Sequence of DPV Barley yellow dwarf virus-MAV
Barley yellow dwarf virus (ISOLATE MAV-PS1) genomic RNA, complete sequence.
ACC No: D11028
Dated: 2003-07-07 | Length: 5273 | CRC: 617281535
!!NA_SEQUENCE 1.0
ID BYDMAV standard; RNA; VRL; 5273 BP.
XX
AC D11028; D01213;
XX
SV D11028.1
XX
DT 07-MAY-1992 (Rel. 31, Created)
DT 07-JUL-2003 (Rel. 76, Last updated, Version 11)
XX
DE Barley yellow dwarf virus (ISOLATE MAV-PS1) genomic RNA, complete sequence.
XX
KW .
XX
OS Barley yellow dwarf virus (ISOLATE MAV-PS1)
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus; Barley yellow dwarf virus - MAV.
XX
RN [1]
RX MEDLINE; 91108372.
RX PUBMED; 2273382.
RA Vincent J.R., Ueng P.P., Lister R.M., Larkins B.A.;
RT "Nucleotide sequences of coat protein genes for three isolates of barley
RT yellow dwarf virus and their relationships to other luteovirus coat protein
RT sequences";
RL J. Gen. Virol. 71:2791-2799(1990).
XX
RN [2]
RP 1-5273
RX MEDLINE; 92166764.
RX PUBMED; 1538199.
RA Ueng P.P., Vincent J.R., Kawata E.E., Lei C., Lister R.M., Larkins B.A.;
RT "Nucleotide sequence analysis of the genomes of the MAV-PS1 and P-PAV
RT isolates of barley yellow dwarf virus";
RL J. Gen. Virol. 73:487-492(1992).
XX
DR GOA; P29044.
DR GOA; Q00010.
DR GOA; Q65871.
DR GOA; Q65872.
DR SPTREMBL; Q65871; Q65871.
DR SPTREMBL; Q65872; Q65872.
DR SPTREMBL; Q65873; Q65873.
DR SWISS-PROT; P29044; RRPO_BYDV1.
DR SWISS-PROT; P29046; VPG_BYDV1.
DR SWISS-PROT; Q00010; COAT_BYDV1.
XX
FH Key Location/Qualifiers
FH
FT source 1. .5273
FT /db_xref="taxon:31723"
FT /mol_type="genomic RNA"
FT /organism="Barley yellow dwarf virus (ISOLATE MAV-PS1)"
FT /isolate="P-PAV"
FT /serotype="MAV"
FT CDS 106. .1125
FT /codon_start=1
FT /db_xref="GOA:P29044"
FT /db_xref="SWISS-PROT:P29044"
FT /evidence=NOT_EXPERIMENTAL
FT /product="ORF1"
FT /protein_id="BAA01779.1"
FT /translation="MFFEILIGASTKAVKDFISHCYSRLKSIYYCFKRWLMEISGQFKA
FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDF
FT FTKSRGGVYAPLSCEPTRQDLEVKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFINCWN
FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKEVVKE
FT RNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETIKLKNSTLNADELSLATIARYVE
FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGF"
FT CDS <1110. .2708
FT /codon_start=1
FT /db_xref="GOA:Q65871"
FT /db_xref="SPTREMBL:Q65871"
FT /evidence=NOT_EXPERIMENTAL
FT /product="ORF2"
FT /protein_id="BAA01780.1"
