaatc ctcgaacgga aaacccgcgt
1901 ttttactgct gcacccataa caagcctcat tgcgatgaaa tactatgtgg
1951 atgatttcaa caaacagttc tataaaaccc atctcaaagc accgcacaca
2001 gtcggaatca acaagttcaa ccgcggatgg cagaatctgt atgagaagct
2051 caacaaaccc ggatggacgc atgggagtgg ggacggttcc aggtttgaca
2101 gttccattga tggattcctt ttcgatgtca tcaaggacat tcgaaagcat
2151 ttcatggaca cggaacacca caaagaactc gacacaatct acgaagagat
2201 agtcaacacg aagatatgtc tggcgaacgg cctggtcatt cagaagaatt
2251 gcgggaacaa cagtgggcag ccaagcactg ttgtggacaa cacactcgca
2301 ctcatgacag cttttctcta cgcatatgcc cggctcactg gagatcacgc
2351 cttcgaactc atggacgaaa acttcgtctt cgtctgcaat ggtgatgaca
2401 acaagttttc catgtcacct agcttcatgg cgaagtttgg atgcgatttc
2451 tccccattcc tctctgagct cgggctaacc tacgaatttg atgaagcaac
2501 tgaagatatc tgcgaaaacc cctacatgtc cttgacgatg gtccgcacct
2551 cgtttgggat tggtttctct ctctccattg agcgcatcgt tgcaatcttg
2601 cagtggagtc gcgccggtgg agtcctgcat gcctatctct ctggcattgc
2651 cgctcttttc gaatctttca acacacccaa actcttcaat ctcgtgcaca
2701 catatctcct ttggctcgtc acagagcacg aggaggaact cttctccatg
2751 atggaactca aagacatgtt catgcccttg cccactaggg aacagatagc
2801 cttgctgcac tacgttggaa ctgagcccat cgtggaggaa acatttctgc
2851 aagcaggaca cgaagaacca gaccccatcg ttcccccagt tcctgacacc
2901 gatctaacga acatggctgc cgcaccaccc gacaacagaa agtcgcgcgc
2951 cgtcatcccc cgtgggacca gtgactggag cctgcctgaa cccaaaatgc
3001 gaacactggg tttcaagtcc aagatcaaca tcgaaacact tgccaatgtc
3051 cccgacgggt atatgaacac ctttgcatcc gttgcaactg aatcgcaacg
3101 taggaaatgg gaggaggccg cacgtggcga tttcggcatc actgacgatg
3151 agaaatggga gaagttgctc attgctgctt gtatatattt cgcagacaat
3201 ggcacctcac cgaatttcga cgaggaactc actatggagg ttaatggcgg
3251 tctcaactcc atcaaagagt accccgttcg cccctttgtc gttagagcca
3301 aaaagatttc cacgctgcgc agaatctttc gctgttactc catcgaaacg
3351 aagctcatgt tcgtgaagct gaggcgcgtg ccacactggg ccataaagca
3401 cggatgcctc gatgagatcg tctttgattt catgatcccc gaccagttca
3451 cctctaggac tgcgcttgaa acactgaagc agaccaaact ggctgccatt
3501 ggtgttggca caagcaattc tctcctcacc tccgagcaga cgaacatgag
3551 gaccactgaa acccgacggc gcaatgacta cgatggtcac gaggcgctcc
3601 tccggtagat ctctcatgca cttgcatttc cttttaagca atgcatttca
3651 atacgctttt aattatatca agcgtcaaga atttctcccg cttgcagtta
3701 atccttatag ggtggcactt tgtgttatgc aatggaaaat tcagtgacgc
3751 aatcaaccat cattggttgg tgacaacgca gtactttctt tatttcacat
3801 caagcgacca gcacatcgcc cgcttacagc taatcctacc tgagggtggc
3851 actctgtgtt atgtaatgga atgtgcaatc tcgcaaccaa ccgtcattgg
3901 ttgatggtgc ggccaacacc cgcactcttg tataccggaa aggtt