FT /translation="LCGFLEGLCTASGFESPFPILGLPEIAVTDGARLRKVSCNIRYLS
FT QTHLGLVYKAPNASLHNALVAVERRVYTVGKGDKAIYPPRPEHDIFTDTMDYFQKSIIE
FT EVGYCKTYPAQLLANSYSAGKRAMYHKAIASLRTIPYHQKDANVQAFLKKEKHWMTKDI
FT APRLICPRSKRYNIILGTRLKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQK
FT FACPVAIGVDASRFDQHVSEQALKWEHGIYNGVFGDSELALALEHQITNNIKMFVEDKM
FT LRFKVRGHRMSGDINTSMGNKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITDRANEKL
FT FDGMYDHFLRYGFNMVTEKPVYELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLS
FT MLNQSDVKSYMSAVAQCGLVLNAGVPILESFYKCLYRSSGYKKVSEEFIKNVISYGTDE
FT RLQGRRTFQDTPITNHSRMSYWESFGVDPKIQQIVERYYDNLTVSAQLQSVKVTTPHLQ
FT SILLSIPENHSHNEY"
FT CDS 2822. .3421
FT /citation=[1]
FT /codon_start=1
FT /db_xref="GOA:Q00010"
FT /db_xref="SWISS-PROT:Q00010"
FT /evidence=NOT_EXPERIMENTAL
FT /note="ORF3"
FT /product="viral coat protein"
FT /protein_id="BAA01781.1"
FT /translation="MNSVGRRNNRRRNGPRRARRVSAVRRMVVVQPNRAGPKRRARRRT
FT RGGGANLISGPAGRTEVFVFSVNDLKANSSGTIKFGPDLSQCPALSGGILKSYHLYKIT
FT NVKVEFKSHASASTVGAMFIELDTWCSQSTLGSYINSFTISKSATKTFTAQQIDGKEFR
FT ESTVNQFYMLYKANGSTSDTAGQFIITIRVANMTPK"
FT CDS 2859. .3323
FT /citation=[1]
FT /codon_start=1
FT /db_xref="SWISS-PROT:P29046"
FT /evidence=NOT_EXPERIMENTAL
FT /product="ORF4"
FT /protein_id="BAA01782.1"
FT /translation="MAQGEQGALAQFGEWLWSNPIEPDQNDELVDAQEEEGQILYLDQQ
FT AGLRYSYSQSTTLRPTPQGQSSSVPTFRNAQRFQVEYSSPTTFTRSQTSRLSLSHTRPP
FT LQSAQCLLNSTLGAHNQPWVATLTHSPSQNQQPKPSPPNRLTGRNSGRVR"
FT CDS <3422. .4795
FT /codon_start=1
FT /db_xref="GOA:Q65872"
FT /db_xref="SPTREMBL:Q65872"
FT /evidence=NOT_EXPERIMENTAL
FT /product="ORF5"
FT /protein_id="BAA01783.1"
FT /translation="VDSSTPEPSPQPQPEPKPDPQPTPEPRQKRFFEYVGTPYVVIQTR
FT ESSDSIAVKAMNDQSFQYIENETSEQRTVKAWWNSNNSVQAQAAFIFPIPAGEYSVNIS
FT CEGLQSVDHIGGNRDGYWIGLIAYQSQSGDYWGVGNYVGCDITNLLGTNTWRPGHEDLE
FT LNSCKFTDGQIVERDAVISFHVKARGADPKFYLMAPKTMKADKYNYVVSYGGYTDKRME
FT FGTISVTVDESDVEAERYSRHTSTVRRTENRDYGWMNVLPPYNPDQVPEQEDEQPVVDK
FT EMDAGSPIDTASLTSDTEAEKAFDLKEEELTRAILEYEAATVSIPDAAPDILPSKSEMS
FT SKPIDRDGRSLPKSQTKEVLGTYQGQNITSDDVPPVIAEKLREVNRAPSTLLYDRQPKQ
FT PKNPLTRFVLSNKTSTASPGSQSSTAGMTREQASEYTRIRKSLGLTAAKQYKASLDDT"
FT CDS 4905. .5036
FT /codon_start=1
FT /db_xref="SPTREMBL:Q65873"
FT /product="ORF6"
FT /protein_id="BAA01784.1"
FT /translation="MDDLHVIAVCVLSTTVFAGFVLTIGAAASLCGCVYSTVYNTKV"
XX
SQ Sequence 5273 BP; 1578 A; 1243 C; 1275 G; 1177 T; 0 other;
D11028 Length: 5273 July 15, 2003 09:12 Type: N Check: 376 ..
1 cttgtaacac actacacact cgttttgtat tcgagaagta gttgcaacaa
51 cggtcccctt attgcctgac tagctgaggg ccacccttct atccccaccg
101 ccatcatgtt cttcgaaata ctcataggag ctagcactaa ggcggttaaa
151 gacttcatca gtcattgtta ctctcgtttg aaatctatat attattgttt
201 caaacgatgg ctgatggaga tatctgggca gtttaaggcc catgacgcct
251 ttgtcaacat gtgcttcggg catatggctg acattgagga cttcgaggca
301 gagctcgctg aggagtttgc cgagagggag gatgaggtgg aagaggcaag
351 gagcctcttg aaactgctgg ttgcccaaaa atctaaaact ggggtgaccg
401 aggcttggac cgacttcttt acgaagtcga gaggtggcgt ctacgcgcca
451 ctttcctgtg agcctaccag gcaggaccta gaagtcaaga gcgagaagct
501 cgaaaaactt ctagaagaac agcaccaatt tgaggtgcga gcggccaaga
551 aatacatcaa ggaaaagggc cgcggcttca tcaactgttg gaacgacttg
601 agaagtcgtc tcaggctggt gaaggacgtc aaggacgagg cgaaggacaa
651 tgccagagct gctgccaaaa tcggagcaga aatgttcgcc cccgttgacg
701 tgcaggacct ctacagcttt acagaggtca aaaaggtgga gaccggcctc
751 atgaaggagg tcgtaaaaga gagaaacggc gaagaagaga aacacctcga
801 gcccatcatg gaagaggtga gatctatcaa ggataccgcc gaagccaggg
851 atgccgcctc cacctggatt acagagacaa ttaagctgaa gaactcaacg
901 cttaacgcag atgaattgtc tctagccacc atcgcccgct acgttgaaaa
951 cgtaggggac aaattcaaac tcgacattgc tagcaagaca tatttaaagc
1001 aagtcgcatc gatgtctgtg ccaattccaa ccaacaagga catcaaattg
1051 aagatggtgc tgcagagtcc tgaagcacgt gccaggcggg aacgcatgga
1101 cgtgcttgac tctgtgggtt tttagagggg ctctgtaccg cctctggttt
1151 tgagagccca ttccccattc tcgggctgcc agagattgcg gtcacagacg
1201 gagcccgact ccgtaaggtt agttgtaata ttagatacct tagccaaacc
1251 cacctaggtc ttgtatataa ggcaccaaat gcctccctgc acaatgcgct
1301 tgtagcagtg gagagaagag tttacacagt aggaaagggg gataaggcaa
1351 tctacccccc ccgcccagag catgacattt tcactgatac aatggattac
1401 tttcagaaat ccattataga agaggtggga tactgtaaga catacccagc
1451 gcaactcctg gctaacagct atagcgcagg aaagcgggcc atgtatcaca
1501 aagctattgc atcattgaga actatccctt accatcagaa ggatgccaat
1551 gtgcaagctt tcctgaagaa ggaaaaacac tggatgacca aggacatcgc
1601 cccccgattg atttgccccc gcagcaagcg gtacaacatc atcctaggaa
1651 ctcgtttgaa attcaacgag aagaagatca tgcacgctat cgatagtgtg
1701 ttcggatccc ccactgtgct ttctggctat gacaacttta aacaaggaag
1751 aatcatagcc aagaagtggc aaaagtttgc atgccccgtc gccatcggcg
1801 tggatgctag ccgctttgac caacacgtgt cagagcaggc gcttaagtgg
1851 gaacacggga tatataatgg ggtctttgga gacagcgaac tggctcttgc
1901 acttgaacat caaatcacca acaacatcaa gatgtttgtt gaagataaaa
1951 tgcttagatt caaggtaaga ggccacagaa tgtccggtga cattaacacc
2001 agcatgggaa ataagctcat aatgtgcggc atgatgcatg cctatttcaa
2051 gaagctgggt gttgaagctg aactttgtaa caacggagac gactgtgtca
2101 tcatcactga tagagccaat gagaagctct ttgatggcat gtacgaccat
2151 ttcctccggt atggcttcaa catggtgacc gaaaaaccag tctacgaact
2201 ggagcaattg gagttttgcc agtcaaaacc ggtctctatt aatggaaagt
2251 atagaatggt cagaaggccc gatagcatag gcaaagatag cacaacacta
2301 ctgagcatgc tcaatcaatc cgacgttaaa agctacatgt cggccgtggc
2351 tcagtgcggc ttggtgctca acgctggggt acccatactt gagagcttct
2401 acaaatgcct atacagaagc tctgggtaca agaaagtgag tgaggaattc
2451 atcaaaaacg tcatttcgta tggaacggat gagagactac aaggtagacg
2501 taccttccaa gacacaccta tcaccaatca tagtaggatg tcctactggg
2551 aatcattcgg agttgaccct aagatacaac aaattgtcga gcggtactac
2601 gacaatctta cggtaagtgc ccaactccag agtgtgaagg tgactactcc
2651 acatctgcaa tcaatactac tttccatacc ggaaaaccac tcacataacg
2701 aatattaatt accagatttt agctgggttt ggaatagggt ttatagcgtc
2751 tataccctgt acattagctc tcacgtattt tatttacaat aaagtttcag
2801 acactactag agaggtagtg aatgaattca gtaggccgta gaaacaaccg
2851 caggaggaat ggcccaagga gagcaaggcg cgttagcgca gttcggagaa
2901 tggttgtggt ccaacccaat cgagccggac caaaacgacg agctcgtcga
2951 cgcacaagag gaggaggggc aaatcttata tctggaccag caggcaggac
3001 tgaggtattc gtattctcag tcaacgacct taaggccaac tcctcaggga
3051 caatcaagtt cggtcccgac ctttcgcaat gcccagcgct ttcaggtgga
3101 atactcaagt cctaccacct ttacaagatc acaaacgtca aggttgagtt
3151 taagtcacac gcgtccgcct ctacagtcgg cgcaatgttt attgaactcg
3201 acacttggtg ctcacaatca accttgggta gctacattaa ctcattcacc
3251 atctcaaaat cagcaaccaa aaccttcacc gcccaacaga ttgacgggaa
3301 ggaattcagg gagagtacgg tgaaccaatt ttacatgcta tacaaggcga
3351 atggtagtac atctgatacc gccgggcaat tcatcattac aatacgcgtt
3401 gccaacatga ctcccaaata ggtagactcc tcaacaccag aaccttcgcc
3451 acaaccccag ccagagccca aacctgatcc gcagccaaca ccagagcctc
3501 gacagaaacg gtttttcgag tacgtaggaa cgccctatgt tgtcatacaa
3551 actagggaga gttcggatag cattgccgtt aaggcgatga atgatcaatc
3601 ttttcagtac atcgaaaatg aaacttcgga gcaaagaacc gtcaaggcat
3651 ggtggaactc caacaacagt gtccaagcgc aagcagcatt tatatttcct
3701 atacccgctg gtgagtacag cgtgaatatc tcttgcgaag gtctacaatc
3751 tgtggaccac attggaggaa acagagacgg atattggata ggcttgatag
3801 cctaccaaag ccaaagtggg gactactggg gcgtaggtaa ctatgtcggc
3851 tgtgatataa caaatcttct aggaacaaac acttggcgtc caggccatga
3901 agatttggaa ttaaacagct gtaaattcac agatggacaa atagttgaaa
3951 gagatgctgt gatatctttc catgtcaaag ctaggggtgc tgatcccaag
4001 ttttacctca tggcacctaa aaccatgaag gctgacaaat acaactatgt
4051 tgtgtcgtat ggagggtaca cagataaaag aatggaattt ggaaccatat
4101 ctgtcactgt ggatgaatct gatgttgagg cagaacgcta tagcaggcac
4151 acgagcacgg tcaggagaac agagaaccga gattacgggt ggatgaatgt
4201 gctcccaccc tacaatcctg accaagtacc agagcaggaa gatgaacaac
4251 cagtggttga taaggaaatg gatgccggat cccctatcga caccgcatcg
4301 ttgacctctg atactgaggc tgagaaagcc tttgacttga aggaagaaga
4351 acttactagg gccattcttg aatacgaggc agccactgta tcaatacctg
4401 atgctgcccc ggatatcttg ccctctaaat ctgagatgag cagcaaacca
4451 atagaccgag atgggaggtc tttaccaaaa tctcagacaa aggaagtcct
4501 tggcacttac caaggccaga acatcacttc tgatgatgtt cctcctgtca
4551 tagctgaaaa attgcgtgaa gtaaacagag caccatctac tctgctttac
4601 gacaggcagc caaaacaacc taaaaatcct cttacccgtt tcgtattatc
4651 taataagact agcacggctt cccctggctc ccagtcttcc actgctggaa
4701 tgacgagaga acaagcatct gaatacacca ggattaggaa gtctttgggc
4751 ctaacagcag caaaacaata caaagcaagc ctcgatgaca catagtgaag
4801 atcaacacca ctcgcaaata cggatcctgg gaaacaggca gaacttcggt
4851 tcgtaagctc gggtaaacta gtcctttacc gccgtatcgt actttgtgtg
4901 gccgatggat gatctacatg tgatagcggt ttgcgtgctg tccacgacag
4951 tgttcgcagg ctttgtgttg acaatagggg ccgcagctag tctctgtggg
5001 tgtgtttatt caacagtcta taacacaaag gtctaatctg tgatacgacc
5051 aaccaaaaat aaacggggaa cctcgggttc agcgagaggg ctaacgaccc
5101 tcagtaattg gctggttctg ggagacatga ataccctcct atagaacgaa
5151 gtggaactcc accactgatc aaatcgggaa acatgcttct gtgttgtaca
5201 ctgccccgga gcccaccggg ttaacaaggc tattccacca gctcgatgaa
5251 atgagagtgg agtgaacggc cgg